Cucsa.148030.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCCTTCTCTTCTTTCTTCCTTCTTTCTCTTTCTCTTTCTTTCTTTCTAAAAAATTTCTTCGAATTTCATTTTCTATTCCTTTTTtCTCCCTCTCTTCTTCGATATGAAATCCATTTTCTCCATAAATTCCTAAGCTTCGCAGATTTTTtCCTCATTCTTCTTCAATGGCGGCTGTTAATTCCATTTCATTCTCTACACTAAACCAATGTTCCGATAGGAGATTGCTGCTTCCCTCCTCTCGTTCGCACTCCTCCAATTTCCACGGCTTTCCTTTTCGTACTAGCGTTTTCACTCATTATTCCCGAGTACGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCCGCCGGAACAGGTAGCTTCTACCTCTGGTTATTTATTTTCCTTACTTGCTTAATTTGACTATTCCGATTAAGTTAGTGAATCTCTTGTTTTTTTTtTtTTTTTTTTttAGATTGAATGTTATAATGAGTATTAGAAGTTTTAAGTAACTATTAAGCTTCCAATAGTTCAGTTGGATCAGTTCTGTACTTGTGTAGTTTGTTGAGAGATTTCTCTAGTTCGTTTTCTTACTACTATAGGTTAGAAACTGATGCGCTATTTTGACGGCTCAGATGTGACCACTGTGGCCGAGACAAAATTGAACTTCCTTAAGGCCTATAAACGGCCTATCCCTAGTATTTACAACACGGTTCTGCAAGAATTGATTGTTCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCTCTTGGATTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGAAGCCATCTTCCAAGCGTATATTAAGGCTTTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCTCTAATCTCTATCAATTGTTGTCACTTGTCAGCTAGAAACTTCAGTTGCCTTATTGTTAAGTTTAAAAATCACCAACACGATTCCCTTTGGCTGTCTAAATGACTAAATTGGATTTGTATTGAATGTTAGTGCATGCTCGAAAAGTAGTATTAGAGACTTTTATTTGTACCTAGTAAACAAATTTACGAATGTTCATTTTTTATATTTCAAAAAGGGTTTTCTTTATTTTAAGTAATAACTTTTGTTATATCATCCAGAATTGATGCTAAAAAATTTGAAGAGTGGGCTCGATCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTATTTTGAAGGACATTGCAGAAAGAGCAGGGAGCAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTATTTCGTCTCCTTGAATTGGCAAATGCTACTGAGCCCAGTATCTTGGAAAAGGTTTCTTTAATATTCCTTTCTGTGATATAGCTTTTAAGTAGTTGAGATTTTGATGACATTCTTATCGAGTTGATTATAGCTAAATTAAATGACAGCCAGCCTCTCTTGTAGGACTTTTATCAATAGATGTTATCTCTGAGTGCTGCCATTAATAAAGTATAATAGTGTTTCTGGTTCATTAGTTTtCTTTTTACTCGTTAGAGAAATTGGATCTTGATGGAATATTGCCTAACATACTGTTCGAGACGAGAGAATTAGGTTCAAAGGCTTCTTTTGTGCATAAGGCTGCATTTTATTTTCTGGCTAACTAGTCTTTTGGAACATTTGTCTTTCCCCTTTCCTCCCTTGCCGCTGACCCATCACACACACACATACTATTGTCGGATTTCCTTTCACCCTTGTGAAGGCCGATTCTATTTACTGTGTCTATCACTGAAGATAAGATACTTTTGATCTCTTAAAACAGCTCAAGCTATGTAGTCGAACAGTTTATAAAACAGCAGAAGTCATATGATAGAGAATTAACCGGGTATTGAGATCTAATTTCTTGGTACTTCTGAACAGCTCTGTGCCGCTTTAAATATCGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGTAACCTGCTTTCAAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGACAGGTAAGAGACTGTTAAGTTCATGGTTCTAGGCATGGTAGATTAATATGCTCTTTAAAGCCCTCATATTTTCAGACTTTATGAAAATCTACAATCGAATTGAAAACTGTCTCAATCTTGTATTTGTGAAATCTCCTGCAAGTCACTATCATAGCATTTATATTCATTGGATCTTATCTGAGGTCTATATGAGGTAGACAATTGGGTGGATGATGGTGGTTGTAGGAGTAAGATTTAAAGGATAGAAGTTATATGATTAACCAGCGGGTTTTGAATTGTGTAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAAAAGGTAATTGGAGTCGCTACATAATTTGAGATAGACTTGAGAGAGTTTATAGCAACATTATTCTAAATACTTGTTAGATATGCATCTATAATGTATTATGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCACGGCTCTACCTTTATTTCTCATTTGATATAACCACCACTCAAGCTATTTTTTAATCATTTGTATTACATACTTTGAGTGCAACTGTCAATACAAAATGCTTTCGCACTCTGTGCAGTAATCACTCCTCCAGGGATATTTGACCATCTGCCTTTTGTATTGTTATCCTTTCTGTATTATTCTGATATTTGGCTATTTGCTTTTGTATGATCTAAATTGTTTCAATTATAAACGTTTTACGATTTTAATTGATATAGTTAATAGTTTGGAGTTTTAACCCTAATTTAGAACCATCCTTTTGAAAATATGACCTTACTGGAACAGATCTGTTTTACAGGTGTGCTATTTCAATTGTGTAGACTTGTGAAGCTCAATACTAAAATTTATACTCTCCCGAAAAATTTTATGTTCTAATTCAGTTACCTAGTATACGTT ACCCTTCTCttctttcttccttctttctctttctctttctttctttctAAAAAATTTCTTCGAATTTCATTTTCTATTCCTTTTTTCTCCCTCTCTTCTTCGATATGAAATCCATTTTCTCCATAAATTCCTAAGCTTCGCAGATTTTTTCCTCATTCTTCTTCAATGGCGGCTGTTAATTCCATTTCATTCTCTACACTAAACCAATGTTCCGATAGGAGATTGCTGCTTCCCTCCTCTCGTTCGCACTCCTCCAATTTCCACGGCTTTCCTTTTCGTACTAGCGTTTTCACTCATTATTCCCGAGTACGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACCACTGTGGCCGAGACAAAATTGAACTTCCTTAAGGCCTATAAACGGCCTATCCCTAGTATTTACAACACGGTTCTGCAAGAATTGATTGTTCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCTCTTGGATTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGAAGCCATCTTCCAAGCGTATATTAAGGCTTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTTGAAGAGTGGGCTCGATCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTATTTTGAAGGACATTGCAGAAAGAGCAGGGAGCAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTATTTCGTCTCCTTGAATTGGCAAATGCTACTGAGCCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATATCGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGTAACCTGCTTTCAAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGACAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAAAAGGTGTGCTATTTCAATTGTGTAGACTTGTGAAGCTCAATACTAAAATTTATACTCTCCCGAAAAATTTTATGTTCTAATTCAGTTACCTAGTATACGTT ATGGCGGCTGTTAATTCCATTTCATTCTCTACACTAAACCAATGTTCCGATAGGAGATTGCTGCTTCCCTCCTCTCGTTCGCACTCCTCCAATTTCCACGGCTTTCCTTTTCGTACTAGCGTTTTCACTCATTATTCCCGAGTACGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACCACTGTGGCCGAGACAAAATTGAACTTCCTTAAGGCCTATAAACGGCCTATCCCTAGTATTTACAACACGGTTCTGCAAGAATTGATTGTTCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCTCTTGGATTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGAAGCCATCTTCCAAGCGTATATTAAGGCTTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTTGAAGAGTGGGCTCGATCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTATTTTGAAGGACATTGCAGAAAGAGCAGGGAGCAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTATTTCGTCTCCTTGAATTGGCAAATGCTACTGAGCCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATATCGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGTAACCTGCTTTCAAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATATGTCGACAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAA MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIHCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL*
BLAST of Cucsa.148030.1 vs. Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 2.9e-109 Identity = 201/293 (68.60%), Postives = 243/293 (82.94%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1) HSP 1 Score: 395.6 bits (1015), Expect = 4.9e-109 Identity = 207/291 (71.13%), Postives = 247/291 (84.88%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1) HSP 1 Score: 370.2 bits (949), Expect = 2.2e-101 Identity = 195/288 (67.71%), Postives = 236/288 (81.94%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. Swiss-Prot
Match: THF1_ACAM1 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 4.2e-36 Identity = 81/219 (36.99%), Postives = 135/219 (61.64%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. Swiss-Prot
Match: THF1_TRIEI (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.8e-34 Identity = 77/216 (35.65%), Postives = 128/216 (59.26%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. TrEMBL
Match: A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1) HSP 1 Score: 586.6 bits (1511), Expect = 1.7e-164 Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. TrEMBL
Match: A0A061E4M4_THECC (Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE=3 SV=1) HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-123 Identity = 229/292 (78.42%), Postives = 258/292 (88.36%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. TrEMBL
Match: V4U436_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016098mg PE=3 SV=1) HSP 1 Score: 448.7 bits (1153), Expect = 5.4e-123 Identity = 228/294 (77.55%), Postives = 256/294 (87.07%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. TrEMBL
Match: A0A067EX58_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022333mg PE=3 SV=1) HSP 1 Score: 448.4 bits (1152), Expect = 7.0e-123 Identity = 227/294 (77.21%), Postives = 257/294 (87.41%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. TrEMBL
Match: A0A0D2V4U5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 9.2e-123 Identity = 227/293 (77.47%), Postives = 258/293 (88.05%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. TAIR10
Match: AT2G20890.1 (AT2G20890.1 photosystem II reaction center PSB29 protein) HSP 1 Score: 395.6 bits (1015), Expect = 2.7e-110 Identity = 207/291 (71.13%), Postives = 247/291 (84.88%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. NCBI nr
Match: gi|449438054|ref|XP_004136805.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus]) HSP 1 Score: 586.6 bits (1511), Expect = 2.4e-164 Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. NCBI nr
Match: gi|659110691|ref|XP_008455361.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo]) HSP 1 Score: 562.8 bits (1449), Expect = 3.7e-157 Identity = 287/298 (96.31%), Postives = 291/298 (97.65%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. NCBI nr
Match: gi|1009128024|ref|XP_015881005.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 459.5 bits (1181), Expect = 4.4e-126 Identity = 233/293 (79.52%), Postives = 261/293 (89.08%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. NCBI nr
Match: gi|694324363|ref|XP_009353207.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneideri]) HSP 1 Score: 458.8 bits (1179), Expect = 7.5e-126 Identity = 226/295 (76.61%), Postives = 262/295 (88.81%), Query Frame = 1
BLAST of Cucsa.148030.1 vs. NCBI nr
Match: gi|658025445|ref|XP_008348123.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica]) HSP 1 Score: 457.6 bits (1176), Expect = 1.7e-125 Identity = 226/295 (76.61%), Postives = 260/295 (88.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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