Cucsa.148030.4 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.148030.4
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein thf1
Location	scaffold01107 : 286320 .. 288666 (+)
Sequence length	1211

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TttAGATTGAATGTTATAATGAGTATTAGAAGTTTTAAGTAACTATTAAGCTTCCAATAGTTCAGTTGGATCAGTTCTGTACTTGTGTAGTTTGTTGAGAGATTTCTCTAGTTCGTTTTCTTACTACTATAGGTTAGAAACTGATGCGCTATTTTGACGGCTCAGATGTGACCACTGTGGCCGAGACAAAATTGAACTTCCTTAAGGCCTATAAACGGCCTATCCCTAGTATTTACAACACGGTTCTGCAAGAATTGATTGTTCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCTCTTGGATTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGAAGCCATCTTCCAAGCGTATATTAAGGCTTTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCTCTAATCTCTATCAATTGTTGTCACTTGTCAGCTAGAAACTTCAGTTGCCTTATTGTTAAGTTTAAAAATCACCAACACGATTCCCTTTGGCTGTCTAAATGACTAAATTGGATTTGTATTGAATGTTAGTGCATGCTCGAAAAGTAGTATTAGAGACTTTTATTTGTACCTAGTAAACAAATTTACGAATGTTCATTTTTTATATTTCAAAAAGGGTTTTCTTTATTTTAAGTAATAACTTTTGTTATATCATCCAGAATTGATGCTAAAAAATTTGAAGAGTGGGCTCGATCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTATTTTGAAGGACATTGCAGAAAGAGCAGGGAGCAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTATTTCGTCTCCTTGAATTGGCAAATGCTACTGAGCCCAGTATCTTGGAAAAGGTTTCTTTAATATTCCTTTCTGTGATATAGCTTTTAAGTAGTTGAGATTTTGATGACATTCTTATCGAGTTGATTATAGCTAAATTAAATGACAGCCAGCCTCTCTTGTAGGACTTTTATCAATAGATGTTATCTCTGAGTGCTGCCATTAATAAAGTATAATAGTGTTTCTGGTTCATTAGTTTtCTTTTTACTCGTTAGAGAAATTGGATCTTGATGGAATATTGCCTAACATACTGTTCGAGACGAGAGAATTAGGTTCAAAGGCTTCTTTTGTGCATAAGGCTGCATTTTATTTTCTGGCTAACTAGTCTTTTGGAACATTTGTCTTTCCCCTTTCCTCCCTTGCCGCTGACCCATCACACACACACATACTATTGTCGGATTTCCTTTCACCCTTGTGAAGGCCGATTCTATTTACTGTGTCTATCACTGAAGATAAGATACTTTTGATCTCTTAAAACAGCTCAAGCTATGTAGTCGAACAGTTTATAAAACAGCAGAAGTCATATGATAGAGAATTAACCGGGTATTGAGATCTAATTTCTTGGTACTTCTGAACAGCTCTGTGCCGCTTTAAATATCGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGTAACCTGCTTTCAAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGACAGGTAAGAGACTGTTAAGTTCATGGTTCTAGGCATGGTAGATTAATATGCTCTTTAAAGCCCTCATATTTTCAGACTTTATGAAAATCTACAATCGAATTGAAAACTGTCTCAATCTTGTATTTGTGAAATCTCCTGCAAGTCACTATCATAGCATTTATATTCATTGGATCTTATCTGAGGTCTATATGAGGTAGACAATTGGGTGGATGATGGTGGTTGTAGGAGTAAGATTTAAAGGATAGAAGTTATATGATTAACCAGCGGGTTTTGAATTGTGTAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAAAAGGTAATTGGAGTCGCTACATAATTTGAGATAGACTTGAGAGAGTTTATAGCAACATTATTCTAAATACTTGTTAGATATGCATCTATAATGTATTATGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCACGGCTCTACCTTTATTTCTCATTTGATATAACCACCACTCAAGCTATTTTTTAATCATTTGTATTACATACTTTGAGTGCAACTGTCAATACAAAATGCTTTCGCACTCTGTGCAGTAATCACTCCTCCAGGGATATTTGACCATCTGCCTTTTGTATTGTTATCCTTTCTGTATTATTCTGATATTTGGCTATTTGCTTTTGTATGATC

mRNA sequence

tttAGATTGAATGTTATAATGAGTATTAGAAGTTTTAAGTAACTATTAAGCTTCCAATAGTTCAGTTGGATCAGTTCTGTACTTGTGTAGTTTGTTGAGAGATTTCTCTAGTTCGTTTTCTTACTACTATAGGTTAGAAACTGATGCGCTATTTTGACGGCTCAGATGTGACCACTGTGGCCGAGACAAAATTGAACTTCCTTAAGGCCTATAAACGGCCTATCCCTAGTATTTACAACACGGTTCTGCAAGAATTGATTGTTCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCTCTTGGATTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGAAGCCATCTTCCAAGCGTATATTAAGGCTTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTTGAAGAGTGGGCTCGATCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTATTTTGAAGGACATTGCAGAAAGAGCAGGGAGCAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTATTTCGTCTCCTTGAATTGGCAAATGCTACTGAGCCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATATCGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGTAACCTGCTTTCAAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGACAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAAAAGGTAATTGGAGTCGCTACATAATTTGAGATAGACTTGAGAGAGTTTATAGCAACATTATTCTAAATACTTGTTAGATATGCATCTATAATGTATTATGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCACGGCTCTACCTTTATTTCTCATTTGATATAACCACCACTCAAGCTATTTTTTAATCATTTGTATTACATACTTTGAGTGCAACTGTCAATACAAAATGCTTTCGCACTCTGTGCAGTAATCACTCCTCCAGGGATATTTGACCATCTGCCTTTTGTATTGTTATCCTTTCTGTATTATTCTGATATTTGGCTATTTGCTTTTGTATGATC

Coding sequence (CDS)

ATGCGCTATTTTGACGGCTCAGATGTGACCACTGTGGCCGAGACAAAATTGAACTTCCTTAAGGCCTATAAACGGCCTATCCCTAGTATTTACAACACGGTTCTGCAAGAATTGATTGTTCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCTCTTGGATTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGAAGCCATCTTCCAAGCGTATATTAAGGCTTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTTGAAGAGTGGGCTCGATCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTATTTTGAAGGACATTGCAGAAAGAGCAGGGAGCAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTATTTCGTCTCCTTGAATTGGCAAATGCTACTGAGCCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATATCGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGTAACCTGCTTTCAAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGACAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAA

Protein sequence

MRYFDGSDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL*

Homology

[Close]

BLAST of Cucsa.148030.4 vs. Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-103
Identity = 184/226 (81.42%), Postives = 213/226 (94.25%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +DV  V+ETK  FLKAYKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGFVTVYD
Sbjct: 62  ADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYD 121

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPSD+DR+AIF+AYI+ALNEDP+QYRIDA+K EEWARSQT+ASLV+F+S+EG++E
Sbjct: 122 QLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIE 181

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           ++LKDIA RAGSK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LNI+KK VDRDLD
Sbjct: 182 AVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLD 241

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 233
           VYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE I+KCLG+
Sbjct: 242 VYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

[Close]

BLAST of Cucsa.148030.4 vs. Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-98
Identity = 175/227 (77.09%), Postives = 205/227 (90.31%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +D+ TVA+TKL FL AYKRPIP++YNTVLQELIVQQHL RYK++Y+YDPVFALGFVTVYD
Sbjct: 63  ADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYD 122

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPS+EDR AIF+AYI+AL EDPEQYR DA+K EEWAR+Q A +LV+F+S+EGE+E
Sbjct: 123 QLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIE 182

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           +I KDIA+RAG+K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALN++KK VDRDLD
Sbjct: 183 NIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLD 242

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 234
           VYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE +TKCLG+Y
Sbjct: 243 VYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKCLGDY 288

[Close]

BLAST of Cucsa.148030.4 vs. Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.5e-97
Identity = 175/218 (80.28%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 11  TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLME 70
           TVAETK+NFLK+YKRPI SIY+TVLQEL+VQQHLMRYK TY+YD VFALGFVTVYDQLME
Sbjct: 60  TVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLME 119

Query: 71  GYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVESILK 130
           GYPS+EDR+AIF+AYI ALNEDPEQYR DA+K EEWARSQ   SLVEF+S++GE+E+ILK
Sbjct: 120 GYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILK 179

Query: 131 DIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRN 190
           DI+ERA  KG+FSYSRFFA+GLFRLLELANATEP+IL+KLCAALNI+K+ VDRDLDVYRN
Sbjct: 180 DISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRN 239

Query: 191 LLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 229
           +LSKLVQAKELLKEYV+REKKKR+ER+ +  +NEA+TK
Sbjct: 240 ILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

[Close]

BLAST of Cucsa.148030.4 vs. Swiss-Prot
Match: THF1_ACAM1 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-36
Identity = 81/220 (36.82%), Postives = 136/220 (61.82%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D
Sbjct: 2   NNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFD 61

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEF---ASREG 126
           + M+GY  + D++AIF A  KA   DP Q + D ++  E A+S++A  ++++   A+  G
Sbjct: 62  RFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSG 121

Query: 127 --EVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAAL 186
             E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  L
Sbjct: 122 GDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVL 181

Query: 187 NIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 215
           NI +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 182 NISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

[Close]

BLAST of Cucsa.148030.4 vs. Swiss-Prot
Match: THF1_TRIEI (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34
Identity = 77/220 (35.00%), Postives = 130/220 (59.09%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           ++  TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D
Sbjct: 2   NNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFD 61

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           + M+GY   ED+ +IF A I+   EDP +YR DAK  E+ A   +A+ ++ +      ++
Sbjct: 62  RFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNID 121

Query: 127 S--ILKDIAERAGSKGNFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNID 186
           +   L+D          F YSR FAIGLF LLE+ +             L+K+C +LN+ 
Sbjct: 122 NTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLV 181

Query: 187 KKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERA 218
           ++ + +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 182 EEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

[Close]

BLAST of Cucsa.148030.4 vs. TrEMBL
Match: A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 4.2e-126
Identity = 233/234 (99.57%), Postives = 234/234 (100.00%), Query Frame = 1


Query: 6   GSDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 65
           G+DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY
Sbjct: 65  GTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 124

Query: 66  DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV 125
           DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV
Sbjct: 125 DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV 184

Query: 126 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 185
           ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL
Sbjct: 185 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 244

Query: 186 DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 240
           DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL
Sbjct: 245 DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cucsa.148030.4 vs. TrEMBL
Match: A0A061E4M4_THECC (Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.3e-106
Identity = 195/226 (86.28%), Postives = 215/226 (95.13%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +DV TV+ETKLNFLKAYKRPIPS+YNTVLQELIVQQHLMRYK TYRYD VFALGFVTVYD
Sbjct: 67  TDVPTVSETKLNFLKAYKRPIPSVYNTVLQELIVQQHLMRYKWTYRYDAVFALGFVTVYD 126

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPSDEDR+AIFQAYIKAL EDP+QYRIDA+K EEWARSQT++SLVEF+SR+GEVE
Sbjct: 127 QLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARSQTSSSLVEFSSRDGEVE 186

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           +ILKDIAERAG  G+FSYSRFFA+GLFRLLELANATEP++LEKLCAALNI+K+ VDRDLD
Sbjct: 187 AILKDIAERAGRMGSFSYSRFFAVGLFRLLELANATEPTVLEKLCAALNINKRSVDRDLD 246

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 233
           VYRNLLSKLVQAKELLKEYVDREKKKR+ER+ SQ ANEA+ KCLGE
Sbjct: 247 VYRNLLSKLVQAKELLKEYVDREKKKREERSESQKANEAVKKCLGE 292

[Close]

BLAST of Cucsa.148030.4 vs. TrEMBL
Match: A0A0D2V4U5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 4.8e-106
Identity = 193/227 (85.02%), Postives = 214/227 (94.27%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +D  TV+ETK +FLKAYKRPIPS+YNTVLQELIVQQHLMRYK+TYRYD VFALGFVTVYD
Sbjct: 67  TDTPTVSETKSSFLKAYKRPIPSVYNTVLQELIVQQHLMRYKKTYRYDAVFALGFVTVYD 126

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPSDEDR+AIFQAYI AL EDP+QYR DA+K EEWAR+QT++SLVEF+SR+GEVE
Sbjct: 127 QLMEGYPSDEDRDAIFQAYINALKEDPQQYRADAQKLEEWARAQTSSSLVEFSSRDGEVE 186

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           +ILKDIAERAGSKG+FSYSRFFAIGLFRLLELANATEP++LEKLCAALNIDK+ VDRDLD
Sbjct: 187 AILKDIAERAGSKGSFSYSRFFAIGLFRLLELANATEPTVLEKLCAALNIDKRSVDRDLD 246

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 234
           VYRNLLSKLVQAKELLKEYVDREKKKR+ER+ S  ANEA+ KCLGEY
Sbjct: 247 VYRNLLSKLVQAKELLKEYVDREKKKREERSESPKANEAVKKCLGEY 293

[Close]

BLAST of Cucsa.148030.4 vs. TrEMBL
Match: F6HHI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.4e-105
Identity = 194/227 (85.46%), Postives = 210/227 (92.51%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +DV TV+ETK+NFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTYRYD VFALGFVTVYD
Sbjct: 66  TDVPTVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGFVTVYD 125

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLM+GYPSDEDR+ IFQ YIKAL EDPEQYR DA+  EEWARSQTA+SLVEF+S+EGEVE
Sbjct: 126 QLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSKEGEVE 185

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
            ILKDIAERAG KG+FSYSRFFAIGLFRLLELANATEP+ILEKLCAA NI K+ VDRDLD
Sbjct: 186 GILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSVDRDLD 245

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 234
           VYRNLL+KLVQAKELLKEYVDREKKKR+ER  SQ ANEAITKCLGEY
Sbjct: 246 VYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGEY 292

[Close]

BLAST of Cucsa.148030.4 vs. TrEMBL
Match: A0A067EL53_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022333mg PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 5.3e-105
Identity = 194/228 (85.09%), Postives = 210/228 (92.11%), Query Frame = 1


Query: 7   SDVT-TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 66
           SDV  TVAETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTY+YDPVFALGFVTVY
Sbjct: 3   SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62

Query: 67  DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV 126
           D+LMEGYPS+EDREAIFQAYI AL EDPEQYRIDA+K EEWAR QTA+SLVEF S+EGEV
Sbjct: 63  DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122

Query: 127 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 186
           E +LKDIAERA  KGNFSYSRFFA+GLFRLLELANATEP++LEKLCA LN++K+ VDRDL
Sbjct: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182

Query: 187 DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 234
           DVYRNLLSKL+QAKELLKEYVDREKKKR+ER   Q ANEAI KCLGEY
Sbjct: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEY 230

[Close]

BLAST of Cucsa.148030.4 vs. TAIR10
Match: AT2G20890.1 (AT2G20890.1 photosystem II reaction center PSB29 protein)

HSP 1 Score: 377.5 bits (968), Expect = 6.2e-105
Identity = 184/226 (81.42%), Postives = 213/226 (94.25%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +DV  V+ETK  FLKAYKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGFVTVYD
Sbjct: 62  ADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYD 121

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPSD+DR+AIF+AYI+ALNEDP+QYRIDA+K EEWARSQT+ASLV+F+S+EG++E
Sbjct: 122 QLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIE 181

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           ++LKDIA RAGSK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LNI+KK VDRDLD
Sbjct: 182 AVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLD 241

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 233
           VYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE I+KCLG+
Sbjct: 242 VYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

[Close]

BLAST of Cucsa.148030.4 vs. NCBI nr
Match: gi|449438054|ref|XP_004136805.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus])

HSP 1 Score: 458.8 bits (1179), Expect = 6.0e-126
Identity = 233/234 (99.57%), Postives = 234/234 (100.00%), Query Frame = 1


Query: 6   GSDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 65
           G+DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY
Sbjct: 65  GTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 124

Query: 66  DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV 125
           DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV
Sbjct: 125 DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV 184

Query: 126 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 185
           ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL
Sbjct: 185 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 244

Query: 186 DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 240
           DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL
Sbjct: 245 DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cucsa.148030.4 vs. NCBI nr
Match: gi|659110691|ref|XP_008455361.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo])

HSP 1 Score: 454.5 bits (1168), Expect = 1.1e-124
Identity = 230/234 (98.29%), Postives = 233/234 (99.57%), Query Frame = 1


Query: 6   GSDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 65
           G+DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY
Sbjct: 65  GTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVY 124

Query: 66  DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEV 125
           DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDA+K EEWARSQTAASLVEFASREGEV
Sbjct: 125 DQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASREGEV 184

Query: 126 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 185
           ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL
Sbjct: 185 ESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDL 244

Query: 186 DVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 240
           DVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEAITKCLGEYSMQTGL
Sbjct: 245 DVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cucsa.148030.4 vs. NCBI nr
Match: gi|729467914|ref|XP_010526529.1| (PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 402.5 bits (1033), Expect = 5.1e-109
Identity = 200/226 (88.50%), Postives = 217/226 (96.02%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           SDV TV+ETK NFL+AYKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGFVTVYD
Sbjct: 52  SDVPTVSETKSNFLQAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYD 111

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPSDEDR+AIF++YIKALNEDPEQYRIDA+K EEWARSQT+ASLVEF+SREGEVE
Sbjct: 112 QLMEGYPSDEDRDAIFKSYIKALNEDPEQYRIDAQKMEEWARSQTSASLVEFSSREGEVE 171

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           +ILKDIAERAGSK  FSYSRFFA+GLFRLLELANATEP+IL+KLCA+LNIDKK VDRDLD
Sbjct: 172 AILKDIAERAGSKEGFSYSRFFAVGLFRLLELANATEPNILDKLCASLNIDKKSVDRDLD 231

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 233
           VYRNLLSKLVQAKELLKEY+DREKKK++ERA SQ ANE ITKCLGE
Sbjct: 232 VYRNLLSKLVQAKELLKEYIDREKKKKEERAESQKANETITKCLGE 277

[Close]

BLAST of Cucsa.148030.4 vs. NCBI nr
Match: gi|1009128024|ref|XP_015881005.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 396.7 bits (1018), Expect = 2.8e-107
Identity = 195/223 (87.44%), Postives = 214/223 (95.96%), Query Frame = 1


Query: 11  TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLME 70
           TV+ETKLNFLKAYKRPIPSIYN+VL ELIVQQHL+RYKRTY YDPVFALGFVTVYDQLM+
Sbjct: 71  TVSETKLNFLKAYKRPIPSIYNSVLLELIVQQHLIRYKRTYSYDPVFALGFVTVYDQLMD 130

Query: 71  GYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVESILK 130
           GYPSDEDREAIFQAYIKALNEDPEQYRIDAKK EEWARSQTA+SLV+F+SREGEVE  LK
Sbjct: 131 GYPSDEDREAIFQAYIKALNEDPEQYRIDAKKMEEWARSQTASSLVDFSSREGEVEGTLK 190

Query: 131 DIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRN 190
           DIAERAG KG+FSYSRFFA+GLFRLLELANA+EP++LEKLCAALNI+KK VDRDLD+YRN
Sbjct: 191 DIAERAGGKGSFSYSRFFAVGLFRLLELANASEPTVLEKLCAALNINKKSVDRDLDIYRN 250

Query: 191 LLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 234
           LLSKLVQAK+LLKEYVDREKKKR+ERA SQ ANEA+T+CLG+Y
Sbjct: 251 LLSKLVQAKDLLKEYVDREKKKREERAESQKANEAVTQCLGDY 293

[Close]

BLAST of Cucsa.148030.4 vs. NCBI nr
Match: gi|590690275|ref|XP_007043465.1| (Photosystem II reaction center PSB29 protein [Theobroma cacao])

HSP 1 Score: 394.0 bits (1011), Expect = 1.8e-106
Identity = 195/226 (86.28%), Postives = 215/226 (95.13%), Query Frame = 1


Query: 7   SDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYD 66
           +DV TV+ETKLNFLKAYKRPIPS+YNTVLQELIVQQHLMRYK TYRYD VFALGFVTVYD
Sbjct: 67  TDVPTVSETKLNFLKAYKRPIPSVYNTVLQELIVQQHLMRYKWTYRYDAVFALGFVTVYD 126

Query: 67  QLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVE 126
           QLMEGYPSDEDR+AIFQAYIKAL EDP+QYRIDA+K EEWARSQT++SLVEF+SR+GEVE
Sbjct: 127 QLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARSQTSSSLVEFSSRDGEVE 186

Query: 127 SILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLD 186
           +ILKDIAERAG  G+FSYSRFFA+GLFRLLELANATEP++LEKLCAALNI+K+ VDRDLD
Sbjct: 187 AILKDIAERAGRMGSFSYSRFFAVGLFRLLELANATEPTVLEKLCAALNINKRSVDRDLD 246

Query: 187 VYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 233
           VYRNLLSKLVQAKELLKEYVDREKKKR+ER+ SQ ANEA+ KCLGE
Sbjct: 247 VYRNLLSKLVQAKELLKEYVDREKKKREERSESQKANEAVKKCLGE 292

The following BLAST results are available for this feature:

BLAST of Cucsa.148030.4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THF1_ARATH	1.1e-103	81.42	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=...	[more]
THF1_SOLTU	1.8e-98	77.09	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV...	[more]
THF1_ORYSJ	1.5e-97	80.28	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=T...	[more]
THF1_ACAM1	2.6e-36	36.82	Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1	[more]
THF1_TRIEI	1.1e-34	35.00	Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1	[more]

BLAST of Cucsa.148030.4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3P0_CUCSA	4.2e-126	99.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1	[more]
A0A061E4M4_THECC	1.3e-106	86.28	Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE...	[more]
A0A0D2V4U5_GOSRA	4.8e-106	85.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1	[more]
F6HHI1_VITVI	2.4e-105	85.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=...	[more]
A0A067EL53_CITSI	5.3e-105	85.09	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022333mg PE=3 SV=1	[more]

BLAST of Cucsa.148030.4 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20890.1	6.2e-105	81.42	photosystem II reaction center PSB29 protein	[more]

BLAST of Cucsa.148030.4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438054\|ref\|XP_004136805.1\|	6.0e-126	99.57	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus]	[more]
gi\|659110691\|ref\|XP_008455361.1\|	1.1e-124	98.29	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo]	[more]
gi\|729467914\|ref\|XP_010526529.1\|	5.1e-109	88.50	PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic [Tarenaya hassleriana]	[more]
gi\|1009128024\|ref\|XP_015881005.1\|	2.8e-107	87.44	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Ziziphus jujuba]	[more]
gi\|590690275\|ref\|XP_007043465.1\|	1.8e-106	86.28	Photosystem II reaction center PSB29 protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017499	Thf1

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006417	regulation of translation
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0015996	chlorophyll catabolic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009528	plastid inner membrane
cellular_component	GO:0009527	plastid outer membrane
cellular_component	GO:0010319	stromule
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.148030	Cucsa.148030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.148030.4	Cucsa.148030.4-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.148030.4.five_prime_UTR.1	Cucsa.148030.4.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.148030.4.CDS.1	Cucsa.148030.4.CDS.1	CDS
Cucsa.148030.4.CDS.2	Cucsa.148030.4.CDS.2	CDS
Cucsa.148030.4.CDS.3	Cucsa.148030.4.CDS.3	CDS
Cucsa.148030.4.CDS.4	Cucsa.148030.4.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.148030.4.three_prime_UTR.1	Cucsa.148030.4.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017499	Protein Thf1	HAMAP	MF_01843	Thf1	coord: 6..214 score: 22
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 11..216 score: 5.6
IPR017499	Protein Thf1	TIGRFAMs	TIGR03060	TIGR03060	coord: 9..213 score: 7.0
None	No IPR available	unknown	Coil	Coil	coord: 188..215 scor
None	No IPR available	PANTHER	PTHR34793	FAMILY NOT NAMED	coord: 8..238 score: 2.2E
None	No IPR available	PANTHER	PTHR34793:SF1	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 8..238 score: 2.2E