Cucsa.162720.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.162720.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ethylene-responsive transcription factor
Location	scaffold01144 : 2244472 .. 2245155 (+)
Sequence length	578

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAGGCATTTTCACAGACACCTTTCCTTCACTATAATTTTCTTCGGGACTAGCTATCTATCTATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGTAAATAACCCAACTTTCTTCAAATTTTTCATCTCTTCTTTTAAACCCCATTTCCTCAAAATCTTTCTATCTCTGTGTTTATGCTCTGTTTTTCTTTTTCTTTCAGGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCGGCCAATTTGACTGCTAAACTCCACCGTTGCTGTATGGCGTCCCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAATTCCGGCGTTGACGTGGCCGGGATTAAGCCGCTGACGGTGGAGGGAAATACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGATATTAATTTAGAAAACAAT

mRNA sequence

TTTCAGGCATTTTCACAGACACCTTTCCTTCACTATAATTTTCTTCGGGACTAGCTATCTATCTATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCGGCCAATTTGACTGCTAAACTCCACCGTTGCTGTATGGCGTCCCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAATTCCGGCGTTGACGTGGCCGGGATTAAGCCGCTGACGGTGGAGGGAAATACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGATATTAATTTAGAAAACAAT

Coding sequence (CDS)

ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCGGCCAATTTGACTGCTAAACTCCACCGTTGCTGTATGGCGTCCCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAATTCCGGCGTTGACGTGGCCGGGATTAAGCCGCTGACGGTGGAGGGAAATACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGA

Protein sequence

MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF*

Homology

[Close]

BLAST of Cucsa.162720.1 vs. Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.0e-55
Identity = 115/177 (64.97%), Postives = 129/177 (72.88%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRF------NSGVDVAGI- 120
           TNFP+N N   +SSSKLLSA LTAKLH+C MASL   K    +       +   D  G+ 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120

Query: 121 -------KPLTVEGNTQTEIGH----QPFVALEEDHIEQMIEELIHYGSVELCSVVP 160
                  + +T     + E G+    Q F  LEEDHIEQMIEEL+HYGS+ELCSV+P
Sbjct: 121 ANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 177

[Close]

BLAST of Cucsa.162720.1 vs. Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-42
Identity = 97/164 (59.15%), Postives = 107/164 (65.24%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPAT-----------HRFNSGVD 120
           TNFP+N N S SSSSKLLSA L AKLHRC MASL   +P++           +    G+ 
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSSLPEAPRIIASPNNAVKGIG 120

Query: 121 V-AGIKPLTVEGNTQTEIGH-----------QPFVALEEDHIEQ 142
             A + P   E   Q   G+           Q F  LEEDHI Q
Sbjct: 121 ADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164

[Close]

BLAST of Cucsa.162720.1 vs. Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-28
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NSND-----------------SNSSSSKLLSANLTAKLHRCC 91
           N+N+                 S+S+SS  LS+ L+AKL +CC
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCC 106

[Close]

BLAST of Cucsa.162720.1 vs. Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 59/93 (63.44%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 FNSNDSNS-------SSSKLLSANLTAKLHRCC 91
            SN SNS        S K LS  L AKL + C
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRKNC 97

[Close]

BLAST of Cucsa.162720.1 vs. Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-23
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NSNDSNSS----------SSKLLSANLTAKLHRCC 91
            ++  S           S K LS  L AKL + C
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSC 99

[Close]

BLAST of Cucsa.162720.1 vs. TrEMBL
Match: A0A0A0LQD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382550 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.1e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG 120
           TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG
Sbjct: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG 120

Query: 121 NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 165
           NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF
Sbjct: 121 NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164

[Close]

BLAST of Cucsa.162720.1 vs. TrEMBL
Match: D5L105_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D21 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 120/176 (68.18%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHR-------FNSGVDVAGI 120
           TNFP+N N S SS+SKLLSA LTAKLHRC MASL   K +           +SG  +  I
Sbjct: 61  TNFPYNPNASQSSASKLLSATLTAKLHRCYMASLQMTKTSLQEPKKPQALASSGAKMPDI 120

Query: 121 KPLT---------VEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPP 161
           KP           V    + E   Q F  LE+DHIEQMIEEL+HYGS+ELCSV+PP
Sbjct: 121 KPEIHQPVAEENWVVREVKVESSSQQFKPLEDDHIEQMIEELLHYGSIELCSVLPP 176

[Close]

BLAST of Cucsa.162720.1 vs. TrEMBL
Match: A0A067FJG7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029507mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-57
Identity = 126/190 (66.32%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQK----------PATH-------- 120
           TNFP+N N S+SSSSKLLSA LTAKLHRC MASL   K          PA+H        
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120

Query: 121 -RFNS-GVDVAGIKPLTVEGNT----------QTEIGHQPFVALEEDHIEQMIEELIHYG 161
            R N  G  +  ++P+ V+G+T          Q EI  Q F  LE+DHIEQMIEEL+ YG
Sbjct: 121 TRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQ-FKPLEDDHIEQMIEELLDYG 180

[Close]

BLAST of Cucsa.162720.1 vs. TrEMBL
Match: V4UBY1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009593mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.3e-57
Identity = 126/190 (66.32%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQK----------PATH-------- 120
           TNFP+N N S+SSSSKLLSA LTAKLHRC MASL   K          PA+H        
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120

Query: 121 -RFNS-GVDVAGIKPLTVEGNT----------QTEIGHQPFVALEEDHIEQMIEELIHYG 161
            R N  G  +  ++P+ V+G+T          Q EI  Q F  LE+DHIEQMIEEL+ YG
Sbjct: 121 TRVNEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQ-FKPLEDDHIEQMIEELLDYG 180

[Close]

BLAST of Cucsa.162720.1 vs. TrEMBL
Match: A0A078EY16_BRANA (BnaA02g32120D protein OS=Brassica napus GN=BnaA02g32120D PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.7e-55
Identity = 118/181 (65.19%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPA-THRFNSGV------DVAGI 120
           TNFP+N N   S SSKLLSA LTAKLH+C MASL   K + T   N+ +      D  G+
Sbjct: 61  TNFPYNPNAIPSPSSKLLSATLTAKLHKCYMASLQMTKQSQTQTQNTRLLPLSLPDTHGV 120

Query: 121 KPLTVEGNTQTEIG---------------HQPFVALEEDHIEQMIEELIHYGSVELCSVV 160
             +T++G TQ   G                Q F  LEEDHIEQMIEEL+HYGS+E CSV+
Sbjct: 121 NNVTLDGGTQYNTGGGVTEMKCEDGNANLKQNFRPLEEDHIEQMIEELLHYGSIEFCSVL 180

[Close]

BLAST of Cucsa.162720.1 vs. TAIR10
Match: AT5G25190.1 (AT5G25190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 215.3 bits (547), Expect = 2.8e-56
Identity = 115/177 (64.97%), Postives = 129/177 (72.88%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRF------NSGVDVAGI- 120
           TNFP+N N   +SSSKLLSA LTAKLH+C MASL   K    +       +   D  G+ 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120

Query: 121 -------KPLTVEGNTQTEIGH----QPFVALEEDHIEQMIEELIHYGSVELCSVVP 160
                  + +T     + E G+    Q F  LEEDHIEQMIEEL+HYGS+ELCSV+P
Sbjct: 121 ANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 177

[Close]

BLAST of Cucsa.162720.1 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-29
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NSND-----------------SNSSSSKLLSANLTAKLHRCC 91
           N+N+                 S+S+SS  LS+ L+AKL +CC
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCC 106

[Close]

BLAST of Cucsa.162720.1 vs. TAIR10
Match: AT5G25390.2 (AT5G25390.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.4e-25
Identity = 59/93 (63.44%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 FNSNDSNS-------SSSKLLSANLTAKLHRCC 91
            SN SNS        S K LS  L AKL + C
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRKNC 97

[Close]

BLAST of Cucsa.162720.1 vs. TAIR10
Match: AT5G11190.1 (AT5G11190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-24
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NSNDSNSS----------SSKLLSANLTAKLHRCC 91
            ++  S           S K LS  L AKL + C
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSC 99

[Close]

BLAST of Cucsa.162720.1 vs. TAIR10
Match: AT1G78080.1 (AT1G78080.1 related to AP2 4)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-20
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 2   ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRART 61
           ++P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD+AA  + G  AR 
Sbjct: 146 SKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 205

Query: 62  NFP-FNSNDSNSSSS----KLLSANLTAKLHRCCMASLHFQK 99
           NFP    N S+        K L +++ AKL   C +    QK
Sbjct: 206 NFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQK 247

[Close]

BLAST of Cucsa.162720.1 vs. NCBI nr
Match: gi|449442154|ref|XP_004138847.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.6e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG 120
           TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG
Sbjct: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG 120

Query: 121 NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 165
           NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF
Sbjct: 121 NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164

[Close]

BLAST of Cucsa.162720.1 vs. NCBI nr
Match: gi|659088964|ref|XP_008445254.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 4.8e-90
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEG 120
           TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSG DVAGIKPLTVEG
Sbjct: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGADVAGIKPLTVEG 120

Query: 121 NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 165
           NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF
Sbjct: 121 NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164

[Close]

BLAST of Cucsa.162720.1 vs. NCBI nr
Match: gi|657971770|ref|XP_008377674.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Malus domestica])

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-57
Identity = 120/176 (68.18%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHR-------FNSGVDVAGI 120
           TNFP+N N S SS+SKLLSA LTAKLHRC MASL   K +           +SG  +  I
Sbjct: 61  TNFPYNPNASQSSASKLLSATLTAKLHRCYMASLQMTKTSLQEPKKPQALASSGAKMPDI 120

Query: 121 KPLT---------VEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPP 161
           KP           V    + E   Q F  LE+DHIEQMIEEL+HYGS+ELCSV+PP
Sbjct: 121 KPEIHQPVAEENWVVREVKVESSSQQFKPLEDDHIEQMIEELLHYGSIELCSVLPP 176

[Close]

BLAST of Cucsa.162720.1 vs. NCBI nr
Match: gi|568859853|ref|XP_006483447.1| (PREDICTED: ethylene-responsive transcription factor ERF003 [Citrus sinensis])

HSP 1 Score: 228.8 bits (582), Expect = 6.9e-57
Identity = 126/190 (66.32%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQK----------PATH-------- 120
           TNFP+N N S+SSSSKLLSA LTAKLHRC MASL   K          PA+H        
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120

Query: 121 -RFNS-GVDVAGIKPLTVEGNT----------QTEIGHQPFVALEEDHIEQMIEELIHYG 161
            R N  G  +  ++P+ V+G+T          Q EI  Q F  LE+DHIEQMIEEL+ YG
Sbjct: 121 TRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQ-FKPLEDDHIEQMIEELLDYG 180

[Close]

BLAST of Cucsa.162720.1 vs. NCBI nr
Match: gi|694312827|ref|XP_009363957.1| (PREDICTED: ethylene-responsive transcription factor ERF003 [Pyrus x bretschneideri])

HSP 1 Score: 228.8 bits (582), Expect = 6.9e-57
Identity = 120/176 (68.18%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHF--------QKPATHRFNSGVDVAG 120
           TNFP+N N S SS+SKLLSA LTAKLHRC MASL          +KP T   +       
Sbjct: 61  TNFPYNPNASQSSASKLLSATLTAKLHRCYMASLQMTKTSLQEPKKPKTLVSSGAKMPEM 120

Query: 121 IKPLTVEG--------NTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPP 161
           I+P   +G          + E   Q F  LE+DHIEQMIEEL+HYGS+ELCSVVPP
Sbjct: 121 IRPEIQQGGEENWVVREVKVESSSQQFKPLEDDHIEQMIEELLHYGSIELCSVVPP 176

The following BLAST results are available for this feature:

BLAST of Cucsa.162720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF03_ARATH	5.0e-55	64.97	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF00...	[more]
PZ02_LUPPO	4.8e-42	59.15	Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1	[more]
WIN1_ARATH	8.8e-28	60.78	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE...	[more]
SHN3_ARATH	1.3e-23	63.44	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3...	[more]
SHN2_ARATH	3.8e-23	58.95	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2...	[more]

BLAST of Cucsa.162720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQD0_CUCSA	1.1e-90	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382550 PE=4 SV=1	[more]
D5L105_MALDO	1.3e-57	68.18	AP2 domain class transcription factor OS=Malus domestica GN=AP2D21 PE=2 SV=1	[more]
A0A067FJG7_CITSI	4.8e-57	66.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029507mg PE=4 SV=1	[more]
V4UBY1_9ROSI	6.3e-57	66.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009593mg PE=4 SV=1	[more]
A0A078EY16_BRANA	2.7e-55	65.19	BnaA02g32120D protein OS=Brassica napus GN=BnaA02g32120D PE=4 SV=1	[more]

BLAST of Cucsa.162720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25190.1	2.8e-56	64.97	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	5.0e-29	60.78	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	7.4e-25	63.44	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	2.2e-24	58.95	Integrase-type DNA-binding superfamily protein	[more]
AT1G78080.1	9.4e-20	49.02	related to AP2 4	[more]

BLAST of Cucsa.162720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442154\|ref\|XP_004138847.1\|	1.6e-90	100.00	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus...	[more]
gi\|659088964\|ref\|XP_008445254.1\|	4.8e-90	99.39	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo]	[more]
gi\|657971770\|ref\|XP_008377674.1\|	1.8e-57	68.18	PREDICTED: ethylene-responsive transcription factor ERF003-like [Malus domestica...	[more]
gi\|568859853\|ref\|XP_006483447.1\|	6.9e-57	66.32	PREDICTED: ethylene-responsive transcription factor ERF003 [Citrus sinensis]	[more]
gi\|694312827\|ref\|XP_009363957.1\|	6.9e-57	68.18	PREDICTED: ethylene-responsive transcription factor ERF003 [Pyrus x bretschneide...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.162720	Cucsa.162720	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.162720.1	Cucsa.162720.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.162720.1.five_prime_UTR.1	Cucsa.162720.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.162720.1.CDS.1	Cucsa.162720.1.CDS.1	CDS
Cucsa.162720.1.CDS.2	Cucsa.162720.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.162720.1.three_prime_UTR.1	Cucsa.162720.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 30..46 score: 2.5E-11coord: 8..19 score: 2.5
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 7..64 score: 1.8
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..56 score: 1.6
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..70 score: 3.8
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 7..64 score: 2
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 7..65 score: 3.6
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..157 score: 5.3
None	No IPR available	PANTHER	PTHR31194:SF4	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003	coord: 1..157 score: 5.3