Cucsa.152670.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.AGCTTTCTTATGGAACCTAATACAGTACACTGTGCTTAGCCCCTCGATGTGTTGCCTTTGCTTCAAAGGAGAGGAAACCTTGGACCACATATTTTTGCACTGTCTTTTTACTAGGAAAGCTTGGAACACTTTGTTTAGAATTTTTTATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGCTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCCTGAAAAGAAACATGTTATGGAGATGTGCTACTCGGTCCCTTTTGTGGTACATTTGGAAAGAAAGGAATAGAAGAATTTTTTAG AGCTTTCTTATGGAACCTAATAcagtacactgtgcttagcccctcgatgtgttgcctttgcttcaaaggagaggaaaccttggaccacatatttttgcactgtctttttactaggaaagcttggaacactttgtttagaattttttatttggagctttgtcttcctagtaaggttgatagctggttgattgaagggctcaacattagaggttatagcctgaaaagaaacatgttatggagatgtgctactcggtcccttttgtggtacatttggaaagaaaggaatagaagaattttttag AGCTTTCTTATGGAACCTAATACAGTACACTGTGCTTAGCCCCTCGATGTGTTGCCTTTGCTTCAAAGGAGAGGAAACCTTGGACCACATATTTTTGCACTGTCTTTTTACTAGGAAAGCTTGGAACACTTTGTTTAGAATTTTTTATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGCTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCCTGAAAAGAAACATGTTATGGAGATGTGCTACTCGGTCCCTTTTGTGGTACATTTGGAAAGAAAGGAATAGAAGAATTTTTTAG AFLWNLIQYTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNIRGYSLKRNMLWRCATRSLLWYIWKERNRRIF*
BLAST of Cucsa.152670.1 vs. TrEMBL
Match: A5BI72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13 Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. TrEMBL
Match: A5BHW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 4.4e-13 Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. TrEMBL
Match: A5BCI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13 Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. TrEMBL
Match: A5AI05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13 Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. TrEMBL
Match: F6H108_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13 Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. TAIR10
Match: AT5G18880.1 (AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06 Identity = 29/92 (31.52%), Postives = 45/92 (48.91%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. NCBI nr
Match: gi|778690261|ref|XP_011653085.1| (PREDICTED: uncharacterized protein LOC105435174 [Cucumis sativus]) HSP 1 Score: 92.4 bits (228), Expect = 4.7e-16 Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. NCBI nr
Match: gi|147839313|emb|CAN72359.1| (hypothetical protein VITISV_000131 [Vitis vinifera]) HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13 Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. NCBI nr
Match: gi|147835140|emb|CAN76904.1| (hypothetical protein VITISV_016347 [Vitis vinifera]) HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13 Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. NCBI nr
Match: gi|147811389|emb|CAN65484.1| (hypothetical protein VITISV_029474 [Vitis vinifera]) HSP 1 Score: 81.6 bits (200), Expect = 8.3e-13 Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1
BLAST of Cucsa.152670.1 vs. NCBI nr
Match: gi|147845854|emb|CAN80093.1| (hypothetical protein VITISV_010721 [Vitis vinifera]) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12 Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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