Cucsa.164320.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTAAGAAATCTCTTTTCTTTTTCCATATTTGTAAAATCTATAAACCCTGACTGGTCTTCAAACTACATTATGTTACCAGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTACATCCATTCTCTTCTAATTATTCATTTTCCAGACTTTTGATTATTATAAGTTTTTATTATTCCAGTAAGTTTGTTACATGATTTTGCATCTCTTTCTCACGCTTGCTTTTTCTTCAAAATTGATGTCAGTTACTTCAATTAACTTTTGTGGAGGGCTTTGGGATCTTATATTTATTCTTCTCACATTTTCTTATTTGAAAAAATGTGTTCAGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGGTAGAAGAAAAATCACCTTCTCAACCGTGTATAAAAACAAATTGTATCAACCATCATTATATATCAAAATATTGTCTCATTTTCTGTGCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGGTTGGTTCTCTTGACGTATTTGTTTATATTGAGTATTCTCCTAAATGGTTTGTTTTTTAGATCTTCTATATTGTATTTTGGTTGTCAATACGTATACAGAAATCATGTGGGTGAAAGTAGGTTATTAGTTGTTAAAAAAATTAATGTTTGAATTTTCATATTTATTTCAATGTTTTCTTTTCCTTAAAAAAAATTAAATAAAAGGAACCGAGCCATTCATTGATGTAAATCCTAGAGATCAAACCTAGAGATCAGTACAATGGTAAGAAACAGCAAATAAATCCTAGAGATCAATAAGTGCAGCCAGACTAGACATATCAATTAAGTTCACACCTCTTTTGCACTCTCATCGTATCCAAAGCAAACTAAGGCAATACACGGCCTACAATGTTTCACCACCACAAAATACAACCACGCTCAGATACACAGCAAAAACAGTTTGACACCAAAAAGGAACAAACTAAACATATAAGTCGCACCATCAGAATATACAAAGTAGATAAGGGAAAGCTTAAGTTGGAAAAATAAAAGCCCGCTAATTTAAACATAAATCTTGGGTGGAGAAGTCTTCAAATGGCTTGGATAAAGTGCACCAAGAGGAGACATTCATCCTTGCCGCTTCAAATCATTCCATCTATCCAAGTTCCTTACCATGAAACTGTTGGAGAAGTTGAGAGTCCCACATTGGAAAAACCAAGATGACTCATACTCTATATAAGATAGATGGACCACTCCTCTCATTCTCAATTGGTTTTGTTCTCAATTGGTTTTGAGATAGAACCCCATACTATCAAATTTAACCGAAACAACCTTTGTTTGTGTTCAAACCAAATTTCAGCAAGTAAAGCCTTCACCGCATTTGACCAATTCAACAAACTGA ACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGaaccccatactatcaaatttaaCCgaaacaacctttgtttgtgttcaaaccaaatttcagcaagtaaagccttcaccgcatttgaccaattcaacaaactga ACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGAACCCCATACTATCAAATTTAACCGAAACAACCTTTGTTTGTGTTCAAACCAAATTTCAGCAAGTAAAGCCTTCACCGCATTTGACCAATTCAACAAACTGA LVVILIYHMIKISKLMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKNPILSNLTETTFVCVQTKFQQVKPSPHLTNSTN*
BLAST of Cucsa.164320.1 vs. Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2) HSP 1 Score: 194.5 bits (493), Expect = 9.6e-49 Identity = 90/128 (70.31%), Postives = 110/128 (85.94%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3) HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15 Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15 Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4) HSP 1 Score: 84.0 bits (206), Expect = 1.8e-15 Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. Swiss-Prot
Match: ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2) HSP 1 Score: 82.8 bits (203), Expect = 4.1e-15 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. TrEMBL
Match: A0A0A0KZR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63 Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. TrEMBL
Match: F6HKV8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08730 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49 Identity = 97/128 (75.78%), Postives = 111/128 (86.72%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. TrEMBL
Match: A0A0K9R6R0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107110 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 3.9e-49 Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. TrEMBL
Match: A0A0D2PXZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G146400 PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 5.1e-49 Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. TrEMBL
Match: A0A061EWL2_THECC (ABC transporter family, cholesterol/phospholipid flippase isoform 1 OS=Theobroma cacao GN=TCM_024563 PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 5.1e-49 Identity = 96/128 (75.00%), Postives = 113/128 (88.28%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. TAIR10
Match: AT2G41700.1 (AT2G41700.1 ATP-binding cassette A1) HSP 1 Score: 194.5 bits (493), Expect = 5.4e-50 Identity = 90/128 (70.31%), Postives = 110/128 (85.94%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. NCBI nr
Match: gi|778692291|ref|XP_011653436.1| (PREDICTED: ABC transporter A family member 1 isoform X5 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. NCBI nr
Match: gi|778692282|ref|XP_011653435.1| (PREDICTED: ABC transporter A family member 1 isoform X4 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. NCBI nr
Match: gi|778692278|ref|XP_011653434.1| (PREDICTED: ABC transporter A family member 1 isoform X3 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. NCBI nr
Match: gi|778692276|ref|XP_011653433.1| (PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1
BLAST of Cucsa.164320.1 vs. NCBI nr
Match: gi|778692274|ref|XP_011653432.1| (PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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