Cucsa.174780.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ACCCTCCCCTCCGCCGTTTTTCCTCACACTCACAGATCCCGCTCGGTGACCCTTCGCCCGTCCGCAGCTCTTCTCTTCGTTCACTCTCCCGTCGTTCGCACTTCGGTAAGTTCTTTTCTCTTTTCTTTCCTTTTTTTACTCTCCAATTGTAAGATAATTGTTTTGATGGGTTGTTGCTTAACTGCATCATTCAAATTTGCTTTTGATCTAAATTTCTTTGCCATGGTCGGAAGCTTTGATCGGCTGGAACAGGGTAGTTTTGTTTAGATGAGTATCATCCTTACTGGTTCTTTCAAGCTATGGCCAACCTGGTGACCTTTTTGGTTCTTACTTTTGCATACTAAGCTTTTCTTTTCATCAAATGTTTTTTCTAAACTTTAACTGGCGATGGAAGATTATCAGGACTTTGTTTTTGGTTGGCCATTTGACCATTGGTGTGTGGCAGGCAAGAAAAACTGGTTGGCTGAGCAACAATGCTTACACATATTTTTAGAGCATTTTTTTTACATTTAGTATGCTTATGTACCTATAGTATAGGGATATATATATGAGAATTTGAGCAAAGTTGTTTTAAATAATAAATTTTGAACAATTTTTTTTCTTTAATTTTTCCGAAAGTTCCTCTCTTTGTGCTTAAACCTATTTCACGTTAAACCCCCGCCCTCCCATTACATGCTACTCCCCCCTGCCGCACGAATTTCCTATCCAGATAGTTTCTGAATGTTTGAATTTATAGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTGAGAATTTAATTCCATCTTTACTTCCCCAATTAATTTGTTTTTCTTTATTTCAATTCACTTGATCAAGTTGTGGACTCGATGTATAGTTTCAGTTAAAACATCGTGCAAATTTGTTCGACATCACGGTAGTACTGGATGAAATGGATAGCATATAGCATGTTGTGGTGGTCGTTCTTTATGTTTGAAGAGTTTATTTGTTAAATTACATATGCATTATGTTAATTTATATAATTCTTGTTTCATTTTCATTTCTCTTGAACATGTGCTTGGGGTTTGTTAGTATTTAACGTTTCTTGTTAATTCACTGTTGAAACAAATTGAATTTTATAACCTCAGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA ACCCTCCCCTCCGCCGTTTTTCCTCACACTCACAGATCCCGCTCGGTGACCCTTCGCCCGTCCGCAGCTCTTCTCTTCGTTCACTCTCCCGTCGTTCGCACTTCGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA ACCCTCCCCTCCGCCGTTTTTCCTCACACTCACAGATCCCGCTCGGTGACCCTTCGCCCGTCCGCAGCTCTTCTCTTCGTTCACTCTCCCGTCGTTCGCACTTCGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA PPLRRFSSHSQIPLGDPSPVRSSSLRSLSRRSHFAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT*
BLAST of Cucsa.174780.1 vs. Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21 Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. Swiss-Prot
Match: RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 1.7e-20 Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19 Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. Swiss-Prot
Match: RS17_CALS4 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19 Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. Swiss-Prot
Match: RS17_THEMA (30S ribosomal protein S17 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpsQ PE=3 SV=2) HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19 Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TrEMBL
Match: A0A061E6G1_THECC (Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_009914 PE=3 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.8e-40 Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TrEMBL
Match: A0A067G192_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041511mg PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 7.2e-39 Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TrEMBL
Match: A0A067F623_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034020mg PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 7.2e-39 Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TrEMBL
Match: V4RMK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006280mg PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 7.2e-39 Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TrEMBL
Match: V4UQ21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009986mg PE=3 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38 Identity = 79/96 (82.29%), Postives = 88/96 (91.67%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 151.8 bits (382), Expect = 3.6e-37 Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TAIR10
Match: AT3G18880.1 (AT3G18880.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 146.0 bits (367), Expect = 1.9e-35 Identity = 67/83 (80.72%), Postives = 76/83 (91.57%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17) HSP 1 Score: 67.8 bits (164), Expect = 6.7e-12 Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. NCBI nr
Match: gi|449438753|ref|XP_004137152.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus]) HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. NCBI nr
Match: gi|590693501|ref|XP_007044351.1| (Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao]) HSP 1 Score: 172.6 bits (436), Expect = 5.5e-40 Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. NCBI nr
Match: gi|641854574|gb|KDO73368.1| (hypothetical protein CISIN_1g041511mg, partial [Citrus sinensis]) HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38 Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. NCBI nr
Match: gi|567859160|ref|XP_006422263.1| (hypothetical protein CICLE_v10006280mg [Citrus clementina]) HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38 Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1
BLAST of Cucsa.174780.1 vs. NCBI nr
Match: gi|567922298|ref|XP_006453155.1| (hypothetical protein CICLE_v10009986mg [Citrus clementina]) HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38 Identity = 79/96 (82.29%), Postives = 88/96 (91.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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