Cucsa.164320 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.164320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP-binding cassette transporter
Location	scaffold01148 : 169711 .. 171399 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTAAGAAATCTCTTTTCTTTTTCCATATTTGTAAAATCTATAAACCCTGACTGGTCTTCAAACTACATTATGTTACCAGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTACATCCATTCTCTTCTAATTATTCATTTTCCAGACTTTTGATTATTATAAGTTTTTATTATTCCAGTAAGTTTGTTACATGATTTTGCATCTCTTTCTCACGCTTGCTTTTTCTTCAAAATTGATGTCAGTTACTTCAATTAACTTTTGTGGAGGGCTTTGGGATCTTATATTTATTCTTCTCACATTTTCTTATTTGAAAAAATGTGTTCAGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGGTAGAAGAAAAATCACCTTCTCAACCGTGTATAAAAACAAATTGTATCAACCATCATTATATATCAAAATATTGTCTCATTTTCTGTGCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGGTTGGTTCTCTTGACGTATTTGTTTATATTGAGTATTCTCCTAAATGGTTTGTTTTTTAGATCTTCTATATTGTATTTTGGTTGTCAATACGTATACAGAAATCATGTGGGTGAAAGTAGGTTATTAGTTGTTAAAAAAATTAATGTTTGAATTTTCATATTTATTTCAATGTTTTCTTTTCCTTAAAAAAAATTAAATAAAAGGAACCGAGCCATTCATTGATGTAAATCCTAGAGATCAAACCTAGAGATCAGTACAATGGTAAGAAACAGCAAATAAATCCTAGAGATCAATAAGTGCAGCCAGACTAGACATATCAATTAAGTTCACACCTCTTTTGCACTCTCATCGTATCCAAAGCAAACTAAGGCAATACACGGCCTACAATGTTTCACCACCACAAAATACAACCACGCTCAGATACACAGCAAAAACAGTTTGACACCAAAAAGGAACAAACTAAACATATAAGTCGCACCATCAGAATATACAAAGTAGATAAGGGAAAGCTTAAGTTGGAAAAATAAAAGCCCGCTAATTTAAACATAAATCTTGGGTGGAGAAGTCTTCAAATGGCTTGGATAAAGTGCACCAAGAGGAGACATTCATCCTTGCCGCTTCAAATCATTCCATCTATCCAAGTTCCTTACCATGAAACTGTTGGAGAAGTTGAGAGTCCCACATTGGAAAAACCAAGATGACTCATACTCTATATAAGATAGATGGACCACTCCTCTCATTCTCAATTGGTTTTGTTCTCAATTGGTTTTGAGATAGAACCCCATACTATCAAATTTAACCGAAACAACCTTTGTTTGTGTTCAAACCAAATTTCAGCAAGTAAAGCCTTCACCGCATTTGACCAATTCAACAAACTGA

mRNA sequence

ACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGaaccccatactatcaaatttaaCCgaaacaacctttgtttgtgttcaaaccaaatttcagcaagtaaagccttcaccgcatttgaccaattcaacaaactga

Coding sequence (CDS)

ACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGAACCCCATACTATCAAATTTAACCGAAACAACCTTTGTTTGTGTTCAAACCAAATTTCAGCAAGTAAAGCCTTCACCGCATTTGACCAATTCAACAAACTGA

Protein sequence

LVVILIYHMIKISKLMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKNPILSNLTETTFVCVQTKFQQVKPSPHLTNSTN*

Homology

[Close]

BLAST of Cucsa.164320 vs. Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 9.6e-49
Identity = 90/128 (70.31%), Postives = 110/128 (85.94%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            +++ERE KAKHQQ+ISGVS+LSYW+STY+WD ISFL P+  A +LFY FG++QFIG GRF
Sbjct: 1197 IVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRF 1256

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            L T ++ LEYGLAIASSTYCLTFFF +H++AQNV+L VHFF+GLILMVISF+MGLI   A
Sbjct: 1257 LPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATA 1316

Query: 135  KTNSFLKN 143
              NS+LKN
Sbjct: 1317 SANSYLKN 1324

[Close]

BLAST of Cucsa.164320 vs. Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1


Query: 2    VVILIYHMIKISK--------LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPT 61
            VVI I+ ++ +S         L+ E+ TKAKH Q +SG + + YW++ Y+WD +++LVP 
Sbjct: 1792 VVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPA 1851

Query: 62   CLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVH 121
                ++ ++F +  +     F A   +FL YG +I    Y  +F+F   + A   ++ ++
Sbjct: 1852 TCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVIN 1911

Query: 122  FFTGLILMVISFIMGLIE---TMAKTNSFLKNPIL 146
             F G+   V +F++ L E    +   NS+LK+  L
Sbjct: 1912 LFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFL 1946

[Close]

BLAST of Cucsa.164320 vs. Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1


Query: 2    VVILIYHMIKISK--------LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPT 61
            VVI I+ ++ +S         L+ E+ TKAKH Q +SG + + YW++ Y+WD +++LVP 
Sbjct: 1793 VVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPA 1852

Query: 62   CLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVH 121
                ++ ++F +  +     F A   +FL YG +I    Y  +F+F   + A   ++ ++
Sbjct: 1853 TCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVIN 1912

Query: 122  FFTGLILMVISFIMGLIE---TMAKTNSFLKNPIL 146
             F G+   V +F++ L E    +   NS+LK+  L
Sbjct: 1913 LFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFL 1947

[Close]

BLAST of Cucsa.164320 vs. Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-15
Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1


Query: 2    VVILIYHMIKISK--------LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPT 61
            VVI I+ ++ +S         L+ E+ TKAKH Q +SG + + YW++ Y+WD +++LVP 
Sbjct: 1793 VVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPA 1852

Query: 62   CLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVH 121
                ++ ++F +  +     F A   +FL YG +I    Y  +F+F   + A   ++ ++
Sbjct: 1853 TCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVIN 1912

Query: 122  FFTGLILMVISFIMGLIE---TMAKTNSFLKNPIL 146
             F G+   V +F++ L E    +   NS+LK+  L
Sbjct: 1913 LFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFL 1947

[Close]

BLAST of Cucsa.164320 vs. Swiss-Prot
Match: ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-15
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1


Query: 16   MQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFL 75
            + ER  +AKH Q +SGV + S+W+S  LWD ISFL+P+ L  V+F  F +  F   G   
Sbjct: 1120 VSERAVQAKHVQFVSGVHVASFWLSALLWDLISFLIPSLLLLVVFKAFDVRAFTRDGHMA 1179

Query: 76   ATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGL----IE 135
             T ++ L YG AI    Y + FFFL    A   +   +  +G+   ++  IM +    +E
Sbjct: 1180 DTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIATFLMVTIMRIPAVKLE 1239

Query: 136  TMAKT 137
             ++KT
Sbjct: 1240 ELSKT 1244

[Close]

BLAST of Cucsa.164320 vs. TrEMBL
Match: A0A0A0KZR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 15  LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
           L++ERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF
Sbjct: 104 LVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 163

Query: 75  LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
           LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA
Sbjct: 164 LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 223

Query: 135 KTNSFLK 142
           KTNSFLK
Sbjct: 224 KTNSFLK 230

[Close]

BLAST of Cucsa.164320 vs. TrEMBL
Match: F6HKV8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08730 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49
Identity = 97/128 (75.78%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            +++ERE KAKHQQ+ISGVS+LSYW STYLWD +SFL+P+  A  LFYIFGMDQFIGKGRF
Sbjct: 1200 IVKEREVKAKHQQLISGVSVLSYWASTYLWDFVSFLLPSSFAITLFYIFGMDQFIGKGRF 1259

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
              T ++FLEYGLAIASSTYCLTF F DHT+AQNVVL +HFFTGL+LMVISFIMGLI+T  
Sbjct: 1260 FPTVLMFLEYGLAIASSTYCLTFSFSDHTMAQNVVLLLHFFTGLVLMVISFIMGLIQTTE 1319

Query: 135  KTNSFLKN 143
             TNS LKN
Sbjct: 1320 STNSVLKN 1327

[Close]

BLAST of Cucsa.164320 vs. TrEMBL
Match: A0A0K9R6R0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107110 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-49
Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1    LVVILIYHMIKIS---KLMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAF 60
            ++V + +  I  S    +++ERE KAKHQQ++SGVS+LSYW STY+WD ISFL+PT  A 
Sbjct: 1169 IIVTIAFSFIPASFAVPIVKEREVKAKHQQLLSGVSILSYWASTYVWDFISFLLPTSFAV 1228

Query: 61   VLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTG 120
            VLFYIFG+DQF+G G F  T IIFLEYGLA+ASSTYC+TFFF DH+VAQNVVL VHFFTG
Sbjct: 1229 VLFYIFGLDQFVGTGGFFPTVIIFLEYGLAVASSTYCMTFFFSDHSVAQNVVLLVHFFTG 1288

Query: 121  LILMVISFIMGLIETMAKTNSFLKN 143
            LILMVISF+MG++ET A  NS LKN
Sbjct: 1289 LILMVISFVMGVMETTASANSHLKN 1313

[Close]

BLAST of Cucsa.164320 vs. TrEMBL
Match: A0A0D2PXZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G146400 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-49
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++E+E KAKHQQ+ISGVS++SYW+STY+WD ISFL P+  A VLFY+FG+DQFIG+G F
Sbjct: 889  LVKEQEVKAKHQQLISGVSVISYWVSTYIWDFISFLFPSTFAIVLFYVFGLDQFIGRG-F 948

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            L T I+FLEYGLAIASSTYCLTFFF DH++AQNVVL +HFFTGLILMVISFIMGLI+T A
Sbjct: 949  LPTVIMFLEYGLAIASSTYCLTFFFSDHSMAQNVVLLIHFFTGLILMVISFIMGLIKTTA 1008

Query: 135  KTNSFLKN 143
              NSFLKN
Sbjct: 1009 SANSFLKN 1015

[Close]

BLAST of Cucsa.164320 vs. TrEMBL
Match: A0A061EWL2_THECC (ABC transporter family, cholesterol/phospholipid flippase isoform 1 OS=Theobroma cacao GN=TCM_024563 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-49
Identity = 96/128 (75.00%), Postives = 113/128 (88.28%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++ERE KAKHQQ+ISGVS++SYW+STY+WD ISFL P+  A +LFY+FG+DQFIG+  F
Sbjct: 1204 LVKEREVKAKHQQLISGVSVISYWVSTYIWDFISFLFPSTFAIILFYVFGLDQFIGRS-F 1263

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            L T I+FLEYGLA+ASSTYCLTFFF DHT+AQNVVL +HFFTGLILMVISFIMGLI+T A
Sbjct: 1264 LPTVIMFLEYGLAVASSTYCLTFFFSDHTMAQNVVLLIHFFTGLILMVISFIMGLIKTTA 1323

Query: 135  KTNSFLKN 143
              NSFLKN
Sbjct: 1324 SANSFLKN 1330

[Close]

BLAST of Cucsa.164320 vs. TAIR10
Match: AT2G41700.1 (AT2G41700.1 ATP-binding cassette A1)

HSP 1 Score: 194.5 bits (493), Expect = 5.4e-50
Identity = 90/128 (70.31%), Postives = 110/128 (85.94%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            +++ERE KAKHQQ+ISGVS+LSYW+STY+WD ISFL P+  A +LFY FG++QFIG GRF
Sbjct: 1197 IVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRF 1256

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            L T ++ LEYGLAIASSTYCLTFFF +H++AQNV+L VHFF+GLILMVISF+MGLI   A
Sbjct: 1257 LPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATA 1316

Query: 135  KTNSFLKN 143
              NS+LKN
Sbjct: 1317 SANSYLKN 1324

[Close]

BLAST of Cucsa.164320 vs. NCBI nr
Match: gi|778692291|ref|XP_011653436.1| (PREDICTED: ABC transporter A family member 1 isoform X5 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++ERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF
Sbjct: 986  LVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 1045

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA
Sbjct: 1046 LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 1105

Query: 135  KTNSFLKN 143
            KTNSFLKN
Sbjct: 1106 KTNSFLKN 1113

[Close]

BLAST of Cucsa.164320 vs. NCBI nr
Match: gi|778692282|ref|XP_011653435.1| (PREDICTED: ABC transporter A family member 1 isoform X4 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++ERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF
Sbjct: 1016 LVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 1075

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA
Sbjct: 1076 LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 1135

Query: 135  KTNSFLKN 143
            KTNSFLKN
Sbjct: 1136 KTNSFLKN 1143

[Close]

BLAST of Cucsa.164320 vs. NCBI nr
Match: gi|778692278|ref|XP_011653434.1| (PREDICTED: ABC transporter A family member 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++ERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF
Sbjct: 1020 LVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 1079

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA
Sbjct: 1080 LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 1139

Query: 135  KTNSFLKN 143
            KTNSFLKN
Sbjct: 1140 KTNSFLKN 1147

[Close]

BLAST of Cucsa.164320 vs. NCBI nr
Match: gi|778692276|ref|XP_011653433.1| (PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++ERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF
Sbjct: 1204 LVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 1263

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA
Sbjct: 1264 LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 1323

Query: 135  KTNSFLKN 143
            KTNSFLKN
Sbjct: 1324 KTNSFLKN 1331

[Close]

BLAST of Cucsa.164320 vs. NCBI nr
Match: gi|778692274|ref|XP_011653432.1| (PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-64
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 15   LMQERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 74
            L++ERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF
Sbjct: 1204 LVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRF 1263

Query: 75   LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 134
            LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA
Sbjct: 1264 LATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMA 1323

Query: 135  KTNSFLKN 143
            KTNSFLKN
Sbjct: 1324 KTNSFLKN 1331

The following BLAST results are available for this feature:

BLAST of Cucsa.164320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB1A_ARATH	9.6e-49	70.31	ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2	[more]
ABCA2_HUMAN	1.4e-15	29.68	ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3	[more]
ABCA2_RAT	1.4e-15	29.68	ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV...	[more]
ABCA2_MOUSE	1.8e-15	29.68	ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4	[more]
ABCA3_HUMAN	4.1e-15	35.20	ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2	[more]

BLAST of Cucsa.164320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZR5_CUCSA	1.3e-63	98.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1	[more]
F6HKV8_VITVI	1.8e-49	75.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08730 PE=4 SV=...	[more]
A0A0K9R6R0_SPIOL	3.9e-49	67.59	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107110 PE=4 SV=1	[more]
A0A0D2PXZ2_GOSRA	5.1e-49	75.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G146400 PE=4 SV=1	[more]
A0A061EWL2_THECC	5.1e-49	75.00	ABC transporter family, cholesterol/phospholipid flippase isoform 1 OS=Theobroma...	[more]

BLAST of Cucsa.164320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41700.1	5.4e-50	70.31	ATP-binding cassette A1	[more]

BLAST of Cucsa.164320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692291\|ref\|XP_011653436.1\|	3.6e-64	98.44	PREDICTED: ABC transporter A family member 1 isoform X5 [Cucumis sativus]	[more]
gi\|778692282\|ref\|XP_011653435.1\|	3.6e-64	98.44	PREDICTED: ABC transporter A family member 1 isoform X4 [Cucumis sativus]	[more]
gi\|778692278\|ref\|XP_011653434.1\|	3.6e-64	98.44	PREDICTED: ABC transporter A family member 1 isoform X3 [Cucumis sativus]	[more]
gi\|778692276\|ref\|XP_011653433.1\|	3.6e-64	98.44	PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus]	[more]
gi\|778692274\|ref\|XP_011653432.1\|	3.6e-64	98.44	PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026082	ABCA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005215	transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.164320.1	Cucsa.164320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026082	ABC transporter A, ABCA	PANTHER	PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	coord: 15..131 score: 1.5
None	No IPR available	PANTHER	PTHR19229:SF36	PROTEIN ABT-4	coord: 15..131 score: 1.5
None	No IPR available	PFAM	PF12698	ABC2_membrane_3	coord: 3..139 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.164320	ClCG04G003390	Watermelon (Charleston Gray)	cgywcgB286
Cucsa.164320	CSPI04G10780	Wild cucumber (PI 183967)	cgycpiB253
Cucsa.164320	MELO3C023103.2	Melon (DHL92) v3.6.1	cgymedB282
Cucsa.164320	CsaV3_4G011860	Cucumber (Chinese Long) v3	cgycucB260

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.164320	Watermelon (97103) v1	cgywmB301
Cucsa.164320	Cucumber (Chinese Long) v2	cgycuB246
Cucsa.164320	Melon (DHL92) v3.5.1	cgymeB287
Cucsa.164320	Cucurbita pepo (Zucchini)	cgycpeB0451
Cucsa.164320	Cucurbita pepo (Zucchini)	cgycpeB0452
Cucsa.164320	Silver-seed gourd	carcgyB0233
Cucsa.164320	Silver-seed gourd	carcgyB0332