Cucsa.160980.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.160980.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA polymerase sigma factor
Location	scaffold01144 : 1051714 .. 1054149 (+)
Sequence length	1422

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGTGGGGCAAAGTCACTTGGTCCTATGCATTATGGGATTAAAAGTACCAGGCCATCTAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGCATCTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTCAGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATACCTGTCTATCTAGGACTCTTAAAACTTCAAGTTTTCATGATTCGTCAGGCTTACCCATTGAGGGCGGTGAAGATCACAATGTAAACCAGAAAACCAATGACCAGAATGACAATGTCACAGTTTACTCTGCAAAAAAAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAATGGATAATGCTGATAAAATTGCTTCCCGGCTGCTGACTACAAGAGCTGTTAAAGAAAAAaTCCATAGATCGACTGTATTTTCGAGAAAAAAATCATCTAATTCAAGTAAAAGAAGACTGATTGTTGCAATAAATGAAGCTGAAATGTCCACAGGGGTTAAGGTTGATACATCTTTGATGTTTGCACAACCATCTTTTTGATACATATTATGTTAACATTGCTAAGCTTCTATCTCATTCCAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACCTTAGAAAAGGAATCTGGAAGAATAGCAAGCATGAGTTGTTGGGCTGAAGCTGCCAGTGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTCGTTCTGCCGGGATGAGCTTTTAAGGAGCACTAATTCATTAGTCGTGTTCCTGGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGTCTATTCATTACTGTTCTATGAGAAACCTGAGTGCTTTGAATTTCAATGTATATATTCTTTTAAGCTTTGCTTTTTGAAAAaGTATATGGCATTTTTTCCCTTCAGTTATTCATTGATAATAGCTTATCATTTACAAGTTTCATTTTTTCTTGTATGAAACCAAATTTATAGCACCCTCTAATTCTTTTTGGAGATGAAAAGCAGATAATGGTTTTTtCAGCCTACCACCGTAAATTAAGACGAGAATTGTGCTTGATGATTAAGTATTTCACCAAATTAATGCTCATTAAGGAAATTGATGTCAACATATAAATATGCAAATTTTGAATACTGATGCCTTACGGATAGAAATTCATTTCTCAATAGAAGCACATTAAGGAAAATGCAAGAGCTTATGCATCTTTGATGTTTATTTTCTCTTGGATTCGTAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTTGAAAGGTTTGACCCTAAAAGGGGTTTTAGAATCTCAACATATATTCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCAGTATGATGTCTTTTACACCGGGAGGCGAATTTCATAAAAAATTTCATATTCTTGTATAGCTGACTCATCTTTATAATTCTTTGTAGAGGTCATTAACCAAGGCAATAAATCAGATACAAAAAGCACGAAAAGTGTTGAACCACAGTGGTAGGAGATATTCGGATGACGATATAGCAAGGGCTACTGGACTTCCTTTAGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGAATGATCAGAAGATGGGTGATGGAGTAAATATGAAATATATGGTAGGATTTGCTCTCTCTCCTGTTCCCTCTTTCATTGAGGATTTCATTATGTTTATGGAAAATTGTCAAAAaTAGCGAAGTTGACAAAATATTTACCTTTCATGAAAAAaTAAGTGCAACCTATAGAGTGGAAATAATTTGTTTTTtATATATATTTTTtAAAACCCTATGTTTATTAATTGAGAGTGAAGATTTTGTCTACTAAAGTTGGTTCATCAAAAGCTTATATATTGGTTCAAAATGGCAACGCCAGCTTGTAAAGTTGCGCTAACTTAAAACGATCACGTTTAGAATATCCCTTTGCAGACTTTTACAGTGGGAGTGAAAATCTTAAGAACGATGTTTTCCTTCTGGATGTTACAGATTACAAAACATACGAAAACTCTGATTTGATATAATTTTCTTATGGTGCAGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGAAAGACATCTTTAATATTCTTCAAAGGTTGGAATCAAGGGAGAGGCAGGTCCTGGTGCTGCGTTACGGACTTGTGGATTTTGAACCCAAGTCACTCGAGGAAATTGGAAAACTTCTGCACATAAGCAAGGAATGGGTTCGAAAAATAGAAAAGAAAGCTATGACAAAGCTGAAGAATGAAGAGACTGTGAAGCACTTGAGCCATTACTTGGATTGA

mRNA sequence

ATGAACAGTGGGGCAAAGTCACTTGGTCCTATGCATTATGGGATTAAAAGTACCAGGCCATCTAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGCATCTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTCAGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATACCTGTCTATCTAGGACTCTTAAAACTTCAAGTTTTCATGATTCGTCAGGCTTACCCATTGAGGGCGGTGAAGATCACAATGTAAACCAGAAAACCAATGACCAGAATGACAATGTCACAGTTTACTCTGCAAAAAAAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAATGGATAATGCTGATAAAATTGCTTCCCGGCTGCTGACTACAAGAGCTGTTAAAGAAAAAATCCATAGATCGACTGTATTTTCGAGAAAAAAATCATCTAATTCAAGTAAAAGAAGACTGATTGTTGCAATAAATGAAGCTGAAATGTCCACAGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACCTTAGAAAAGGAATCTGGAAGAATAGCAAGCATGAGTTGTTGGGCTGAAGCTGCCAGTGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTCGTTCTGCCGGGATGAGCTTTTAAGGAGCACTAATTCATTAGTCGTGTTCCTGGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTTGAAAGGTTTGACCCTAAAAGGGGTTTTAGAATCTCAACATATATTCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCAAGGTCATTAACCAAGGCAATAAATCAGATACAAAAAGCACGAAAAGTGTTGAACCACAGTGGTAGGAGATATTCGGATGACGATATAGCAAGGGCTACTGGACTTCCTTTAGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGAATGATCAGAAGATGGGTGATGGAGTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGAAAGACATCTTTAATATTCTTCAAAGGTTGGAATCAAGGGAGAGGCAGGTCCTGGTGCTGCGTTACGGACTTGTGGATTTTGAACCCAAGTCACTCGAGGAAATTGGAAAACTTCTGCACATAAGCAAGGAATGGGTTCGAAAAATAGAAAAGAAAGCTATGACAAAGCTGAAGAATGAAGAGACTGTGAAGCACTTGAGCCATTACTTGGATTGA

Coding sequence (CDS)

ATGAACAGTGGGGCAAAGTCACTTGGTCCTATGCATTATGGGATTAAAAGTACCAGGCCATCTAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGCATCTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTCAGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATACCTGTCTATCTAGGACTCTTAAAACTTCAAGTTTTCATGATTCGTCAGGCTTACCCATTGAGGGCGGTGAAGATCACAATGTAAACCAGAAAACCAATGACCAGAATGACAATGTCACAGTTTACTCTGCAAAAAAAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAATGGATAATGCTGATAAAATTGCTTCCCGGCTGCTGACTACAAGAGCTGTTAAAGAAAAAaTCCATAGATCGACTGTATTTTCGAGAAAAAAATCATCTAATTCAAGTAAAAGAAGACTGATTGTTGCAATAAATGAAGCTGAAATGTCCACAGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACCTTAGAAAAGGAATCTGGAAGAATAGCAAGCATGAGTTGTTGGGCTGAAGCTGCCAGTGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTCGTTCTGCCGGGATGAGCTTTTAAGGAGCACTAATTCATTAGTCGTGTTCCTGGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTTGAAAGGTTTGACCCTAAAAGGGGTTTTAGAATCTCAACATATATTCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCAAGGTCATTAACCAAGGCAATAAATCAGATACAAAAAGCACGAAAAGTGTTGAACCACAGTGGTAGGAGATATTCGGATGACGATATAGCAAGGGCTACTGGACTTCCTTTAGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGAATGATCAGAAGATGGGTGATGGAGTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGAAAGACATCTTTAATATTCTTCAAAGGTTGGAATCAAGGGAGAGGCAGGTCCTGGTGCTGCGTTACGGACTTGTGGATTTTGAACCCAAGTCACTCGAGGAAATTGGAAAACTTCTGCACATAAGCAAGGAATGGGTTCGAAAAATAGAAAAGAAAGCTATGACAAAGCTGAAGAATGAAGAGACTGTGAAGCACTTGAGCCATTACTTGGATTGA

Protein sequence

MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD*

Homology

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BLAST of Cucsa.160980.1 vs. Swiss-Prot
Match: SIGC_ARATH (RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC PE=2 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 3.0e-105
Identity = 212/444 (47.75%), Postives = 298/444 (67.12%), Query Frame = 1


Query: 41  FGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSR---TLKTSSFHDSS 100
           + +L +NL  LEETF     + +ERDI+LQ+ KLGA E F TCLSR   +  TS   D++
Sbjct: 148 YNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDTT 207

Query: 101 GLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAM------DNADKIASRLLTT 160
            L               D   N  V+ +    RR VKK+A       +N D+ +S  +  
Sbjct: 208 ELV--------------DTTPNQQVFVSS---RRKVKKKARRSSVTAENGDQ-SSLPIGL 267

Query: 161 RAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIA 220
           R     I    V   ++     K+R  ++ NE EMSTGVK+VA++ERIR  LE+ESG++A
Sbjct: 268 RTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVA 327

Query: 221 SMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGA 280
           S+SCWA AA ++ K L + L +G +CRDEL++ST SLV+FLA+ YR  G+  EDL+QAG 
Sbjct: 328 SLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGY 387

Query: 281 LGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKV 340
           +GVLQG ERFD  RG++ STY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK 
Sbjct: 388 VGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKT 447

Query: 341 L--NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSI 400
           L  +H  +  +D++IA+ TG  + K+R A+ CLKVVGS D+K+GD    K++EFT D ++
Sbjct: 448 LKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTM 507

Query: 401 QSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVR 460
           +SPEE V R+  ++DI ++L+ LE RE+QV+VLRYGL D+ PKSLEEIGKLL +SKEW+R
Sbjct: 508 ESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIR 567

Query: 461 KIEKKAMTKLKNEETVKHLSHYLD 474
           KIE++AM KL+++   + L +YL+
Sbjct: 568 KIERRAMAKLRDQPNAEDLRYYLN 570

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BLAST of Cucsa.160980.1 vs. Swiss-Prot
Match: SIGB_ARATH (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-54
Identity = 122/399 (30.58%), Postives = 229/399 (57.39%), Query Frame = 1


Query: 81  NTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDN 140
           N  +S  +  S+ +  S   +E  +   V       + ++ V S ++  R++ + + ++ 
Sbjct: 171 NGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEK 230

Query: 141 AD------KIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVA 200
                   K  S     R V +++  +      + + SS + L V   E E+S G++ + 
Sbjct: 231 TASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVR-EEHELSAGIQDLL 290

Query: 201 NLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAK 260
            LER++  L + SGR  + + WA AA VD K L++++  G+ C+D++++S   LV+ +AK
Sbjct: 291 KLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAK 350

Query: 261 KYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQI 320
            Y+ +G+ ++DLVQ G  G+++G E+FD  +GF+ STY  +WI++++ + ++  SR I++
Sbjct: 351 NYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRL 410

Query: 321 PRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMG 380
           P  + +A  ++++ARK L + +G+   +++IA ATGL + ++       K   S DQK+G
Sbjct: 411 PFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIG 470

Query: 381 DGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKS 440
              N+K  E  AD    + E+ + ++ M++D+  +L  L +RE+QV+  R+G+ D   K+
Sbjct: 471 MNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 530

Query: 441 LEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL 473
           L+EIG+++ +S+E VR+IE  A  KLKN++   HL  YL
Sbjct: 531 LQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568

[Close]

BLAST of Cucsa.160980.1 vs. Swiss-Prot
Match: SIGA_NOSS1 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=sigA PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.3e-46
Identity = 105/322 (32.61%), Postives = 190/322 (59.01%), Query Frame = 1


Query: 152 RAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIA 211
           R   +K H +    R       + RL+ A  E E++  +  +  LER+RE L ++  R  
Sbjct: 69  RTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDP 128

Query: 212 SMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGA 271
             S WAEA  + +   + +L  G   +D++++S   LVV +AKKY   GL  +DL+Q G+
Sbjct: 129 RDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 188

Query: 272 LGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKV 331
           LG+++  E+FD ++G++ STY  +WIR++++R +A  SR I++P  L + I++I+K  K+
Sbjct: 189 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKL 248

Query: 332 LNHS-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQ 391
           L+   GR+ ++++IA    + + K+R  +   ++  S +  +G   + +  +F  +   +
Sbjct: 249 LSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF-IESDGE 308

Query: 392 SPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRK 451
           +PE+ V + L+++D+  +L  L  RER VL LRYGL D   K+LEEIG++ ++++E +R+
Sbjct: 309 TPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 368

Query: 452 IEKKAMTKLKNEETVKHLSHYL 473
           IE KA+ KL++      L  Y+
Sbjct: 369 IEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of Cucsa.160980.1 vs. Swiss-Prot
Match: SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) GN=sigA1 PE=3 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 2.1e-45
Identity = 107/339 (31.56%), Postives = 198/339 (58.41%), Query Frame = 1


Query: 137 AMDNADKIASRLLTTRAVKEKIHRSTVFS--RKKSSNSSKRRLIVAINEAEMSTGVKVVA 196
           A+D+ D +          K K+ ++      R       + RL+ A  E E++  +  + 
Sbjct: 61  AIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLL 120

Query: 197 NLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAK 256
            LERIR+ L ++  R+ S + WA A    + + +++L  G   +D++++S   LVV +AK
Sbjct: 121 ALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAK 180

Query: 257 KYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQI 316
           KY   GL  +DL+Q G+LG+++  E+FD ++G++ STY  +WIR++++R +A  SR I++
Sbjct: 181 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 240

Query: 317 PRSLTKAINQIQKARKVLNHS-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMG 376
           P  L + I++I+K  K+L+   GR+ ++++IA    + + K+R  +   ++  S +  +G
Sbjct: 241 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 300

Query: 377 DGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKS 436
              + +  +F  +   ++PE+ V + L+++D+  +L  L  RER VL LRYGL D   K+
Sbjct: 301 KEEDSRLGDF-IEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKT 360

Query: 437 LEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL 473
           LEEIG+L ++++E +R+IE KA+ KL++      L  Y+
Sbjct: 361 LEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Cucsa.160980.1 vs. Swiss-Prot
Match: SIGF_ARATH (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.3e-41
Identity = 92/300 (30.67%), Postives = 174/300 (58.00%), Query Frame = 1


Query: 175 RRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG 234
           ++L+ A  EAE+ + ++ +  LE+++  LE ++G   ++  WAEA  +    L+  +  G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304

Query: 235 SFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQ 294
              R++L+ +   LVV +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G R +TY  
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364

Query: 295 YWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGR-RYSDDDIARATGLPLA 354
           +WIR+S+ + + +NSR I++P ++   + ++ +ARK     G  R S +++A   G+   
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424

Query: 355 KVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE 414
           K+       +   S  Q +    +  + E T D  I++P  +V ++LM+  + N+L  L 
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 484

Query: 415 SRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
            +ER+++ LR+G+   + +SL EIG++  +SKE VR++E +A+ +LK       L  Y D
Sbjct: 485 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD 544

[Close]

BLAST of Cucsa.160980.1 vs. TrEMBL
Match: A0A0A0LLW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372830 PE=4 SV=1)

HSP 1 Score: 920.6 bits (2378), Expect = 7.7e-265
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 1


Query: 1   MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM 60
           MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM
Sbjct: 88  MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM 147

Query: 61  LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV 120
           LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV
Sbjct: 148 LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV 207

Query: 121 TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 180
           TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA
Sbjct: 208 TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 267

Query: 181 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 240
           INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE
Sbjct: 268 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 327

Query: 241 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 300
           LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS
Sbjct: 328 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 387

Query: 301 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN 360
           MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN
Sbjct: 388 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN 447

Query: 361 CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL 420
           CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL
Sbjct: 448 CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL 507

Query: 421 VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
Sbjct: 508 VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 560

[Close]

BLAST of Cucsa.160980.1 vs. TrEMBL
Match: A0A061GKA9_THECC (RNApolymerase sigma-subunit C, putative OS=Theobroma cacao GN=TCM_037242 PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 4.5e-140
Identity = 261/450 (58.00%), Postives = 346/450 (76.89%), Query Frame = 1


Query: 25  DNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCL 84
           D  SS TS    KAS + +LMENLDVLEETF +S +L+LER+I+LQL + GAL+ FNTCL
Sbjct: 399 DKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCL 458

Query: 85  SRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKI 144
           SRTLK S+  D S +P   G D N+N   + Q DN+ V S KK  R+ +++RA++N   I
Sbjct: 459 SRTLKASNILDLSDVPANSG-DCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTII 518

Query: 145 ASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLE 204
           +++L+ +  +  +  +  V S K+ S+S  RRL +A NEAEMS GVKVVANLERIR TLE
Sbjct: 519 STQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLE 578

Query: 205 KESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPME 264
           +E+GR AS+SCWAEAA V  K LQ+ L+FG +CRDELLRST SLV++ A+ YR  G+  E
Sbjct: 579 EETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHE 638

Query: 265 DLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQ 324
           DL+QAG+LGVLQG ERFD  RG+R STY+Q+WIRKS+SR+VAR++RGIQ+P +L++AI Q
Sbjct: 639 DLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQ 698

Query: 325 IQKARKVLNHSGRRYSDDD-IARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEF 384
           IQKARK L+ S  +Y D+D IA+ TGL LAK+R A+ C++VVGS DQK+GD +N KY+EF
Sbjct: 699 IQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEF 758

Query: 385 TADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHI 444
             D+S++SPE+TV R+ MK+DI ++L  L++RERQV+VLRYGL    PKSLEEIG+L H+
Sbjct: 759 IPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHV 818

Query: 445 SKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           SKEW+R+IE KAM KL+++ET ++LSHYLD
Sbjct: 819 SKEWIRRIEMKAMKKLRDKETCRNLSHYLD 847

[Close]

BLAST of Cucsa.160980.1 vs. TrEMBL
Match: A0A067KGK9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07709 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.2e-132
Identity = 258/474 (54.43%), Postives = 352/474 (74.26%), Query Frame = 1


Query: 4   GAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSL 63
           G +SL  ++  I   +    ED+F   +S    + S F +L+ENL++LEE+F +S +L L
Sbjct: 92  GKRSLSGLNDTIDDAQVFIKEDDFVPPSS-SKDRTSNFSLLLENLNILEESFADSDVLKL 151

Query: 64  ERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVT 123
           ERDI+LQL KLGAL+ FNTCL+RTL+  T++  D S LP E  ++   +  +N     + 
Sbjct: 152 ERDILLQLGKLGALKLFNTCLTRTLEVQTANVLDFSDLPTENIQECKRDGTSNGNVYKII 211

Query: 124 VYSAKKAGRRSVKKRA-MDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 183
           V + KK  R+S ++RA + N  K+    L  ++++    ++T F  KK+SNS  RRL++A
Sbjct: 212 VCTGKKEERKSRRERASLKNGHKVPCFPLPLKSIQNGRGKATSFD-KKTSNSKSRRLMIA 271

Query: 184 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 243
            NEAEMS GVKV+ANLE+IR TLE+E+GR  S+SCWAEAA +D+K LQ+QL FG +CRDE
Sbjct: 272 RNEAEMSRGVKVLANLEKIRTTLEQETGRAVSLSCWAEAAGLDMKVLQQQLHFGWYCRDE 331

Query: 244 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 303
           L+RST SLV+FLA+ YR  G+ +EDL+QAG +GVLQG ERFD  RG+R STY+QYWIRKS
Sbjct: 332 LVRSTRSLVLFLARNYRGMGIALEDLLQAGNMGVLQGAERFDDARGYRFSTYVQYWIRKS 391

Query: 304 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDD-DIARATGLPLAKVRVAS 363
           MS++V+R++RGIQIP +L++AINQIQKARK L+ S  +Y DD DIA  TGL LAK+  AS
Sbjct: 392 MSKIVSRHARGIQIPCTLSRAINQIQKARKNLSASHGKYPDDEDIAEFTGLSLAKIESAS 451

Query: 364 NCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQV 423
            CL+VVGS DQKMGD  N KY+EF  D +I+SPEE V R+ M KD+ ++L+ L++RERQV
Sbjct: 452 RCLRVVGSIDQKMGDCFNAKYLEFIHDTTIKSPEEAVMRQHMIKDMHDLLRGLDTRERQV 511

Query: 424 LVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           L+LRYGL D +PKSLEEIG++ H+SKEWVR++EKK MT+L+NEET ++L +Y++
Sbjct: 512 LILRYGLKDHQPKSLEEIGRVFHVSKEWVRRLEKKVMTRLRNEETCRNLRYYVN 563

[Close]

BLAST of Cucsa.160980.1 vs. TrEMBL
Match: M5XDD1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003696mg PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 3.5e-132
Identity = 253/451 (56.10%), Postives = 340/451 (75.39%), Query Frame = 1


Query: 24  EDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTC 83
           E  F S   L    AS F +L++NL+VLEETF  S +L LE++I+LQL +LGAL+ F+ C
Sbjct: 106 EGKFISSKGLEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDIC 165

Query: 84  LSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADK 143
           LSRTLKTSSF D S +P    E+  + +K ++    + V S KK  RRS +KR  DNA  
Sbjct: 166 LSRTLKTSSFLDLSDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRS-RKRTSDNAI- 225

Query: 144 IASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETL 203
           ++S  L  + + + + + T+ S K++SN   RRL ++ NEAEMS GVKV+A+LERI+ETL
Sbjct: 226 VSSNSLPPKTIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETL 285

Query: 204 EKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPM 263
           EKE+G++A++ CWAEAA V  K L + L+FG +C+DEL+RST SLV++LA+ YR  G+ +
Sbjct: 286 EKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVAL 345

Query: 264 EDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAIN 323
           +DL+QAG LG+LQG ERFD  RG+R STY+QYWIRKSMSR+VA+++RG+QIP +L+KAIN
Sbjct: 346 DDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAIN 405

Query: 324 QIQKARKVLNHSGRRYSDD-DIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYME 383
           QIQKARK   +S  +Y DD +IA+ TGL LA++R AS CL+VVGS D KM +  +  YME
Sbjct: 406 QIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYME 465

Query: 384 FTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLH 443
           FT D S++SPEETV R+ MKKDI ++L+ L  RERQVLVLRYGL +++PKSLEEIG+L H
Sbjct: 466 FTPDTSLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFH 525

Query: 444 ISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           +SKEW+RKIEKKA+ KL+ EE+ K+LSHYL+
Sbjct: 526 VSKEWIRKIEKKALMKLRVEESHKYLSHYLN 554

[Close]

BLAST of Cucsa.160980.1 vs. TrEMBL
Match: B9RRX0_RICCO (RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_0798990 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.1e-130
Identity = 251/478 (52.51%), Postives = 351/478 (73.43%), Query Frame = 1


Query: 1   MNSGAKSLGPMHYGIKSTRPSKV---EDNFSSCTSLPTGKASPFGILMENLDVLEETFTE 60
           +N G +S    H+G+     ++V   ED F S +S    + S F +L+ENL++LE++F +
Sbjct: 87  VNFGKRS----HFGLNIIGDAEVSLKEDIFVSPSSTKE-RTSRFSLLLENLNILEQSFAD 146

Query: 61  SGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQN 120
           S    LE DI+LQL KLGAL+ FNTCL+RTL+T++  + S +  E   + N+N  + +  
Sbjct: 147 SDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQ 206

Query: 121 DNVTVYSAKKAGRRSVKKRAMDN-ADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRR 180
             V V++AKK  R+S ++RA      K  S  L +R ++    + TV S KK+S S  RR
Sbjct: 207 IKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRR 266

Query: 181 LIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSF 240
           LI+A NEAEM+ G+KV+A+LE+IR TLE+E+ R+ S+SCWAEAA +D+K LQ+QL FG +
Sbjct: 267 LIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWY 326

Query: 241 CRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYW 300
           CRDEL++ST SLV++ A+ YR +G+ +EDL+QAG LGVL+G ERFD  RG+R STY+QYW
Sbjct: 327 CRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYW 386

Query: 301 IRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDD-IARATGLPLAKV 360
           IRKSMS++V+R +RGIQIP +L++AI QIQKARK L  S  +Y DDD IA+ TGL LAK+
Sbjct: 387 IRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKI 446

Query: 361 RVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESR 420
             AS CL+VVGS DQK+G+ +N KY+EF  D S+QSPEE V R+ M +D+ N+L+ L+SR
Sbjct: 447 ESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSR 506

Query: 421 ERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           ERQVL+LR+GL D++PKSLEEIG+  H+SKEWVR++EK+ MT+L+NEET ++L HY++
Sbjct: 507 ERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYIN 559

[Close]

BLAST of Cucsa.160980.1 vs. TAIR10
Match: AT3G53920.1 (AT3G53920.1 RNApolymerase sigma-subunit C)

HSP 1 Score: 383.6 bits (984), Expect = 1.7e-106
Identity = 212/444 (47.75%), Postives = 298/444 (67.12%), Query Frame = 1


Query: 41  FGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSR---TLKTSSFHDSS 100
           + +L +NL  LEETF     + +ERDI+LQ+ KLGA E F TCLSR   +  TS   D++
Sbjct: 148 YNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDTT 207

Query: 101 GLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAM------DNADKIASRLLTT 160
            L               D   N  V+ +    RR VKK+A       +N D+ +S  +  
Sbjct: 208 ELV--------------DTTPNQQVFVSS---RRKVKKKARRSSVTAENGDQ-SSLPIGL 267

Query: 161 RAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIA 220
           R     I    V   ++     K+R  ++ NE EMSTGVK+VA++ERIR  LE+ESG++A
Sbjct: 268 RTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVA 327

Query: 221 SMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGA 280
           S+SCWA AA ++ K L + L +G +CRDEL++ST SLV+FLA+ YR  G+  EDL+QAG 
Sbjct: 328 SLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGY 387

Query: 281 LGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKV 340
           +GVLQG ERFD  RG++ STY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK 
Sbjct: 388 VGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKT 447

Query: 341 L--NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSI 400
           L  +H  +  +D++IA+ TG  + K+R A+ CLKVVGS D+K+GD    K++EFT D ++
Sbjct: 448 LKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTM 507

Query: 401 QSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVR 460
           +SPEE V R+  ++DI ++L+ LE RE+QV+VLRYGL D+ PKSLEEIGKLL +SKEW+R
Sbjct: 508 ESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIR 567

Query: 461 KIEKKAMTKLKNEETVKHLSHYLD 474
           KIE++AM KL+++   + L +YL+
Sbjct: 568 KIERRAMAKLRDQPNAEDLRYYLN 570

[Close]

BLAST of Cucsa.160980.1 vs. TAIR10
Match: AT1G08540.1 (AT1G08540.1 RNApolymerase sigma subunit 2)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-55
Identity = 122/399 (30.58%), Postives = 229/399 (57.39%), Query Frame = 1


Query: 81  NTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDN 140
           N  +S  +  S+ +  S   +E  +   V       + ++ V S ++  R++ + + ++ 
Sbjct: 171 NGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEK 230

Query: 141 AD------KIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVA 200
                   K  S     R V +++  +      + + SS + L V   E E+S G++ + 
Sbjct: 231 TASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVR-EEHELSAGIQDLL 290

Query: 201 NLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAK 260
            LER++  L + SGR  + + WA AA VD K L++++  G+ C+D++++S   LV+ +AK
Sbjct: 291 KLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAK 350

Query: 261 KYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQI 320
            Y+ +G+ ++DLVQ G  G+++G E+FD  +GF+ STY  +WI++++ + ++  SR I++
Sbjct: 351 NYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRL 410

Query: 321 PRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMG 380
           P  + +A  ++++ARK L + +G+   +++IA ATGL + ++       K   S DQK+G
Sbjct: 411 PFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIG 470

Query: 381 DGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKS 440
              N+K  E  AD    + E+ + ++ M++D+  +L  L +RE+QV+  R+G+ D   K+
Sbjct: 471 MNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 530

Query: 441 LEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL 473
           L+EIG+++ +S+E VR+IE  A  KLKN++   HL  YL
Sbjct: 531 LQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568

[Close]

BLAST of Cucsa.160980.1 vs. TAIR10
Match: AT2G36990.1 (AT2G36990.1 RNApolymerase sigma-subunit F)

HSP 1 Score: 170.2 bits (430), Expect = 3.0e-42
Identity = 92/300 (30.67%), Postives = 174/300 (58.00%), Query Frame = 1


Query: 175 RRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG 234
           ++L+ A  EAE+ + ++ +  LE+++  LE ++G   ++  WAEA  +    L+  +  G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304

Query: 235 SFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQ 294
              R++L+ +   LVV +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G R +TY  
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364

Query: 295 YWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGR-RYSDDDIARATGLPLA 354
           +WIR+S+ + + +NSR I++P ++   + ++ +ARK     G  R S +++A   G+   
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424

Query: 355 KVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE 414
           K+       +   S  Q +    +  + E T D  I++P  +V ++LM+  + N+L  L 
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 484

Query: 415 SRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
            +ER+++ LR+G+   + +SL EIG++  +SKE VR++E +A+ +LK       L  Y D
Sbjct: 485 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD 544

[Close]

BLAST of Cucsa.160980.1 vs. TAIR10
Match: AT5G13730.1 (AT5G13730.1 sigma factor 4)

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-36
Identity = 100/304 (32.89%), Postives = 166/304 (54.61%), Query Frame = 1


Query: 172 SSKRRLIVAINEAEMSTGVKVVANLERIRETLEKE---SGRIASMSCWAEAASVDIKDLQ 231
           +S+   +  + E ++   +K  A LE +  ++E+    S  +AS     + ++ +I   +
Sbjct: 117 ASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANEILCRR 176

Query: 232 KQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR 291
           K+       R+++ R    LVV +A  Y+  GL ++DL+Q G++G+L+G ERFDP RG++
Sbjct: 177 KE------AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 236

Query: 292 ISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRY-SDDDIARA 351
           +STY+ +WI++++ R +A  SR +++P S+ +   ++ +A  VL    RR  S ++IA  
Sbjct: 237 LSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEH 296

Query: 352 TGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFN 411
             L ++ VR+A    +   S D+       M   E         PEE VKR+ MK +I  
Sbjct: 297 LNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQ 356

Query: 412 ILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKH 471
           +L  L +RE +VL L +GL    P S EEIGK L +S+E VR+I   A+ KL+N   V  
Sbjct: 357 LLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVND 414

[Close]

BLAST of Cucsa.160980.1 vs. TAIR10
Match: AT1G64860.1 (AT1G64860.1 sigma factor A)

HSP 1 Score: 125.6 bits (314), Expect = 8.4e-29
Identity = 87/287 (30.31%), Postives = 150/287 (52.26%), Query Frame = 1


Query: 181 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 240
           +    +S  +K    L+  +  L+   G   S    A +  +   +LQ  L      R++
Sbjct: 203 VEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREK 262

Query: 241 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 300
           L  S   LV+ +A++Y   G  M DLVQ G +G+L+G+E+FD  +GFRISTY+ +WIR+ 
Sbjct: 263 LAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQG 322

Query: 301 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN 360
           +SR +  NSR +++P  L + +  I+ A+  L   G   S D IA +  +   KVR A+ 
Sbjct: 323 VSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATE 382

Query: 361 CLKVVGSNDQKMGDGVN----MKYMEFTADMSIQ-SPEETVKRKLMKKDIFNILQ-RLES 420
            +  V S D+     +N      +  + AD  ++ +P        +K+++  ++   L  
Sbjct: 383 AVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGE 442

Query: 421 RERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKN 462
           RE++++ L YGL D E  + E+I K + +S+E VR++   A+ KLK+
Sbjct: 443 REKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 488

[Close]

BLAST of Cucsa.160980.1 vs. NCBI nr
Match: gi|778671949|ref|XP_004148429.2| (PREDICTED: RNA polymerase sigma factor sigC [Cucumis sativus])

HSP 1 Score: 920.6 bits (2378), Expect = 1.1e-264
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 1


Query: 1   MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM 60
           MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM
Sbjct: 88  MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM 147

Query: 61  LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV 120
           LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV
Sbjct: 148 LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV 207

Query: 121 TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 180
           TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA
Sbjct: 208 TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 267

Query: 181 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 240
           INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE
Sbjct: 268 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 327

Query: 241 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 300
           LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS
Sbjct: 328 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 387

Query: 301 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN 360
           MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN
Sbjct: 388 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN 447

Query: 361 CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL 420
           CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL
Sbjct: 448 CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL 507

Query: 421 VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
Sbjct: 508 VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 560

[Close]

BLAST of Cucsa.160980.1 vs. NCBI nr
Match: gi|659088439|ref|XP_008444981.1| (PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo])

HSP 1 Score: 851.3 bits (2198), Expect = 8.2e-244
Identity = 437/473 (92.39%), Postives = 452/473 (95.56%), Query Frame = 1


Query: 1   MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGM 60
           MNSGAKSL  +HYGIKSTRPSKVEDNFSS TS+PTGKASPFGILMENLDVLEETF ESGM
Sbjct: 88  MNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGM 147

Query: 61  LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNV 120
           LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKTNDQN +V
Sbjct: 148 LSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDV 207

Query: 121 TVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 180
           TVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA
Sbjct: 208 TVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVA 267

Query: 181 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 240
            NEAEMSTG+KVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG FCRDE
Sbjct: 268 RNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDE 327

Query: 241 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 300
           LLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKS
Sbjct: 328 LLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKS 387

Query: 301 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASN 360
           MSRVVARNSRGIQIP SLTKAINQIQKARKVLN  GRRYSDDDIARATGLPLAKVRVASN
Sbjct: 388 MSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASN 447

Query: 361 CLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVL 420
           CLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKRKLMKKDIFNILQ LESRERQVL
Sbjct: 448 CLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNILQGLESRERQVL 507

Query: 421 VLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           VLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Sbjct: 508 VLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVKNLSHYLD 560

[Close]

BLAST of Cucsa.160980.1 vs. NCBI nr
Match: gi|590573790|ref|XP_007012219.1| (RNApolymerase sigma-subunit C, putative [Theobroma cacao])

HSP 1 Score: 506.1 bits (1302), Expect = 6.5e-140
Identity = 261/450 (58.00%), Postives = 346/450 (76.89%), Query Frame = 1


Query: 25  DNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCL 84
           D  SS TS    KAS + +LMENLDVLEETF +S +L+LER+I+LQL + GAL+ FNTCL
Sbjct: 399 DKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCL 458

Query: 85  SRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKI 144
           SRTLK S+  D S +P   G D N+N   + Q DN+ V S KK  R+ +++RA++N   I
Sbjct: 459 SRTLKASNILDLSDVPANSG-DCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTII 518

Query: 145 ASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLE 204
           +++L+ +  +  +  +  V S K+ S+S  RRL +A NEAEMS GVKVVANLERIR TLE
Sbjct: 519 STQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLE 578

Query: 205 KESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPME 264
           +E+GR AS+SCWAEAA V  K LQ+ L+FG +CRDELLRST SLV++ A+ YR  G+  E
Sbjct: 579 EETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHE 638

Query: 265 DLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQ 324
           DL+QAG+LGVLQG ERFD  RG+R STY+Q+WIRKS+SR+VAR++RGIQ+P +L++AI Q
Sbjct: 639 DLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQ 698

Query: 325 IQKARKVLNHSGRRYSDDD-IARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEF 384
           IQKARK L+ S  +Y D+D IA+ TGL LAK+R A+ C++VVGS DQK+GD +N KY+EF
Sbjct: 699 IQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEF 758

Query: 385 TADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHI 444
             D+S++SPE+TV R+ MK+DI ++L  L++RERQV+VLRYGL    PKSLEEIG+L H+
Sbjct: 759 IPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHV 818

Query: 445 SKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           SKEW+R+IE KAM KL+++ET ++LSHYLD
Sbjct: 819 SKEWIRRIEMKAMKKLRDKETCRNLSHYLD 847

[Close]

BLAST of Cucsa.160980.1 vs. NCBI nr
Match: gi|658058623|ref|XP_008365120.1| (PREDICTED: RNA polymerase sigma factor sigC-like [Malus domestica])

HSP 1 Score: 485.7 bits (1249), Expect = 9.1e-134
Identity = 253/451 (56.10%), Postives = 341/451 (75.61%), Query Frame = 1


Query: 24  EDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTC 83
           + +F S   L    A+ F +L++NLD LEETF  S +L LE +I+ QL +LGAL+ FN  
Sbjct: 109 DGDFRSSKGLEACSAAHFSLLLKNLDALEETFANSDVLKLENEILSQLGRLGALQLFNAY 168

Query: 84  LSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADK 143
           LSRTL +SSF D S +P    E++ +++K ++      V+S KK  RRS +KRA DNA +
Sbjct: 169 LSRTLTSSSFXDLSDIPTVPIEEYKMDKKVDNDRGKTIVWSGKKEERRS-RKRASDNA-R 228

Query: 144 IASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETL 203
           ++S LL+ +   E     TV S K++S S +RR  + +NEAE+STGVKV+A LER++ TL
Sbjct: 229 VSSELLSPKTTWEGFKPPTVSSAKRASXSRRRRXTIVLNEAELSTGVKVIAKLERVKATL 288

Query: 204 EKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPM 263
           EKE+G +A++SCWAEAA V  K L ++L FG +C+DEL+RST SLV++LA+ YR  G+ M
Sbjct: 289 EKETGTVATLSCWAEAAGVHKKVLLQKLHFGWYCQDELIRSTRSLVLYLARSYRGLGVAM 348

Query: 264 EDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAIN 323
           +DL+QAG LG+LQG ER+DP RG+R STY++YWI+KSMSR+VAR++RGIQIP +L+KAIN
Sbjct: 349 DDLLQAGNLGLLQGAERYDPSRGYRFSTYVRYWIKKSMSRLVARHARGIQIPFTLSKAIN 408

Query: 324 QIQKARKVLNHSGRRYSDDD-IARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYME 383
           QIQKARK   +S  +Y DDD IA+ TGL LA+++ AS CL+VVGS D+KM D     +ME
Sbjct: 409 QIQKARKATYNSQMKYPDDDEIAKITGLSLARIKSASTCLRVVGSIDEKMWDSSAGTFME 468

Query: 384 FTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLH 443
           FTAD SI+SPEETV R+ MKKDI ++L+ L S+ERQVLVLRYGL +++PKSLEEIGKL  
Sbjct: 469 FTADKSIKSPEETVTRQHMKKDIHDLLKCLNSKERQVLVLRYGLNNYDPKSLEEIGKLFD 528

Query: 444 ISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           +SKEW+RKIEKKA+TKL+++ET + LSHYL+
Sbjct: 529 VSKEWIRKIEKKALTKLRDDETHRSLSHYLN 557

[Close]

BLAST of Cucsa.160980.1 vs. NCBI nr
Match: gi|643724937|gb|KDP34138.1| (hypothetical protein JCGZ_07709 [Jatropha curcas])

HSP 1 Score: 481.5 bits (1238), Expect = 1.7e-132
Identity = 258/474 (54.43%), Postives = 352/474 (74.26%), Query Frame = 1


Query: 4   GAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSL 63
           G +SL  ++  I   +    ED+F   +S    + S F +L+ENL++LEE+F +S +L L
Sbjct: 92  GKRSLSGLNDTIDDAQVFIKEDDFVPPSS-SKDRTSNFSLLLENLNILEESFADSDVLKL 151

Query: 64  ERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVT 123
           ERDI+LQL KLGAL+ FNTCL+RTL+  T++  D S LP E  ++   +  +N     + 
Sbjct: 152 ERDILLQLGKLGALKLFNTCLTRTLEVQTANVLDFSDLPTENIQECKRDGTSNGNVYKII 211

Query: 124 VYSAKKAGRRSVKKRA-MDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVA 183
           V + KK  R+S ++RA + N  K+    L  ++++    ++T F  KK+SNS  RRL++A
Sbjct: 212 VCTGKKEERKSRRERASLKNGHKVPCFPLPLKSIQNGRGKATSFD-KKTSNSKSRRLMIA 271

Query: 184 INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 243
            NEAEMS GVKV+ANLE+IR TLE+E+GR  S+SCWAEAA +D+K LQ+QL FG +CRDE
Sbjct: 272 RNEAEMSRGVKVLANLEKIRTTLEQETGRAVSLSCWAEAAGLDMKVLQQQLHFGWYCRDE 331

Query: 244 LLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS 303
           L+RST SLV+FLA+ YR  G+ +EDL+QAG +GVLQG ERFD  RG+R STY+QYWIRKS
Sbjct: 332 LVRSTRSLVLFLARNYRGMGIALEDLLQAGNMGVLQGAERFDDARGYRFSTYVQYWIRKS 391

Query: 304 MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDD-DIARATGLPLAKVRVAS 363
           MS++V+R++RGIQIP +L++AINQIQKARK L+ S  +Y DD DIA  TGL LAK+  AS
Sbjct: 392 MSKIVSRHARGIQIPCTLSRAINQIQKARKNLSASHGKYPDDEDIAEFTGLSLAKIESAS 451

Query: 364 NCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQV 423
            CL+VVGS DQKMGD  N KY+EF  D +I+SPEE V R+ M KD+ ++L+ L++RERQV
Sbjct: 452 RCLRVVGSIDQKMGDCFNAKYLEFIHDTTIKSPEEAVMRQHMIKDMHDLLRGLDTRERQV 511

Query: 424 LVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 474
           L+LRYGL D +PKSLEEIG++ H+SKEWVR++EKK MT+L+NEET ++L +Y++
Sbjct: 512 LILRYGLKDHQPKSLEEIGRVFHVSKEWVRRLEKKVMTRLRNEETCRNLRYYVN 563

The following BLAST results are available for this feature:

BLAST of Cucsa.160980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIGC_ARATH	3.0e-105	47.75	RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC PE=2 SV=1	[more]
SIGB_ARATH	1.9e-54	30.58	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB PE=2 SV=2	[more]
SIGA_NOSS1	9.3e-46	32.61	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...	[more]
SIGA1_SYNE7	2.1e-45	31.56	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) G...	[more]
SIGF_ARATH	5.3e-41	30.67	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF ...	[more]

BLAST of Cucsa.160980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW1_CUCSA	7.7e-265	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372830 PE=4 SV=1	[more]
A0A061GKA9_THECC	4.5e-140	58.00	RNApolymerase sigma-subunit C, putative OS=Theobroma cacao GN=TCM_037242 PE=4 SV...	[more]
A0A067KGK9_JATCU	1.2e-132	54.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07709 PE=4 SV=1	[more]
M5XDD1_PRUPE	3.5e-132	56.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003696mg PE=4 SV=1	[more]
B9RRX0_RICCO	1.1e-130	52.51	RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_0798990 P...	[more]

BLAST of Cucsa.160980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53920.1	1.7e-106	47.75	RNApolymerase sigma-subunit C	[more]
AT1G08540.1	1.1e-55	30.58	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	3.0e-42	30.67	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	2.4e-36	32.89	sigma factor 4	[more]
AT1G64860.1	8.4e-29	30.31	sigma factor A	[more]

BLAST of Cucsa.160980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671949\|ref\|XP_004148429.2\|	1.1e-264	100.00	PREDICTED: RNA polymerase sigma factor sigC [Cucumis sativus]	[more]
gi\|659088439\|ref\|XP_008444981.1\|	8.2e-244	92.39	PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo]	[more]
gi\|590573790\|ref\|XP_007012219.1\|	6.5e-140	58.00	RNApolymerase sigma-subunit C, putative [Theobroma cacao]	[more]
gi\|658058623\|ref\|XP_008365120.1\|	9.1e-134	56.10	PREDICTED: RNA polymerase sigma factor sigC-like [Malus domestica]	[more]
gi\|643724937\|gb\|KDP34138.1\|	1.7e-132	54.43	hypothetical protein JCGZ_07709 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000943	RNA_pol_sigma70
IPR007624	RNA_pol_sigma70_r3
IPR007627	RNA_pol_sigma70_r2
IPR007630	RNA_pol_sigma70_r4
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR013324	RNA_pol_sigma_r3/r4-like
IPR013325	RNA_pol_sigma_r2
IPR014284	RNA_pol_sigma-70_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding
GO:0016987	sigma factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.160980	Cucsa.160980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.160980.1	Cucsa.160980.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.160980.1.CDS.1	Cucsa.160980.1.CDS.1	CDS
Cucsa.160980.1.CDS.2	Cucsa.160980.1.CDS.2	CDS
Cucsa.160980.1.CDS.3	Cucsa.160980.1.CDS.3	CDS
Cucsa.160980.1.CDS.4	Cucsa.160980.1.CDS.4	CDS
Cucsa.160980.1.CDS.5	Cucsa.160980.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 448..459 score: 2.2E-17coord: 433..448 score: 2.2E-17coord: 265..278 score: 2.2E-17coord: 289..297 score: 2.2E-17coord: 412..424 score: 2.2
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 321..395 score: 3.
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 243..310 score: 4.3
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 409..460 score: 2.6
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 404..473 score: 4.5E-21coord: 311..358 score: 1.
IPR013324	RNA polymerase sigma factor, region 3/4	unknown	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 372..462 score: 6.92
IPR013325	RNA polymerase sigma factor, region 2	unknown	SSF88946	Sigma2 domain of RNA polymerase sigma factors	coord: 181..310 score: 6.12
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAMs	TIGR02937	TIGR02937	coord: 238..461 score: 2.0
None	No IPR available	GENE3D	G3DSA:1.10.601.10		coord: 128..310 score: 8.0
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 156..473 score: 1.2E
None	No IPR available	PANTHER	PTHR30603:SF13	RNA POLYMERASE SIGMA FACTOR SIGC	coord: 156..473 score: 1.2E