Cucsa.152670 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.152670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01124 : 70001 .. 70301 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTTCTTATGGAACCTAATACAGTACACTGTGCTTAGCCCCTCGATGTGTTGCCTTTGCTTCAAAGGAGAGGAAACCTTGGACCACATATTTTTGCACTGTCTTTTTACTAGGAAAGCTTGGAACACTTTGTTTAGAATTTTTTATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGCTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCCTGAAAAGAAACATGTTATGGAGATGTGCTACTCGGTCCCTTTTGTGGTACATTTGGAAAGAAAGGAATAGAAGAATTTTTTAG

mRNA sequence

AGCTTTCTTATGGAACCTAATAcagtacactgtgcttagcccctcgatgtgttgcctttgcttcaaaggagaggaaaccttggaccacatatttttgcactgtctttttactaggaaagcttggaacactttgtttagaattttttatttggagctttgtcttcctagtaaggttgatagctggttgattgaagggctcaacattagaggttatagcctgaaaagaaacatgttatggagatgtgctactcggtcccttttgtggtacatttggaaagaaaggaatagaagaattttttag

Coding sequence (CDS)

AGCTTTCTTATGGAACCTAATACAGTACACTGTGCTTAGCCCCTCGATGTGTTGCCTTTGCTTCAAAGGAGAGGAAACCTTGGACCACATATTTTTGCACTGTCTTTTTACTAGGAAAGCTTGGAACACTTTGTTTAGAATTTTTTATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGCTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCCTGAAAAGAAACATGTTATGGAGATGTGCTACTCGGTCCCTTTTGTGGTACATTTGGAAAGAAAGGAATAGAAGAATTTTTTAG

Protein sequence

AFLWNLIQYTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNIRGYSLKRNMLWRCATRSLLWYIWKERNRRIF*
Homology
[Close]
BLAST of Cucsa.152670 vs. TrEMBL
Match: A5BI72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           Y  LSP +C LC K  ET+DH+FLHC  T   W+ LF+   ++   P  +   L    N 
Sbjct: 637 YKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDMLASNFNG 696

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G+S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 697 FGFSKRGIVLWQNACIALMWVVWRERNARIF 727

[Close]
BLAST of Cucsa.152670 vs. TrEMBL
Match: A5BHW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-13
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           Y  LSP++C LC K  ET+DH+FLHC  T+  W+ LF++  ++   P  +        N 
Sbjct: 819 YKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSIFDMFFTNFNG 878

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 879 FGSSKRGVVLWQDACIALMWVVWRERNARIF 909

[Close]
BLAST of Cucsa.152670 vs. TrEMBL
Match: A5BCI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 9    YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
            Y  LSP +C LC K  ET+DH+FLHC  T   W+ LF+   ++   P  +   L    N 
Sbjct: 1747 YKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDMLSSNFNG 1806

Query: 69   RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
             G+S +  +LW+ A  +++W +W+ERN RIF
Sbjct: 1807 FGFSKRGIVLWQNACIAIMWVVWRERNARIF 1837

[Close]
BLAST of Cucsa.152670 vs. TrEMBL
Match: A5AI05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           Y  LSP +C LC K  ET+DH+FLHC  T   W+ LF+   ++   P  +   L    N 
Sbjct: 896 YKALSPDICKLCMKYGETVDHLFLHCSLTMGLWHRLFQSVKMDWVSPRSISDMLSSNFNG 955

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 956 FGSSKRGIVLWQNACIALMWVVWRERNARIF 986

[Close]
BLAST of Cucsa.152670 vs. TrEMBL
Match: F6H108_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           +  LSP++C LC K  ET+DH+FLHC  T+  W+ LF++  ++   P  +        N 
Sbjct: 49  HKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNG 108

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 109 FGSSKRGVVLWQDACIALMWVVWRERNARIF 139

[Close]
BLAST of Cucsa.152670 vs. TAIR10
Match: AT5G18880.1 (AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 29/92 (31.52%), Postives = 45/92 (48.91%), Query Frame = 1 

Query: 14  PSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPS------KVDSWLIEGLN 73
           PS   LC  G+ET  H+F  C F+   W      F+     PS         SW+++ L 
Sbjct: 166 PSSWVLCSNGDETHAHLFFECSFSLAIWE-----FFASKFRPSPPFGLPAASSWILQ-LP 225

Query: 74  IRGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
           +R +S     + +   +S ++++WKERN RIF
Sbjct: 226 LRSHS---TTILKLLLQSAVYHVWKERNARIF 248

[Close]
BLAST of Cucsa.152670 vs. NCBI nr
Match: gi|778690261|ref|XP_011653085.1| (PREDICTED: uncharacterized protein LOC105435174 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-16
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1 

Query: 2   FLWNL--------------IQYTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRI 61
           FLW+L              + Y  L+PSMCCLCF+ EETLD +FLHC F  K W+ LFRI
Sbjct: 129 FLWSLSYRSLNTHDKLQRKLHYATLNPSMCCLCFRNEETLDQLFLHCEFVMKGWSFLFRI 188

Query: 62  FYLELCLPSKVDSWLIEGLNIRGYSLK 75
             L+ CLPSK  SW+++G+N + +  K
Sbjct: 189 LNLDCCLPSKTASWMLDGVNSKAFRPK 215

[Close]
BLAST of Cucsa.152670 vs. NCBI nr
Match: gi|147839313|emb|CAN72359.1| (hypothetical protein VITISV_000131 [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           Y  LSP +C LC K  ET+DH+FLHC  T   W+ LF+   ++   P  +   L    N 
Sbjct: 637 YKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDMLASNFNG 696

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G+S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 697 FGFSKRGIVLWQNACIALMWVVWRERNARIF 727

[Close]
BLAST of Cucsa.152670 vs. NCBI nr
Match: gi|147835140|emb|CAN76904.1| (hypothetical protein VITISV_016347 [Vitis vinifera])

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           Y  LSP++C LC K  ET+DH+FLHC  T+  W+ LF++  ++   P  +        N 
Sbjct: 819 YKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSIFDMFFTNFNG 878

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 879 FGSSKRGVVLWQDACIALMWVVWRERNARIF 909

[Close]
BLAST of Cucsa.152670 vs. NCBI nr
Match: gi|147811389|emb|CAN65484.1| (hypothetical protein VITISV_029474 [Vitis vinifera])

HSP 1 Score: 81.6 bits (200), Expect = 8.3e-13
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 9    YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
            Y  LSP +C LC K  ET+DH+FLHC  T   W+ LF+   ++   P  +   L    N 
Sbjct: 1747 YKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDMLSSNFNG 1806

Query: 69   RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
             G+S +  +LW+ A  +++W +W+ERN RIF
Sbjct: 1807 FGFSKRGIVLWQNACIAIMWVVWRERNARIF 1837

[Close]
BLAST of Cucsa.152670 vs. NCBI nr
Match: gi|147845854|emb|CAN80093.1| (hypothetical protein VITISV_010721 [Vitis vinifera])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 

Query: 9   YTVLSPSMCCLCFKGEETLDHIFLHCLFTRKAWNTLFRIFYLELCLPSKVDSWLIEGLNI 68
           Y  LSP +C LC K  ET+DH+FLHC  T   W+ LF+   ++   P  +   L    N 
Sbjct: 896 YKALSPDICKLCMKYGETVDHLFLHCSLTMGLWHRLFQSVKMDWVSPRSISDMLSSNFNG 955

Query: 69  RGYSLKRNMLWRCATRSLLWYIWKERNRRIF 100
            G S +  +LW+ A  +L+W +W+ERN RIF
Sbjct: 956 FGSSKRGIVLWQNACIALMWVVWRERNARIF 986

The following BLAST results are available for this feature:
BLAST of Cucsa.152670 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BI72_VITVI2.6e-1340.66Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1[more]
A5BHW7_VITVI4.4e-1339.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1[more]
A5BCI7_VITVI5.8e-1339.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1[more]
A5AI05_VITVI7.6e-1340.66Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1[more]
F6H108_VITVI7.6e-1338.46Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=... [more]
BLAST of Cucsa.152670 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18880.13.6e-0631.52 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
BLAST of Cucsa.152670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690261|ref|XP_011653085.1|4.7e-1647.13PREDICTED: uncharacterized protein LOC105435174 [Cucumis sativus][more]
gi|147839313|emb|CAN72359.1|3.7e-1340.66hypothetical protein VITISV_000131 [Vitis vinifera][more]
gi|147835140|emb|CAN76904.1|6.4e-1339.56hypothetical protein VITISV_016347 [Vitis vinifera][more]
gi|147811389|emb|CAN65484.1|8.3e-1339.56hypothetical protein VITISV_029474 [Vitis vinifera][more]
gi|147845854|emb|CAN80093.1|1.1e-1240.66hypothetical protein VITISV_010721 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.152670.1Cucsa.152670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 13..41
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.152670Cucurbita pepo (Zucchini)cgycpeB0409
Cucsa.152670Cucurbita pepo (Zucchini)cgycpeB0410
Cucsa.152670Bottle gourd (USVL1VR-Ls)cgylsiB245
Cucsa.152670Melon (DHL92) v3.6.1cgymedB255
Cucsa.152670Silver-seed gourdcarcgyB0580
Cucsa.152670Cucumber (Chinese Long) v3cgycucB232
Cucsa.152670Watermelon (97103) v2cgywmbB259
Cucsa.152670Wax gourdcgywgoB298
Cucsa.152670Cucurbita maxima (Rimu)cgycmaB0424
Cucsa.152670Cucurbita maxima (Rimu)cgycmaB0423
Cucsa.152670Cucurbita moschata (Rifu)cgycmoB0423
Cucsa.152670Cucurbita moschata (Rifu)cgycmoB0424
Cucsa.152670Wild cucumber (PI 183967)cgycpiB225
Cucsa.152670Cucumber (Chinese Long) v2cgycuB220
Cucsa.152670Melon (DHL92) v3.5.1cgymeB257
Cucsa.152670Watermelon (Charleston Gray)cgywcgB258
Cucsa.152670Watermelon (97103) v1cgywmB272