Cucsa.174780 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.174780
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	30S ribosomal protein S17
Location	scaffold01221 : 533308 .. 534741 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTCCCCTCCGCCGTTTTTCCTCACACTCACAGATCCCGCTCGGTGACCCTTCGCCCGTCCGCAGCTCTTCTCTTCGTTCACTCTCCCGTCGTTCGCACTTCGGTAAGTTCTTTTCTCTTTTCTTTCCTTTTTTTACTCTCCAATTGTAAGATAATTGTTTTGATGGGTTGTTGCTTAACTGCATCATTCAAATTTGCTTTTGATCTAAATTTCTTTGCCATGGTCGGAAGCTTTGATCGGCTGGAACAGGGTAGTTTTGTTTAGATGAGTATCATCCTTACTGGTTCTTTCAAGCTATGGCCAACCTGGTGACCTTTTTGGTTCTTACTTTTGCATACTAAGCTTTTCTTTTCATCAAATGTTTTTTCTAAACTTTAACTGGCGATGGAAGATTATCAGGACTTTGTTTTTGGTTGGCCATTTGACCATTGGTGTGTGGCAGGCAAGAAAAACTGGTTGGCTGAGCAACAATGCTTACACATATTTTTAGAGCATTTTTTTTACATTTAGTATGCTTATGTACCTATAGTATAGGGATATATATATGAGAATTTGAGCAAAGTTGTTTTAAATAATAAATTTTGAACAATTTTTTTTCTTTAATTTTTCCGAAAGTTCCTCTCTTTGTGCTTAAACCTATTTCACGTTAAACCCCCGCCCTCCCATTACATGCTACTCCCCCCTGCCGCACGAATTTCCTATCCAGATAGTTTCTGAATGTTTGAATTTATAGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTGAGAATTTAATTCCATCTTTACTTCCCCAATTAATTTGTTTTTCTTTATTTCAATTCACTTGATCAAGTTGTGGACTCGATGTATAGTTTCAGTTAAAACATCGTGCAAATTTGTTCGACATCACGGTAGTACTGGATGAAATGGATAGCATATAGCATGTTGTGGTGGTCGTTCTTTATGTTTGAAGAGTTTATTTGTTAAATTACATATGCATTATGTTAATTTATATAATTCTTGTTTCATTTTCATTTCTCTTGAACATGTGCTTGGGGTTTGTTAGTATTTAACGTTTCTTGTTAATTCACTGTTGAAACAAATTGAATTTTATAACCTCAGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA

mRNA sequence

ACCCTCCCCTCCGCCGTTTTTCCTCACACTCACAGATCCCGCTCGGTGACCCTTCGCCCGTCCGCAGCTCTTCTCTTCGTTCACTCTCCCGTCGTTCGCACTTCGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA

Coding sequence (CDS)

ACCCTCCCCTCCGCCGTTTTTCCTCACACTCACAGATCCCGCTCGGTGACCCTTCGCCCGTCCGCAGCTCTTCTCTTCGTTCACTCTCCCGTCGTTCGCACTTCGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA

Protein sequence

PPLRRFSSHSQIPLGDPSPVRSSSLRSLSRRSHFAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT*

Homology

[Close]

BLAST of Cucsa.174780 vs. Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 56  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 115
           G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11  GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 116 HKHWVVAEILRKARI 131
           HK W VAE+L +++I
Sbjct: 71  HKRWRVAEVLERSQI 85

[Close]

BLAST of Cucsa.174780 vs. Swiss-Prot
Match: RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-20
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 52  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 111
           K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4   KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 112 PLSKHKHWVVAEILRKARIYEPP 135
           PLSK K WVV  IL ++++ E P
Sbjct: 64  PLSKLKRWVVVNILERSKLSETP 86

[Close]

BLAST of Cucsa.174780 vs. Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 55  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 114
           +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLS
Sbjct: 9   LGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLS 68

Query: 115 KHKHWVVAEILRKARI 131
           K K W +  I+ KAR+
Sbjct: 69  KTKSWTLVRIVEKARV 84

[Close]

BLAST of Cucsa.174780 vs. Swiss-Prot
Match: RS17_CALS4 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 55  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 114
           +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10  IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 115 KHKHWVVAEILRKA 129
           K K W + E+++KA
Sbjct: 70  KEKRWRLVEVIKKA 83

[Close]

BLAST of Cucsa.174780 vs. Swiss-Prot
Match: RS17_THEMA (30S ribosomal protein S17 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpsQ PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 52  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 111
           K++ G+VVS+KM K+VVVAV++L  H LY +YVKRT K+ AHDE N+C IGD V+++ +R
Sbjct: 4   KRLTGIVVSDKMDKTVVVAVEKLVQHPLYKKYVKRTKKYHAHDERNECKIGDVVEIEETR 63

Query: 112 PLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSA 150
           PLSK K W V  I+++   +EP    K+    +  + A
Sbjct: 64  PLSKTKRWRVVRIIQR---FEPERVVKEKEDIQEEIEA 98

[Close]

BLAST of Cucsa.174780 vs. TrEMBL
Match: A0A061E6G1_THECC (Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_009914 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-40
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDEN+QCNIGDRVKLDPS
Sbjct: 1   MKSVVGVVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENDQCNIGDRVKLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 154
           RPLSK KHWVVAE+L+KARIY PPS DK + ++  N + PS+T
Sbjct: 61  RPLSKRKHWVVAEVLKKARIYVPPSMDKAANANFKNEAPPSST 103

[Close]

BLAST of Cucsa.174780 vs. TrEMBL
Match: A0A067G192_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041511mg PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.2e-39
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 49  TKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLD 108
           ++MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LD
Sbjct: 40  SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLD 99

Query: 109 PSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           PSRPLSKHKHW+VAEIL+KARIY PPS D  + +  SN
Sbjct: 100 PSRPLSKHKHWLVAEILKKARIYVPPSADNAAAAAVSN 137

[Close]

BLAST of Cucsa.174780 vs. TrEMBL
Match: A0A067F623_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034020mg PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.2e-39
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           RPLSKHKHW VAEIL+KARIY PPS D  + +  SN
Sbjct: 61  RPLSKHKHWAVAEILKKARIYVPPSADNAAAAAVSN 96

[Close]

BLAST of Cucsa.174780 vs. TrEMBL
Match: V4RMK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006280mg PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.2e-39
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           RPLSKHKHW VAEIL+KARIY PPS D  + +  SN
Sbjct: 61  RPLSKHKHWAVAEILKKARIYVPPSADNAAAAAVSN 96

[Close]

BLAST of Cucsa.174780 vs. TrEMBL
Match: V4UQ21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009986mg PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 79/96 (82.29%), Postives = 88/96 (91.67%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           RPLSKHKHW+VAEIL+KARIY PPS D  + +  SN
Sbjct: 61  RPLSKHKHWLVAEILKKARIYVPPSADNAAAAAVSN 96

[Close]

BLAST of Cucsa.174780 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 154
           RPLSK+KHW+VAEI++KARIY P +    +VS  ++ S+ STT
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAA-AAAVSASASASSASTT 102

[Close]

BLAST of Cucsa.174780 vs. TAIR10
Match: AT3G18880.1 (AT3G18880.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-35
Identity = 67/83 (80.72%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1   MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEP 134
           RPLSKHKHW+V+EI++KARIY P
Sbjct: 61  RPLSKHKHWIVSEIIKKARIYSP 83

[Close]

BLAST of Cucsa.174780 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 1


Query: 7   SSHSQIPLGDPSPVRSSSLRSLSRRSHFAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKS 66
           SS   + L  P    S+ L SLS+ + F    +       R   MK + G VV     K+
Sbjct: 8   SSLQALKLSSPFAHGSTPLSSLSKPNSFPNHRMPALVPVIR--AMKTMQGRVVCATSDKT 67

Query: 67  VVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILR 126
           V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ 
Sbjct: 68  VAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIA 127

Query: 127 KA 129
           +A
Sbjct: 128 RA 127

[Close]

BLAST of Cucsa.174780 vs. NCBI nr
Match: gi|449438753|ref|XP_004137152.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 154
           RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]

BLAST of Cucsa.174780 vs. NCBI nr
Match: gi|590693501|ref|XP_007044351.1| (Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao])

HSP 1 Score: 172.6 bits (436), Expect = 5.5e-40
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDEN+QCNIGDRVKLDPS
Sbjct: 1   MKSVVGVVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENDQCNIGDRVKLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 154
           RPLSK KHWVVAE+L+KARIY PPS DK + ++  N + PS+T
Sbjct: 61  RPLSKRKHWVVAEVLKKARIYVPPSMDKAANANFKNEAPPSST 103

[Close]

BLAST of Cucsa.174780 vs. NCBI nr
Match: gi|641854574|gb|KDO73368.1| (hypothetical protein CISIN_1g041511mg, partial [Citrus sinensis])

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 49  TKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLD 108
           ++MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LD
Sbjct: 40  SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLD 99

Query: 109 PSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           PSRPLSKHKHW+VAEIL+KARIY PPS D  + +  SN
Sbjct: 100 PSRPLSKHKHWLVAEILKKARIYVPPSADNAAAAAVSN 137

[Close]

BLAST of Cucsa.174780 vs. NCBI nr
Match: gi|567859160|ref|XP_006422263.1| (hypothetical protein CICLE_v10006280mg [Citrus clementina])

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           RPLSKHKHW VAEIL+KARIY PPS D  + +  SN
Sbjct: 61  RPLSKHKHWAVAEILKKARIYVPPSADNAAAAAVSN 96

[Close]

BLAST of Cucsa.174780 vs. NCBI nr
Match: gi|567922298|ref|XP_006453155.1| (hypothetical protein CICLE_v10009986mg [Citrus clementina])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 79/96 (82.29%), Postives = 88/96 (91.67%), Query Frame = 1


Query: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 60

Query: 111 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSN 147
           RPLSKHKHW+VAEIL+KARIY PPS D  + +  SN
Sbjct: 61  RPLSKHKHWLVAEILKKARIYVPPSADNAAAAAVSN 96

The following BLAST results are available for this feature:

BLAST of Cucsa.174780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS17_DESAP	4.4e-21	64.00	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE...	[more]
RS17_FERNB	1.7e-20	55.42	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
RS17_PHOPR	5.4e-19	52.63	30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) GN=rpsQ PE=3 ...	[more]
RS17_CALS4	5.4e-19	58.11	30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
RS17_THEMA	5.4e-19	46.94	30S ribosomal protein S17 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM...	[more]

BLAST of Cucsa.174780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E6G1_THECC	3.8e-40	80.58	Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]
A0A067G192_CITSI	7.2e-39	80.61	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041511mg PE=3 S...	[more]
A0A067F623_CITSI	7.2e-39	83.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034020mg PE=3 SV=1	[more]
V4RMK3_9ROSI	7.2e-39	83.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006280mg PE=3 SV=1	[more]
V4UQ21_9ROSI	1.2e-38	82.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009986mg PE=3 SV=1	[more]

BLAST of Cucsa.174780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49400.1	3.6e-37	71.84	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	1.9e-35	80.72	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	6.7e-12	36.07	ribosomal protein S17	[more]

BLAST of Cucsa.174780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438753\|ref\|XP_004137152.1\|	3.1e-51	100.00	PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus]	[more]
gi\|590693501\|ref\|XP_007044351.1\|	5.5e-40	80.58	Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao]	[more]
gi\|641854574\|gb\|KDO73368.1\|	1.0e-38	80.61	hypothetical protein CISIN_1g041511mg, partial [Citrus sinensis]	[more]
gi\|567859160\|ref\|XP_006422263.1\|	1.0e-38	83.33	hypothetical protein CICLE_v10006280mg [Citrus clementina]	[more]
gi\|567922298\|ref\|XP_006453155.1\|	1.8e-38	82.29	hypothetical protein CICLE_v10009986mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000266	Ribosomal_S17/S11
IPR012340	NA-bd_OB-fold
IPR019984	Ribosomal_S17

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.174780.1	Cucsa.174780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRODOM	PD001295		coord: 54..121 score: 3.0
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 112..119 score: 1.4E-10coord: 70..93 score: 1.4E-10coord: 102..112 score: 1.4
IPR000266	Ribosomal protein S17/S11	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 49..127 score: 2
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 51..144 score: 1.9
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 56..123 score: 8.1
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 51..142 score: 1.3
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 51..139 score: 4.2
IPR019984	Ribosomal protein S17, bacterial-type	TIGRFAMs	TIGR03635	TIGR03635	coord: 52..121 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.174780	CSPI04G09590	Wild cucumber (PI 183967)	cgycpiB276
Cucsa.174780	CsaV3_4G009740	Cucumber (Chinese Long) v3	cgycucB279

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.174780	Cucumber (Chinese Long) v2	cgycuB266
Cucsa.174780	Melon (DHL92) v3.5.1	cgymeB309
Cucsa.174780	Melon (DHL92) v3.6.1	cgymedB303