Cucsa.164900.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.164900.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Thioredoxin H-type
Location	scaffold01153 : 244206 .. 245496 (-)
Sequence length	1181

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCTTCTCATTTCTCCTTAATTCAAATCCCTTTTCTCTAACCCTTATTATTCTTCCCTTTGCTTTTCTTCTATATCTGAAAATAGTTATCAAAATGGCAGAAATGGGAAAAGTTATAAAATGCCACACTCTTGCCTCATGGAACCAACAACTCCTCAAAGCCCAACAATACAACAAGCTGGTATAGTTTATTACTATTGTCATATATATATTATTACTTGTTTCTCTTTTTTGGACAGCTTAATTTTTGTTAAGTTGTTTATCTAAGCAATACCTATATTCTATGGACAGCTTGTCGTGAACTTTACTGCAAAATGGTGTGGTCCATGTCATGCCATGGCTCATGTTCTTGAAGAATTAGCAAAGAAGATGAACAATGTTATTTTTTTGAAAGTAGACATTGATGAACTGAATGTGAGTTTTATTCCATCAAGGCATGTTTGGAATTACTTTCAAACTACTTAAATATATATATATATACATACATATATATTCATTTAAAAGCTTGACAAGTCATTCTAAATAACATATATTCTGTAGGTATTTTTGTTTATGTTTATAATGATCATTAAAATTGAAGGGGGTTTTTGTCACTCAAACTAAAGTATTTTTTTTTTTTCCTCCTTTTTTGGAGACTGTGGCGAATGAGTTTGAAGTGACTGCCCTTCCTTCATATCATTTCTTGAAGAATGGGAGATTGGTTGAAAAATTCGAAGGTGCAAAGAAGGATGTACTGAAAAGCACTGTATCCAAACATGCCACATGAAGTAGCACTCTACCAAATGGTTTACTTTTCTTTAATCGTTTTTGTTTTTTGTTTTGGGACACCTACAAAGGATTGATTTGATCAACCATCAATAACAATGCTACAAATTCAGACATCCATAAATGATAATAAGAATTCAGCCCGATTATGTATTGTTAGTTGATTTGGAATTGGATCTATAGTTTAGGTTTTATTCTTTTTTCCTTTTCTTTAAAAAGATATTTTGTTAAGAAACAAAAAAAAAACAAAACTTACAAGTGAAGTGTTAGAGAAAAGCTATCCAATTCATTTGCAAAAGTACCAAGTGGGCGGCATCAATAAAGGTGGCATCTTCCAAAAGAGAAAAAGGGGAACTTTAGAATGGCCTTTGAAAATTATGTCCAAGAGAAAGGATATTGATCTACTTATCAAAATAGTTTGTAAGAAAAATGTTACAAAAATTGAAAAATATATAATACAAAAACGTATAATACTAGATGATCGATACACAAATTTATTTGTACTACTAACAATGTATTGGCTAC

mRNA sequence

GTTGCTTCTCATTTCTCCTTAATTCAAATCCCTTTTCTCTAACCCTTATTATTCTTCCCTTTGCTTTTCTTCTATATCTGAAAATAGTTATCAAAATGGCAGAAATGGGAAAAGTTATAAAATGCCACACTCTTGCCTCATGGAACCAACAACTCCTCAAAGCCCAACAATACAACAAGCTGCTTGTCGTGAACTTTACTGCAAAATGGTGTGGTCCATGTCATGCCATGGCTCATGTTCTTGAAGAATTAGCAAAGAAGATGAACAATGTTATTTTTTTGAAAGTAGACATTGATGAACTGAATGTGAGTTTTATTCCATCAAGGCATGTTTGGAATTACTTTCAAACTACTTAAatatatatatatatacatacatatatatTCATTTAAAAGCTTGACAAGTCATTCTAAATAACATATATTCTGTAGGTATTTTTGTTTATGTTTATAATGATCATTAAAATTGAAGGGGGTTTTTGTCACTCAAACTAAAGTATTTTTTTTTTTTCCTCCTTTTTTGGAGACTGTGGCGAATGAGTTTGAAGTGACTGCCCTTCCTTCATATCATTTCTTGAAGAATGGGAGATTGGTTGAAAAATTCGAAGGTGCAAAGAAGGATGTACTGAAAAGCACTGTATCCAAACATGCCACATGAAGTAGCACTCTACCAAATGGTTTACTTTTCTTTAATCGTTTTTGTTTTTTGTTTTGGGACACCTACAAAGGATTGATTTGATCAACCATCAATAACAATGCTACAAATTCAGACATCCATAAATGATAATAAGAATTCAGCCCGATTATGTATTGTTAGTTGATTTGGAATTGGATCTATAGTTTAGGTTTTATTCTTTTTTCCTTTTCTTTAAAAAGATATTTTGTTAAGAAACAAAAAAAAAACAAAACTTACAAGTGAAGTGTTAGAGAAAAGCTATCCAATTCATTTGCAAAAGTACCAAGTGGGCGGCATCAATAAAGGTGGCATCTTCCAAAAGAGAAAAAGGGGAACTTTAGAATGGCCTTTGAAAATTATGTCCAAGAGAAAGGATATTGATCTACTTATCAAAATAGTTTGTAAGAAAAATgttacaaaaattgaaaaatatataatacaaaaacgtataatactagatgatcgatacacaaatttatttgtactactaacaatgtattggctac

Coding sequence (CDS)

ATGGCAGAAATGGGAAAAGTTATAAAATGCCACACTCTTGCCTCATGGAACCAACAACTCCTCAAAGCCCAACAATACAACAAGCTGCTTGTCGTGAACTTTACTGCAAAATGGTGTGGTCCATGTCATGCCATGGCTCATGTTCTTGAAGAATTAGCAAAGAAGATGAACAATGTTATTTTTTTGAAAGTAGACATTGATGAACTGAATGTGAGTTTTATTCCATCAAGGCATGTTTGGAATTACTTTCAAACTACTTAA

Protein sequence

MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVIFLKVDIDELNVSFIPSRHVWNYFQTT*

Homology

[Close]

BLAST of Cucsa.164900.2 vs. Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2  AEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVIF 61
          AE G+VI CHT+ +WN+QL K      L+VV+FTA WCGPC  +A  L ELAKK+ NV F
Sbjct: 3  AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTF 62

Query: 62 LKVDIDEL 70
          LKVD+DEL
Sbjct: 63 LKVDVDEL 70

[Close]

BLAST of Cucsa.164900.2 vs. Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-17
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 2  AEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVIF 61
          +E G+VI CHT+ +WN+QL KA +   L+VV+FTA WCGPC  +A    +LAKK+ NV+F
Sbjct: 3  SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 62 LKVDIDEL 70
          LKVD DEL
Sbjct: 63 LKVDTDEL 70

[Close]

BLAST of Cucsa.164900.2 vs. Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H5 OS=Arabidopsis thaliana GN=TRX5 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.3e-16
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MA  G+VI CHTL  WN+++  A +  KL+V++FTA WC PC  +A V  E+AKK  NV+
Sbjct: 1  MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60

Query: 61 FLKVDIDEL 70
          F K+D+DEL
Sbjct: 61 FFKIDVDEL 69

[Close]

BLAST of Cucsa.164900.2 vs. Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-15
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 2  AEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVIF 61
          +E G+V  CH +  WN+   K  +  KL+VV+FTA WCGPC  +A +L ++AKKM +VIF
Sbjct: 9  SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIF 68

Query: 62 LKVDIDEL 70
          LKVD+DEL
Sbjct: 69 LKVDVDEL 76

[Close]

BLAST of Cucsa.164900.2 vs. Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-15
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MAE G+VI  HT+ +WN+ L K     KL+VV+FTA WCGPC  +A    ELAKKM  V 
Sbjct: 1  MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVT 60

Query: 61 FLKVDIDEL 70
          FLKVD+DEL
Sbjct: 61 FLKVDVDEL 69

[Close]

BLAST of Cucsa.164900.2 vs. TrEMBL
Match: A0A0A0KLR8_CUCSA (Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-33
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI
Sbjct: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60

Query: 61 FLKVDIDELN-------VSFIPSRH 79
          FLKVDIDELN       V+ +PS H
Sbjct: 61 FLKVDIDELNTVANEFEVTALPSYH 85

[Close]

BLAST of Cucsa.164900.2 vs. TrEMBL
Match: A0A0A0KLS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60
          MAEMGKVI CHT++SW Q LLKA+Q NKL+VVNFTA WCGPC  MA +LEELAKKM NNV
Sbjct: 1  MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61 IFLKVDIDEL-------NVSFIPS 77
          IFLKVDIDEL        VS +PS
Sbjct: 61 IFLKVDIDELMSIAKEFGVSSVPS 84

[Close]

BLAST of Cucsa.164900.2 vs. TrEMBL
Match: A0A0A0KSB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-20
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60
          M +MGKV+ CHT+ SW QQLLKA+Q NKL+VVNFTA WC PC  MA VLE+LA KM NNV
Sbjct: 1  MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61 IFLKVDIDEL 70
           FLKVD+DEL
Sbjct: 61 TFLKVDVDEL 70

[Close]

BLAST of Cucsa.164900.2 vs. TrEMBL
Match: A0A0A0LGF7_CUCSA (Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MAE  +VI CHT+ SW QQLLK +Q++KL+VV+FTA WCGPC A+A V  ELA+KM+NVI
Sbjct: 1  MAEKSQVIACHTVESWKQQLLKGKQFDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVI 60

Query: 61 FLKVDIDEL 70
          FLKVD+D+L
Sbjct: 61 FLKVDVDKL 69

[Close]

BLAST of Cucsa.164900.2 vs. TrEMBL
Match: A0A0D2MA57_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G126200 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MAE G+VI CHT+ SWNQQL    Q  KL+VV+FTA WCGPC  ++ +L +LAKK+ NVI
Sbjct: 1  MAEEGQVIACHTVDSWNQQLEMGNQSKKLVVVDFTASWCGPCRFISPILVDLAKKLPNVI 60

Query: 61 FLKVDIDELNV 72
          FLKVD+DELNV
Sbjct: 61 FLKVDVDELNV 71

[Close]

BLAST of Cucsa.164900.2 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-18
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 2  AEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVIF 61
          +E G+VI CHT+ +WN+QL KA +   L+VV+FTA WCGPC  +A    +LAKK+ NV+F
Sbjct: 3  SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 62 LKVDIDEL 70
          LKVD DEL
Sbjct: 63 LKVDTDEL 70

[Close]

BLAST of Cucsa.164900.2 vs. TAIR10
Match: AT1G45145.1 (AT1G45145.1 thioredoxin H-type 5)

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-17
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MA  G+VI CHTL  WN+++  A +  KL+V++FTA WC PC  +A V  E+AKK  NV+
Sbjct: 1  MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60

Query: 61 FLKVDIDEL 70
          F K+D+DEL
Sbjct: 61 FFKIDVDEL 69

[Close]

BLAST of Cucsa.164900.2 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MA  G+VI CHT+  W ++L  A +  KL+V++FTA WC PC  +A V  +LAKK  +V+
Sbjct: 1  MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVV 60

Query: 61 FLKVDIDELN 71
          F KVD+DELN
Sbjct: 61 FFKVDVDELN 70

[Close]

BLAST of Cucsa.164900.2 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.4e-16
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 2  AEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKK-MNNVI 61
          AE G+VI CHT   W  QL KA++ NKL+V++FTA WC PC  +A +  +LAKK M++ I
Sbjct: 3  AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62 FLKVDIDEL 70
          F KVD+DEL
Sbjct: 63 FFKVDVDEL 71

[Close]

BLAST of Cucsa.164900.2 vs. TAIR10
Match: AT1G69880.1 (AT1G69880.1 thioredoxin H-type 8)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-12
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 7   VIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVIFLKVDI 66
           +++   +  W  +L   +  NKLLV+ FTAKWCGPC  +   LEELA K  +V F+K+D+
Sbjct: 39  IVEIKNMNQWKSRLNALKDTNKLLVIEFTAKWCGPCKTLEPKLEELAAKYTDVEFVKIDV 98

Query: 67  D-------ELNVSFIPS 77
           D       E N+S +P+
Sbjct: 99  DVLMSVWMEFNLSTLPA 115

[Close]

BLAST of Cucsa.164900.2 vs. NCBI nr
Match: gi|449464458|ref|XP_004149946.1| (PREDICTED: thioredoxin H-type [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI
Sbjct: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60

Query: 61 FLKVDIDELN-------VSFIPSRH 79
          FLKVDIDELN       V+ +PS H
Sbjct: 61 FLKVDIDELNTVANEFEVTALPSYH 85

[Close]

BLAST of Cucsa.164900.2 vs. NCBI nr
Match: gi|659129892|ref|XP_008464898.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 69/85 (81.18%), Postives = 74/85 (87.06%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKMNNVI 60
          MA++GKVI CHTLASWNQQLLKAQQYNKLLVVNFTA+WCGPCHAMA VLEELAKKMNNVI
Sbjct: 1  MADVGKVITCHTLASWNQQLLKAQQYNKLLVVNFTARWCGPCHAMASVLEELAKKMNNVI 60

Query: 61 FLKVDIDELN-------VSFIPSRH 79
          FLKVDIDELN       V+ +PS H
Sbjct: 61 FLKVDIDELNSVAKEFEVAALPSYH 85

[Close]

BLAST of Cucsa.164900.2 vs. NCBI nr
Match: gi|659129894|ref|XP_008464899.1| (PREDICTED: thioredoxin H-type-like [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60
          MAEMGKVI CHT++SW Q LLKA+QYNKL+VVNFTA WCGPC  MA +LEELAKKM NNV
Sbjct: 1  MAEMGKVISCHTVSSWKQHLLKAEQYNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61 IFLKVDIDEL-------NVSFIPS 77
          IFLKVDIDEL        VS +PS
Sbjct: 61 IFLKVDIDELMSIAKEFGVSSVPS 84

[Close]

BLAST of Cucsa.164900.2 vs. NCBI nr
Match: gi|449464454|ref|XP_004149944.1| (PREDICTED: thioredoxin H-type-like [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60
          MAEMGKVI CHT++SW Q LLKA+Q NKL+VVNFTA WCGPC  MA +LEELAKKM NNV
Sbjct: 1  MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61 IFLKVDIDEL-------NVSFIPS 77
          IFLKVDIDEL        VS +PS
Sbjct: 61 IFLKVDIDELMSIAKEFGVSSVPS 84

[Close]

BLAST of Cucsa.164900.2 vs. NCBI nr
Match: gi|659129896|ref|XP_008464900.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 1  MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60
          M +MGKV+ CHT+ SW QQLLKA+QYNKL+VVNFTA WC PC  MA VL++LA KM NNV
Sbjct: 1  MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61 IFLKVDIDEL 70
          I LKVD+DEL
Sbjct: 61 IVLKVDVDEL 70

The following BLAST results are available for this feature:

BLAST of Cucsa.164900.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXH_RICCO	2.2e-17	60.29	Thioredoxin H-type OS=Ricinus communis PE=3 SV=1	[more]
TRXH1_ARATH	6.3e-17	57.35	Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1	[more]
TRXH5_ARATH	5.3e-16	52.17	Thioredoxin H5 OS=Arabidopsis thaliana GN=TRX5 PE=1 SV=1	[more]
TRXH1_TOBAC	1.6e-15	52.94	Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1	[more]
TRXH2_TOBAC	1.6e-15	57.97	Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1	[more]

BLAST of Cucsa.164900.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLR8_CUCSA	1.5e-33	87.06	Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1	[more]
A0A0A0KLS7_CUCSA	1.8e-23	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1	[more]
A0A0A0KSB1_CUCSA	3.3e-20	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1	[more]
A0A0A0LGF7_CUCSA	2.8e-19	66.67	Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1	[more]
A0A0D2MA57_GOSRA	1.8e-18	64.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G126200 PE=4 SV=1	[more]

BLAST of Cucsa.164900.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51030.1	3.6e-18	57.35	thioredoxin H-type 1	[more]
AT1G45145.1	3.0e-17	52.17	thioredoxin H-type 5	[more]
AT5G42980.1	2.6e-16	51.43	thioredoxin 3	[more]
AT1G19730.1	7.4e-16	55.07	Thioredoxin superfamily protein	[more]
AT1G69880.1	6.5e-12	40.26	thioredoxin H-type 8	[more]

BLAST of Cucsa.164900.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464458\|ref\|XP_004149946.1\|	2.2e-33	87.06	PREDICTED: thioredoxin H-type [Cucumis sativus]	[more]
gi\|659129892\|ref\|XP_008464898.1\|	1.7e-30	81.18	PREDICTED: thioredoxin H1-like [Cucumis melo]	[more]
gi\|659129894\|ref\|XP_008464899.1\|	2.4e-24	72.62	PREDICTED: thioredoxin H-type-like [Cucumis melo]	[more]
gi\|449464454\|ref\|XP_004149944.1\|	2.6e-23	71.43	PREDICTED: thioredoxin H-type-like [Cucumis sativus]	[more]
gi\|659129896\|ref\|XP_008464900.1\|	1.6e-20	71.43	PREDICTED: thioredoxin H1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain
IPR017937	Thioredoxin_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.164900	Cucsa.164900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.164900.2	Cucsa.164900.2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.164900.2.CDS.2	Cucsa.164900.2.CDS.2	CDS
Cucsa.164900.2.CDS.1	Cucsa.164900.2.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.164900.2.three_prime_UTR.1	Cucsa.164900.2.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.164900.2.five_prime_UTR.1	Cucsa.164900.2.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..69 score: 7.5
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 7..70 score: 4.5
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 3..71 score: 5.0
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 8..70 score: 1.7
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 1..86 score:
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 31..49 scor
None	No IPR available	PANTHER	PTHR10438:SF274	THIOREDOXIN H1	coord: 1..69 score: 7.5