Cucsa.147970.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.147970.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Wound-responsive family protein, putative
Location	scaffold01107 : 265245 .. 266274 (-)
Sequence length	1030

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGGGTTTCTATGTTTTTTCAATCAACGCAATAACGGTGAACGAGTTGTGTGAGTGAGCGAGTGAGTTAACTCAGTTTATCTTAAAAAGAACTTTGTGTTAAGTGTTTGAGGTTGAAGATGAGTTACCTGAACAGAGTTGGAATGGCGGCCAGTGTGGCTGTGGCTCAAGGCCATACCGAGATCGGACACAAGTGGAAGTCTGGACTTAAATCTCTTCGACAAGGTCGGAGACTTTTGTCCTCCGGCGATAATTCGGCGGATCTCCGTCCACTGTCCAGTTTGGTTGGATCGGAAGGCTCTGGAAGTGTGCGGAGCTGTGACGTTGACGAGAGGATAGCACAATCGGAGGATTCTCTCCGGAGAGTTATGTACTTGAACTGTTGGGGCCAAGGGTGATTGGCTTCTAGGTCACTTTTGGTGACATGTAGAGAGATCTGGTCGGCGATCGTTGATCGACGATCAGATTTGGAGCTACTCGAGCGAGATGGAATTCGAGGTATTTGATATGGGATTGACGCGATGAAGATTGAGTGATGATTGATCAATAACCTTGAAAATTATTTGGAAAAATCGCTATGTAGCTTTGGGATAATTGTACAGAAGAAAAAGGGAAATGAATCGGTTTCTTTGAAATATAATAAATCTCGATTCTGTTTTTCTTTGCTTAATTTGAAGTTTATGTGCAACTAAGTGAGGTTAAATTCAACTGAACTGAATCCAGAACCCAGATCTGTTTAACTGACTACCTTTTGATGAATCAAATCGAAAATTTGTTTGGATCTGAACTAATTTTAGGGTTTAGAAGCTCTTCATATTTAAAAGATTTTTCACCGAGATCTGCTGGAGAAGATGGTAACCAAGATGGCAACAAGCCAACTTTTTGAGATTCAATTTCTTTTATTTTCTTTAAGTCAAGTTGTCTGGGGGATGGAAATTTCATTTGAATCTTCAGATAATTTATAATTTTGTTATGTGAATTAGCTTCATACTTTGCTTCCAAGGATTTCCTATGCAAAATTATTCTTTT

mRNA sequence

TGGGGGGTTTCTATGTTTTTTCAATCAACGCAATAACGGTGAACGAGTTGTGTGAGTGAGCGAGTGAGTTAACTCAGTTTATCTTAAAAAGAACTTTGTGTTAAGTGTTTGAGGTTGAAGATGAGTTACCTGAACAGAGTTGGAATGGCGGCCAGTGTGGCTGTGGCTCAAGGCCATACCGAGATCGGACACAAGTGGAAGTCTGGACTTAAATCTCTTCGACAAGGTCGGAGACTTTTGTCCTCCGGCGATAATTCGGCGGATCTCCGTCCACTGTCCAGTTTGGTTGGATCGGAAGGCTCTGGAAGTGTGCGGAGCTGTGACGTTGACGAGAGGATAGCACAATCGGAGGATTCTCTCCGGAGAGTTATGTACTTGAACTGTTGGGGCCAAGGGTGATTGGCTTCTAGGTCACTTTTGGTGACATGTAGAGAGATCTGGTCGGCGATCGTTGATCGACGATCAGATTTGGAGCTACTCGAGCGAGATGGAATTCGAGGTATTTGATATGGGATTGACGCGATGAAGATTGAGTGATGATTGATCAATAACCTTGAAAATTATTTGGAAAAATCGCTATGTAGCTTTGGGATAATTGTACAGAAGAAAAAGGGAAATGAATCGGTTTCTTTGAAATATAATAAATCTCGATTCTGTTTTTCTTTGCTTAATTTGAAGTTTATGTGCAACTAAGTGAGGTTAAATTCAACTGAACTGAATCCAGAACCCAGATCTGTTTAACTGACTACCTTTTGATGAATCAAATCGAAAATTTGTTTGGATCTGAACTAATTTTAGGGTTTAGAAGCTCTTCATATTTAAAAGATTTTTCACCGAGATCTGCTGGAGAAGATGGTAACCAAGATGGCAACAAGCCAACTTTTTGAGATTCAATTTCTTTTATTTTCTTTAAGTCAAGTTGTCTGGGGGATGGAAATTTCATTTGAATCTTCAGATAATTTATAATTTTGTTATGTGAATTAGCTTCATACTTTGCTTCCAAGGATTTCCTATGCAAAATTATTCTTTT

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCCAGTGTGGCTGTGGCTCAAGGCCATACCGAGATCGGACACAAGTGGAAGTCTGGACTTAAATCTCTTCGACAAGGTCGGAGACTTTTGTCCTCCGGCGATAATTCGGCGGATCTCCGTCCACTGTCCAGTTTGGTTGGATCGGAAGGCTCTGGAAGTGTGCGGAGCTGTGACGTTGACGAGAGGATAGCACAATCGGAGGATTCTCTCCGGAGAGTTATGTACTTGAACTGTTGGGGCCAAGGGTGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEGSGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG*

Homology

[Close]

BLAST of Cucsa.147970.1 vs. TrEMBL
Match: A0A0A0K6Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.9e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSG+NSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Cucsa.147970.1 vs. TrEMBL
Match: A0A151RLL3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_022629 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-23
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGPLSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +G+V  S DVD R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVDNRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. TrEMBL
Match: A0A0B2P9R7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037964 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-23
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT  GHK K+ L S+   R  L SG + +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTHPGHKCKTALTSIHHNRSRLFSGGSLSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +GSV  S DV+ R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGSVAGSSDVENRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. TrEMBL
Match: I1LUD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G201000 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGALSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +GSV  S DV+ R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGSVAGSSDVENRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. TrEMBL
Match: A0A0S3SHH3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G093200 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-22
Identity = 56/93 (60.22%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +G+V  S DV +R+ Q+++SLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVQKRVTQADESLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. TAIR10
Match: AT4G28240.1 (AT4G28240.1 Wound-responsive family protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-12
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + +R LSS     DLRPL++   ++ 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAA---ADL 60

Query: 61 SGSVRSCDVDERIAQS--EDSLRRVMYLNCWGQG 93
          +G     +   R + S  ++SLR+VMYLNCW QG
Sbjct: 61 TGDSLPSEERRRTSSSTPDESLRQVMYLNCWAQG 86

[Close]

BLAST of Cucsa.147970.1 vs. NCBI nr
Match: gi|659110677|ref|XP_008455353.1| (PREDICTED: uncharacterized protein LOC103495540 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSG+NSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Cucsa.147970.1 vs. NCBI nr
Match: gi|1012332018|gb|KYP43466.1| (hypothetical protein KK1_035112 [Cajanus cajan])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGPLSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +G+V  S DVD R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVDNRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. NCBI nr
Match: gi|734321859|gb|KHN04284.1| (hypothetical protein glysoja_037964 [Glycine soja])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT  GHK K+ L S+   R  L SG + +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTHPGHKCKTALTSIHHNRSRLFSGGSLSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +GSV  S DV+ R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGSVAGSSDVENRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. NCBI nr
Match: gi|356543792|ref|XP_003540344.1| (PREDICTED: uncharacterized protein LOC100817529 [Glycine max])

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-22
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGALSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +GSV  S DV+ R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGSVAGSSDVENRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Cucsa.147970.1 vs. NCBI nr
Match: gi|965605071|dbj|BAT92247.1| (hypothetical protein VIGAN_07093200 [Vigna angularis var. angularis])

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-22
Identity = 56/93 (60.22%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGDNSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +G+V  S DV +R+ Q+++SLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVQKRVTQADESLRKVMYLSCWGQG 93

The following BLAST results are available for this feature:

BLAST of Cucsa.147970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Z3_CUCSA	5.9e-44	98.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046690 PE=4 SV=1	[more]
A0A151RLL3_CAJCA	9.8e-23	62.37	Uncharacterized protein OS=Cajanus cajan GN=KK1_022629 PE=4 SV=1	[more]
A0A0B2P9R7_GLYSO	9.8e-23	62.37	Uncharacterized protein OS=Glycine soja GN=glysoja_037964 PE=4 SV=1	[more]
I1LUD2_SOYBN	1.3e-22	62.37	Uncharacterized protein OS=Glycine max GN=GLYMA_12G201000 PE=4 SV=1	[more]
A0A0S3SHH3_PHAAN	2.8e-22	60.22	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G093200 PE=...	[more]

BLAST of Cucsa.147970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28240.1	4.1e-12	45.74	Wound-responsive family protein	[more]

BLAST of Cucsa.147970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110677\|ref\|XP_008455353.1\|	8.5e-44	98.91	PREDICTED: uncharacterized protein LOC103495540 [Cucumis melo]	[more]
gi\|1012332018\|gb\|KYP43466.1\|	1.4e-22	62.37	hypothetical protein KK1_035112 [Cajanus cajan]	[more]
gi\|734321859\|gb\|KHN04284.1\|	1.4e-22	62.37	hypothetical protein glysoja_037964 [Glycine soja]	[more]
gi\|356543792\|ref\|XP_003540344.1\|	1.8e-22	62.37	PREDICTED: uncharacterized protein LOC100817529 [Glycine max]	[more]
gi\|965605071\|dbj\|BAT92247.1\|	4.1e-22	60.22	hypothetical protein VIGAN_07093200 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.147970	Cucsa.147970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.147970.1	Cucsa.147970.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.147970.1.five_prime_UTR.1	Cucsa.147970.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.147970.1.CDS.1	Cucsa.147970.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.147970.1.three_prime_UTR.1	Cucsa.147970.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..91 score: 9.4
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..92 score: 9.9
None	No IPR available	PANTHER	PTHR33090:SF1	SUBFAMILY NOT NAMED	coord: 1..92 score: 9.9