Cucsa.142720.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.142720.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein
Location	scaffold01079 : 927392 .. 928093 (-)
Sequence length	702

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCCTCTCCACCTCCCGGCACCTACGTCATCCAGCTCCCCAAGGACCAAATCTACCGCCTTCCTCCTCCCGAAAACGCCCACCGCTTCAAACTCTACACTCGCCAAAGCCACCGCCGCCGCAACCGCTGCCGCTCCTGCCTCTTCTGCCTCCTCGCCATCCTCGCCATCCTCATCATCCTTCTAGGCATCACCCTCGCCGTTTTCTACTTTGTCGTTCGCCCTAAATCACCCAACTACTCCATCGACGCCATTTCCATTTCCGGACTGAATAACCTAACATCCTCCGCGATCTCGCCTGTGTTCAATCTGAGTGTTCGAGCGGATAATCCGAATAAGAAGATCGGAATCTATTACTTAACAGGTAGCTCAGTCCGAATCTATTCCTCTAACGAGAAACTGTCGGAGGGTGTTTTGCCTGATTTCTTCCAGCCTTCGAAGAATGTGAGTGTGCTTAGAGCTGTTGTGAGAGGAGCCGGAGTTAATTTGTCGAGTGGGGCGAAGAATGAGATAATTGAATGGGTGAAACAGAGGGCGGTGTTGTTGAAGGTTGAGATTGGAGTTCCGATTAAGGTGAAAATTGGATCGGTGAAGAGTTGGAAGATAAAAGTGAAGGTGAATTGTGATGTGACGGTGGATGAGTTGACGGCAGCGGCGAAGATTGTGAAGAAGAATTGCGATTATAGTGTGAAGATTTGGTAG

mRNA sequence

CCCTCCTCTCCACCTCCCGGCACCTACGTCATCCAGCTCCCCAAGGACCAAATCTACCGCCTTCCTCCTCCCGAAAACGCCCACCGCTTCAAACTCTACACTCGCCAAAGCCACCGCCGCCGCAACCGCTGCCGCTCCTGCCTCTTCTGCCTCCTCGCCATCCTCGCCATCCTCATCATCCTTCTAGGCATCACCCTCGCCGTTTTCTACTTTGTCGTTCGCCCTAAATCACCCAACTACTCCATCGACGCCATTTCCATTTCCGGACTGAATAACCTAACATCCTCCGCGATCTCGCCTGTGTTCAATCTGAGTGTTCGAGCGGATAATCCGAATAAGAAGATCGGAATCTATTACTTAACAGGTAGCTCAGTCCGAATCTATTCCTCTAACGAGAAACTGTCGGAGGGTGTTTTGCCTGATTTCTTCCAGCCTTCGAAGAATGTGAGTGTGCTTAGAGCTGTTGTGAGAGGAGCCGGAGTTAATTTGTCGAGTGGGGCGAAGAATGAGATAATTGAATGGGTGAAACAGAGGGCGGTGTTGTTGAAGGTTGAGATTGGAGTTCCGATTAAGGTGAAAATTGGATCGGTGAAGAGTTGGAAGATAAAAGTGAAGGTGAATTGTGATGTGACGGTGGATGAGTTGACGGCAGCGGCGAAGATTGTGAAGAAGAATTGCGATTATAGTGTGAAGATTTGGTAG

Coding sequence (CDS)

CCCTCCTCTCCACCTCCCGGCACCTACGTCATCCAGCTCCCCAAGGACCAAATCTACCGCCTTCCTCCTCCCGAAAACGCCCACCGCTTCAAACTCTACACTCGCCAAAGCCACCGCCGCCGCAACCGCTGCCGCTCCTGCCTCTTCTGCCTCCTCGCCATCCTCGCCATCCTCATCATCCTTCTAGGCATCACCCTCGCCGTTTTCTACTTTGTCGTTCGCCCTAAATCACCCAACTACTCCATCGACGCCATTTCCATTTCCGGACTGAATAACCTAACATCCTCCGCGATCTCGCCTGTGTTCAATCTGAGTGTTCGAGCGGATAATCCGAATAAGAAGATCGGAATCTATTACTTAACAGGTAGCTCAGTCCGAATCTATTCCTCTAACGAGAAACTGTCGGAGGGTGTTTTGCCTGATTTCTTCCAGCCTTCGAAGAATGTGAGTGTGCTTAGAGCTGTTGTGAGAGGAGCCGGAGTTAATTTGTCGAGTGGGGCGAAGAATGAGATAATTGAATGGGTGAAACAGAGGGCGGTGTTGTTGAAGGTTGAGATTGGAGTTCCGATTAAGGTGAAAATTGGATCGGTGAAGAGTTGGAAGATAAAAGTGAAGGTGAATTGTGATGTGACGGTGGATGAGTTGACGGCAGCGGCGAAGATTGTGAAGAAGAATTGCGATTATAGTGTGAAGATTTGGTAG

Protein sequence

PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW*

Homology

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BLAST of Cucsa.142720.1 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-14
Identity = 56/217 (25.81%), Postives = 105/217 (48.39%), Query Frame = 1


Query: 21  LPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLA-ILAILIILLGITLAVFYFVVRPKSPN 80
           +PPP      K Y R+ H R   C  CL  L   ++  LI++LG+   +F+ +VRP++  
Sbjct: 16  VPPPAP----KGYYRRGHGRG--CGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIK 75

Query: 81  YSIDAISISGLNNLTSSAISPV-FNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGV 140
           + +   S++  ++ +   I      L+V   NPNK+IG+YY        Y   ++ S   
Sbjct: 76  FHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYY-DRIEAHAYYEGKRFSTIT 135

Query: 141 LPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVL-LKVEIGVPIKVKIGSV 200
           L  F+Q  KN +VL    +G  + + +  ++  +   +   V  ++++  + ++ K+G +
Sbjct: 136 LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDL 195

Query: 201 KSWKIKVKVNCD------VTVDELTAAAKIVKKNCDY 229
           K  +IK KV+CD       T +  T  + +    CD+
Sbjct: 196 KFRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDF 225

[Close]

BLAST of Cucsa.142720.1 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-12
Identity = 59/213 (27.70%), Postives = 96/213 (45.07%), Query Frame = 1


Query: 21  LPPPENAHRFKLYTRQSHRRRNRCRSCL--------FCLLA----ILAILIILLGITLAV 80
           +PPP+           SH RR     CL         C+L+    IL  + +LLGI   +
Sbjct: 13  IPPPKKVSH-------SHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAALI 72

Query: 81  FYFVVRPKSPNYSI-DAISISGLNNLTSSAISPVFNLSVRAD------NPNKKIGIYYLT 140
            + + RP +  + + DA        LT   + P  NL    D      NPN++IG+YY  
Sbjct: 73  IWLIFRPNAIKFHVTDA-------KLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYY-D 132

Query: 141 GSSVRIYSSNEKLS-EGVLPDFFQPSKNVSVLRAVVRGAG-VNLSSGAKNEIIEWVKQRA 200
              VR Y  +++      +  F+Q  KN +V+   + G   V L  G + ++ E V  + 
Sbjct: 133 EIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQI 192

Query: 201 VLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTV 213
             +  ++ + I+ K G +KSW+ K K+ CD+ V
Sbjct: 193 YRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKV 210

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BLAST of Cucsa.142720.1 vs. TrEMBL
Match: A0A0A0LX01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G601000 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 2.8e-127
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


Query: 1   PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 60
           PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII
Sbjct: 26  PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 85

Query: 61  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL 120
           LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL
Sbjct: 86  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL 145

Query: 121 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 180
           TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV
Sbjct: 146 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 205

Query: 181 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
           LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW
Sbjct: 206 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 258

[Close]

BLAST of Cucsa.142720.1 vs. TrEMBL
Match: A0A0S3RK74_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G055600 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.0e-65
Identity = 125/233 (53.65%), Postives = 167/233 (71.67%), Query Frame = 1


Query: 4   PPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILLG 63
           P PGTYVI++PKDQ+YR+PP ENA R+  YT + HRR +RC SC   L+ IL+ILI+LLG
Sbjct: 42  PSPGTYVIKIPKDQVYRVPPAENARRYDQYTHRKHRR-SRCCSCCCWLIGILSILIVLLG 101

Query: 64  ITLAVFYFVVRPKSPNYSIDAISISGLNNLTSS---AISPVFNLSVRADNPNKKIGIYYL 123
           I   +FY V RPK+P Y+I+ I+I G+N  + S   AISP FN++V+ADNPN KIGIYYL
Sbjct: 102 IAAGIFYLVFRPKAPKYTIEDIAIRGINVTSPSSDVAISPEFNVTVKADNPNDKIGIYYL 161

Query: 124 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 183
             SS  ++ ++ +L  G LP F QPS NV+V   V++G G+ L S  +  ++E   +R V
Sbjct: 162 KDSSAEVFYNDARLCNGALPAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKV 221

Query: 184 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
            L V I  P+K+K+GSVK+WKI VK++CDVTV++LTA AKIV K CDY V +W
Sbjct: 222 PLTVRIRAPVKIKVGSVKTWKITVKLDCDVTVNDLTAQAKIVSKRCDYEVDLW 273

[Close]

BLAST of Cucsa.142720.1 vs. TrEMBL
Match: A0A0L9UVC0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g041700 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.0e-65
Identity = 125/233 (53.65%), Postives = 167/233 (71.67%), Query Frame = 1


Query: 4   PPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILLG 63
           P PGTYVI++PKDQ+YR+PP ENA R+  YT + HRR +RC SC   L+ IL+ILI+LLG
Sbjct: 42  PSPGTYVIKIPKDQVYRVPPAENARRYDQYTHRKHRR-SRCCSCCCWLIGILSILIVLLG 101

Query: 64  ITLAVFYFVVRPKSPNYSIDAISISGLNNLTSS---AISPVFNLSVRADNPNKKIGIYYL 123
           I   +FY V RPK+P Y+I+ I+I G+N  + S   AISP FN++V+ADNPN KIGIYYL
Sbjct: 102 IAAGIFYLVFRPKAPKYTIEDIAIRGINVTSPSSDVAISPEFNVTVKADNPNDKIGIYYL 161

Query: 124 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 183
             SS  ++ ++ +L  G LP F QPS NV+V   V++G G+ L S  +  ++E   +R V
Sbjct: 162 KDSSAEVFYNDARLCNGALPAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKV 221

Query: 184 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
            L V I  P+K+K+GSVK+WKI VK++CDVTV++LTA AKIV K CDY V +W
Sbjct: 222 PLTVRIRAPVKIKVGSVKTWKITVKLDCDVTVNDLTAQAKIVSKRCDYEVDLW 273

[Close]

BLAST of Cucsa.142720.1 vs. TrEMBL
Match: A0A151U1M3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_005798 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-64
Identity = 121/236 (51.27%), Postives = 171/236 (72.46%), Query Frame = 1


Query: 1   PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 60
           PS  PP +YVI +PKDQIYR+PPPENA R+  YTR+ HR  NRC  CL  L+ ++ +L++
Sbjct: 35  PSQNPPVSYVIHIPKDQIYRVPPPENARRYDQYTRRKHRP-NRCCRCLCWLIGLIVVLVV 94

Query: 61  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSA---ISPVFNLSVRADNPNKKIGI 120
           LLGI   + Y V RP++PNY I++I++ G+N  ++SA   ISPVFN++V+ADNPN KIGI
Sbjct: 95  LLGIAAGILYLVFRPEAPNYGIESIAVRGINLTSASAAAAISPVFNVTVKADNPNDKIGI 154

Query: 121 YYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQ 180
           +YL  S   ++ ++ +LS G LP F+QPS NV+V R V++G G+ L S  +  ++  V +
Sbjct: 155 HYLKDSHAEVFYADVELSNGALPAFYQPSNNVTVFRTVLKGNGIVLRSEDRRALVNAVTK 214

Query: 181 RAVLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
           + V L V I  P+K+K+GSVK+WKI V+V+CDVTV+ LTA AKIV K+C+Y V +W
Sbjct: 215 QKVPLTVRIRAPVKIKVGSVKTWKITVRVDCDVTVNALTANAKIVSKHCNYGVDLW 269

[Close]

BLAST of Cucsa.142720.1 vs. TrEMBL
Match: B9HQ55_POPTR (Harpin-induced family protein OS=Populus trichocarpa GN=POPTR_0009s16050g PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.4e-64
Identity = 119/233 (51.07%), Postives = 165/233 (70.82%), Query Frame = 1


Query: 1   PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 60
           P  PPPGTYVIQ+PKDQ+YR+PPPENA RF+  +R+  RR + C  CL   L+ LA  + 
Sbjct: 50  PVQPPPGTYVIQIPKDQVYRVPPPENAQRFERLSRRKPRR-SHCCCCLCWFLSFLAAFLF 109

Query: 61  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL 120
           L+G+  A+ Y V RP+SP+YSI+ +SISGLN  +S  ISP FN++VRA+NPN KIGIYY 
Sbjct: 110 LVGLAAAILYLVFRPESPDYSIERVSISGLNLTSSGPISPEFNVTVRANNPNNKIGIYYE 169

Query: 121 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 180
            GSSV +Y+   K++ G LP F+Q   NV+V    ++G+ + L+SG +  ++  V +  V
Sbjct: 170 KGSSVNVYNDGVKMAAGSLPVFYQDKNNVTVFVTSLKGSAIELTSGVRTALVNGVSKGTV 229

Query: 181 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
              + +  P+K K+GSVK+WKI VKV+CD+TVD+LTA+AKI  K+CDY V +W
Sbjct: 230 PFNLALRAPVKFKVGSVKTWKITVKVDCDLTVDKLTASAKIGSKSCDYGVDLW 281

[Close]

BLAST of Cucsa.142720.1 vs. TAIR10
Match: AT2G27080.1 (AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 244.2 bits (622), Expect = 8.0e-65
Identity = 115/231 (49.78%), Postives = 167/231 (72.29%), Query Frame = 1


Query: 3   SPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILL 62
           +PPP TYVIQ+PKDQIYR+PPPENAHRF+  +R+   R N CR C    LA + ILI+L 
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPPENAHRFEQLSRKKTNRSN-CRCCFCSFLAAVFILIVLA 90

Query: 63  GITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYLTG 122
           GI+ AV Y + RP++P YSI+  S+SG+N  ++S ISP FN++VR+ N N KIG+YY   
Sbjct: 91  GISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEKE 150

Query: 123 SSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVLL 182
           SSV +Y ++  +S GV+P F+QP+KNV+V++ V+ G+ + L+SG + E+   V ++ V  
Sbjct: 151 SSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPF 210

Query: 183 KVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
           K++I  P+K+K GSVK+W + V V+CDVTVD+LTA ++IV + C + V +W
Sbjct: 211 KLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIVSRKCSHDVDLW 260

[Close]

BLAST of Cucsa.142720.1 vs. TAIR10
Match: AT5G21130.1 (AT5G21130.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-50
Identity = 92/229 (40.17%), Postives = 145/229 (63.32%), Query Frame = 1


Query: 4   PPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILLG 63
           PPPGTYVI+LPKDQIYR+PPPENAHR++  +R+    ++ CR CL   L+ L I+I+L  
Sbjct: 53  PPPGTYVIKLPKDQIYRVPPPENAHRYEYLSRRK-TNKSCCRRCLCYSLSALLIIIVLAA 112

Query: 64  ITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYLTGS 123
           I    FY V +P  P +S+  +S++G+N  +SS  SPV  + +R+ N   K+G+ Y  G+
Sbjct: 113 IAFGFFYLVYQPHKPQFSVSGVSVTGINLTSSSPFSPVIRIKLRSQNVKGKLGLIYEKGN 172

Query: 124 SVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVLLK 183
              ++ +  KL  G    F QP+ NV+V+  V++G+ V L S ++ E+ E  K+  V   
Sbjct: 173 EADVFFNGTKLGNGEFTAFKQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFG 232

Query: 184 VEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKI 233
           + I  P+K K+GSV +W + + V+C +TVD+LTA+A +  +NC+  + +
Sbjct: 233 LRIKAPVKFKVGSVTTWTMTITVDCKITVDKLTASATVKTENCETGLSL 280

[Close]

BLAST of Cucsa.142720.1 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-27
Identity = 60/197 (30.46%), Postives = 111/197 (56.35%), Query Frame = 1


Query: 39  RRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAI 98
           +RR+ C  C       L +L++ +G ++ + Y V +PK P+YSID + ++       S++
Sbjct: 57  KRRSCCCRCFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSL 116

Query: 99  SPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRG 158
           +  FN+++ A NPN+KIGIYY  GS + ++    +LS G LP F+Q  +N +V+   + G
Sbjct: 117 TTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTG 176

Query: 159 AGVNLSSGAKNEIIEWVKQRA-VLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTA 218
              N +SG +  + E  ++   + L++ +  P++VK G +K ++++  V C V VD L  
Sbjct: 177 QTQN-ASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLAT 236

Query: 219 --AAKIVKKNCDYSVKI 233
               KI   +C + +++
Sbjct: 237 NNVIKIQSSSCKFRLRL 252

[Close]

BLAST of Cucsa.142720.1 vs. TAIR10
Match: AT5G36970.1 (AT5G36970.1 NDR1/HIN1-like 25)

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-26
Identity = 58/191 (30.37%), Postives = 106/191 (55.50%), Query Frame = 1


Query: 44  CRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFN 103
           CR C+   L +L +LI+++G  + + Y V RPK P+Y+ID + ++        ++S  FN
Sbjct: 59  CR-CVCYTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQDLSLSTAFN 118

Query: 104 LSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNL 163
           +++ A NPN+KIGIYY  GS + +     ++S G LP F+Q  +N +++   + G   N 
Sbjct: 119 VTITAKNPNEKIGIYYEDGSKISVLYMQTRISNGSLPKFYQGHENTTIILVEMTGFTQNA 178

Query: 164 SSGAKNEIIEWVKQRAVLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTA--AAKI 223
           +S       +     ++ L++ +  P+++K+G +K  K++  V C V+VD L A    ++
Sbjct: 179 TSLMTTLQEQQRLTGSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCGVSVDSLAANSVIRV 238

Query: 224 VKKNCDYSVKI 233
              NC Y  ++
Sbjct: 239 RSSNCKYRFRL 248

[Close]

BLAST of Cucsa.142720.1 vs. TAIR10
Match: AT1G54540.1 (AT1G54540.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-25
Identity = 71/234 (30.34%), Postives = 121/234 (51.71%), Query Frame = 1


Query: 2   SSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIIL 61
           ++P PG  V+ LP  +   +PPP    +           RN C      +L++L I +I 
Sbjct: 21  TTPAPGKTVL-LPVQR--PIPPPVIPSK----------NRNMCCKIFCWVLSLLVIALIA 80

Query: 62  LGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYLT 121
           L I +AV YFV  PK P+Y ++++ ++ L      ++S  F + + A NPN+KIGIYY  
Sbjct: 81  LAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARNPNEKIGIYYEK 140

Query: 122 GSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQR--- 181
           G  + ++    KL EG +P F+Q  +NV+ L   + G      +   N ++  ++Q+   
Sbjct: 141 GGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTG-----RAQYGNTVLAALQQQQQT 200

Query: 182 -AVLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVK 232
             V L +++  P+ +K+G++K  KI++  +C + VD L+    I  K  D S K
Sbjct: 201 GRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIKASDCSFK 236

[Close]

BLAST of Cucsa.142720.1 vs. NCBI nr
Match: gi|449452811|ref|XP_004144152.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 462.6 bits (1189), Expect = 4.1e-127
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


Query: 1   PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 60
           PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII
Sbjct: 26  PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 85

Query: 61  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL 120
           LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL
Sbjct: 86  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSAISPVFNLSVRADNPNKKIGIYYL 145

Query: 121 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 180
           TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV
Sbjct: 146 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 205

Query: 181 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
           LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW
Sbjct: 206 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 258

[Close]

BLAST of Cucsa.142720.1 vs. NCBI nr
Match: gi|659100419|ref|XP_008451090.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 410.2 bits (1053), Expect = 2.4e-111
Identity = 205/236 (86.86%), Postives = 221/236 (93.64%), Query Frame = 1


Query: 1   PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 60
           P SPPPGTYVIQLPKDQIYR+PPPENAHRF+LYTRQ+ RRRN CRSCLFCLLAIL +LII
Sbjct: 26  PPSPPPGTYVIQLPKDQIYRVPPPENAHRFQLYTRQNRRRRNPCRSCLFCLLAILILLII 85

Query: 61  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSS---AISPVFNLSVRADNPNKKIGI 120
           LLGIT+AVFY VVRPKSPNYSIDAIS+SGLN LTSS   AISP+FNL+VRADNPNKKIGI
Sbjct: 86  LLGITVAVFYLVVRPKSPNYSIDAISVSGLNLLTSSSSSAISPLFNLTVRADNPNKKIGI 145

Query: 121 YYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQ 180
           YYLTGSSVRIY SNEKLSEGVLPDFFQP+KNVSVLR+VVRG GVNLSSGAKN +IE VKQ
Sbjct: 146 YYLTGSSVRIYFSNEKLSEGVLPDFFQPAKNVSVLRSVVRGTGVNLSSGAKNGLIESVKQ 205

Query: 181 RAVLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
           R V+LKVEIGVPIKVK+G+VKSWK++VKVNCDVTVDELT AAKIVKKNCDYSVKIW
Sbjct: 206 RVVVLKVEIGVPIKVKVGAVKSWKMRVKVNCDVTVDELTTAAKIVKKNCDYSVKIW 261

[Close]

BLAST of Cucsa.142720.1 vs. NCBI nr
Match: gi|920703488|gb|KOM46713.1| (hypothetical protein LR48_Vigan07g041700 [Vigna angularis])

HSP 1 Score: 256.1 bits (653), Expect = 5.8e-65
Identity = 125/233 (53.65%), Postives = 167/233 (71.67%), Query Frame = 1


Query: 4   PPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILLG 63
           P PGTYVI++PKDQ+YR+PP ENA R+  YT + HRR +RC SC   L+ IL+ILI+LLG
Sbjct: 42  PSPGTYVIKIPKDQVYRVPPAENARRYDQYTHRKHRR-SRCCSCCCWLIGILSILIVLLG 101

Query: 64  ITLAVFYFVVRPKSPNYSIDAISISGLNNLTSS---AISPVFNLSVRADNPNKKIGIYYL 123
           I   +FY V RPK+P Y+I+ I+I G+N  + S   AISP FN++V+ADNPN KIGIYYL
Sbjct: 102 IAAGIFYLVFRPKAPKYTIEDIAIRGINVTSPSSDVAISPEFNVTVKADNPNDKIGIYYL 161

Query: 124 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 183
             SS  ++ ++ +L  G LP F QPS NV+V   V++G G+ L S  +  ++E   +R V
Sbjct: 162 KDSSAEVFYNDARLCNGALPAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKV 221

Query: 184 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
            L V I  P+K+K+GSVK+WKI VK++CDVTV++LTA AKIV K CDY V +W
Sbjct: 222 PLTVRIRAPVKIKVGSVKTWKITVKLDCDVTVNDLTAQAKIVSKRCDYEVDLW 273

[Close]

BLAST of Cucsa.142720.1 vs. NCBI nr
Match: gi|950987645|ref|XP_014503816.1| (PREDICTED: protein YLS9-like [Vigna radiata var. radiata])

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-64
Identity = 123/233 (52.79%), Postives = 166/233 (71.24%), Query Frame = 1


Query: 4   PPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILIILLG 63
           PPPGTYVI++PKDQ+YR+PP ENA R+  YT + HRR +RC  C   L+ IL ILI+LLG
Sbjct: 42  PPPGTYVIKIPKDQVYRVPPAENARRYDQYTHRKHRR-SRCCCCCCWLIGILFILIVLLG 101

Query: 64  ITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSA---ISPVFNLSVRADNPNKKIGIYYL 123
           I   +FY V RP++P Y+I+ I++ G+N  + S+   ISP FN++V+ADNPN KIGIYYL
Sbjct: 102 IAAGIFYLVFRPEAPKYTIEDIAVRGINVTSPSSDVTISPEFNVTVKADNPNDKIGIYYL 161

Query: 124 TGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAV 183
             SS  ++ ++ +L  G +P F QPS NV+V   V++G G+ L S  +  ++E   +R V
Sbjct: 162 KDSSAEVFYNDARLCNGAIPAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKV 221

Query: 184 LLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
            L V I  P+K+K+GSVK+WKI VKV+CDVTV+ELTA AKIV K CDY V +W
Sbjct: 222 PLTVRIRAPVKIKVGSVKTWKITVKVDCDVTVNELTAQAKIVSKRCDYKVDLW 273

[Close]

BLAST of Cucsa.142720.1 vs. NCBI nr
Match: gi|1012362002|gb|KYP73185.1| (hypothetical protein KK1_005798 [Cajanus cajan])

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-64
Identity = 121/236 (51.27%), Postives = 171/236 (72.46%), Query Frame = 1


Query: 1   PSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTRQSHRRRNRCRSCLFCLLAILAILII 60
           PS  PP +YVI +PKDQIYR+PPPENA R+  YTR+ HR  NRC  CL  L+ ++ +L++
Sbjct: 35  PSQNPPVSYVIHIPKDQIYRVPPPENARRYDQYTRRKHRP-NRCCRCLCWLIGLIVVLVV 94

Query: 61  LLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTSSA---ISPVFNLSVRADNPNKKIGI 120
           LLGI   + Y V RP++PNY I++I++ G+N  ++SA   ISPVFN++V+ADNPN KIGI
Sbjct: 95  LLGIAAGILYLVFRPEAPNYGIESIAVRGINLTSASAAAAISPVFNVTVKADNPNDKIGI 154

Query: 121 YYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQ 180
           +YL  S   ++ ++ +LS G LP F+QPS NV+V R V++G G+ L S  +  ++  V +
Sbjct: 155 HYLKDSHAEVFYADVELSNGALPAFYQPSNNVTVFRTVLKGNGIVLRSEDRRALVNAVTK 214

Query: 181 RAVLLKVEIGVPIKVKIGSVKSWKIKVKVNCDVTVDELTAAAKIVKKNCDYSVKIW 234
           + V L V I  P+K+K+GSVK+WKI V+V+CDVTV+ LTA AKIV K+C+Y V +W
Sbjct: 215 QKVPLTVRIRAPVKIKVGSVKTWKITVRVDCDVTVNALTANAKIVSKHCNYGVDLW 269

The following BLAST results are available for this feature:

BLAST of Cucsa.142720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	4.6e-14	25.81	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	3.3e-12	27.70	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of Cucsa.142720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX01_CUCSA	2.8e-127	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G601000 PE=4 SV=1	[more]
A0A0S3RK74_PHAAN	4.0e-65	53.65	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G055600 PE=...	[more]
A0A0L9UVC0_PHAAN	4.0e-65	53.65	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g041700 PE=4 SV=1	[more]
A0A151U1M3_CAJCA	1.2e-64	51.27	Uncharacterized protein OS=Cajanus cajan GN=KK1_005798 PE=4 SV=1	[more]
B9HQ55_POPTR	3.4e-64	51.07	Harpin-induced family protein OS=Populus trichocarpa GN=POPTR_0009s16050g PE=4 S...	[more]

BLAST of Cucsa.142720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27080.1	8.0e-65	49.78	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G21130.1	1.9e-50	40.17	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G65690.1	2.3e-27	30.46	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G36970.1	3.3e-26	30.37	NDR1/HIN1-like 25	[more]
AT1G54540.1	3.6e-25	30.34	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cucsa.142720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452811\|ref\|XP_004144152.1\|	4.1e-127	100.00	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659100419\|ref\|XP_008451090.1\|	2.4e-111	86.86	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|920703488\|gb\|KOM46713.1\|	5.8e-65	53.65	hypothetical protein LR48_Vigan07g041700 [Vigna angularis]	[more]
gi\|950987645\|ref\|XP_014503816.1\|	1.7e-64	52.79	PREDICTED: protein YLS9-like [Vigna radiata var. radiata]	[more]
gi\|1012362002\|gb\|KYP73185.1\|	1.7e-64	51.27	hypothetical protein KK1_005798 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.142720	Cucsa.142720	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.142720.1	Cucsa.142720.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.142720.1.CDS.1	Cucsa.142720.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 106..208 score: 6.6
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 1..233 score: 1.2E
None	No IPR available	PANTHER	PTHR31852:SF0	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..233 score: 1.2E