Cucsa.137640.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.137640.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Restriction endonuclease, type II-like protein
Location	scaffold01053 : 405048 .. 406160 (+)
Sequence length	1113

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAGTAGTTTTCAACATTGGTTCAAAAATTGGCAAGAGCTTCGAAAGCATAAGTTAACAGCAAGTACTTTTGCTGGGGCAATTGGGTTTTGGCCTCGTCGAAGGACTCAACTATGGTTGGAGAAACTTGGGGCAATTGATCAATTTTGTGGTAATCTTGCTACTTGTTGGAGTAATATGAAAGAAGAAGAAGCACTCGAAAGATACAAGCTTATTACTGGAAACTCTGTTTTGTTTCCTGAATTTCAAGTCTATGGTAAAGCAAACTCGGAAGATGATTGGTTGGCTGCTTCACCTGATGGTGCAATTGATAAAATGGTTTATGGATTGCCTTCACGAGGTGTATTGGAGATTAAGTGCCCATTTTTTAACGGTGATTTGAGAAATGCTTTACCATGGTCACGAGTCCCTCGTTACTGTATTCCTCAGGCTCAAGGTTTGATGGAAATAATGGATAGGGATTGGATGGACTTTTATGTTTGGACTCCTAACGGTAGTAGTTTGTTTAGATTGTATCGAGATCCCGAATATTGGGATGTCTTGAAGATTGCTTTGTCGGATTTTTGGTGGAAGCATGTTCAACCTGCAAGGGAGATGTGTAGTAAATATGTCATTACAAATCCCCTCGTTGAGCTTAAGTCTCTTAGGCCGTCACCCAGGCATGAACTGTGTAGTTATATAGTTTGTGAGAGCAAACGGGTTGTCAATAATTCTAAGTTGCTCTTGCGTGAATTTGATGGGAGACTTCAAACCTAATTCATTGCAATCAATGGCTAAGCTTACAGTAAGGAATCTCAAACTCGAGCTTGAAGGGAGTTCTTGTTAACTCGAAAATTGCGGAATCTAACAATGATGTGAATGTTGTCAAACCAAGCACATCTCAAGTTTGACTACTACCCTTTTGCATCCATTGTTGACCCCCAGCCACGTGCTAGGGAAGTCCATCATTGCTTAGAGACATATTGAACATGCCGTGACACATATATCAGTCCCAATTCTAACTTCATTGGTGTGTAAGGATATGGTAGCAGCATGAAATGCAAAGGGCCATGGGGGAAGGTAAGCCTTTGGACTTCTGTTTGAAGGCTATTGATAATAGAAAAATCTGAACAC

mRNA sequence

TCCAGTAGTTTTCAACATTGGTTCAAAAATTGGCAAGAGCTTCGAAAGCATAAGTTAACAGCAAGTACTTTTGCTGGGGCAATTGGGTTTTGGCCTCGTCGAAGGACTCAACTATGGTTGGAGAAACTTGGGGCAATTGATCAATTTTGTGGTAATCTTGCTACTTGTTGGAGTAATATGAAAGAAGAAGAAGCACTCGAAAGATACAAGCTTATTACTGGAAACTCTGTTTTGTTTCCTGAATTTCAAGTCTATGGTAAAGCAAACTCGGAAGATGATTGGTTGGCTGCTTCACCTGATGGTGCAATTGATAAAATGGTTTATGGATTGCCTTCACGAGGTGTATTGGAGATTAAGTGCCCATTTTTTAACGGTGATTTGAGAAATGCTTTACCATGGTCACGAGTCCCTCGTTACTGTATTCCTCAGGCTCAAGGTTTGATGGAAATAATGGATAGGGATTGGATGGACTTTTATGTTTGGACTCCTAACGGTAGTAGTTTGTTTAGATTGTATCGAGATCCCGAATATTGGGATGTCTTGAAGATTGCTTTGTCGGATTTTTGGTGGAAGCATGTTCAACCTGCAAGGGAGATGTGTAGTAAATATGTCATTACAAATCCCCTCGTTGAGCTTAAGTCTCTTAGGCCGTCACCCAGGCATGAACTGTGTAGTTATATAGTTTGTGAGAGCAAACGGGTTGTCAATAATTCTAAGTTGCTCTTGCGTGAATTTGATGGGAGACTTCAAACCTAATTCATTGCAATCAATGGCTAAGCTTACAGTAAGGAATCTCAAACTCGAGCTTGAAGGGAGTTCTTGTTAACTCGAAAATTGCGGAATCTAACAATGATGTGAATGTTGTCAAACCAAGCACATCTCAAGTTTGACTACTACCCTTTTGCATCCATTGTTGACCCCCAGCCACGTGCTAGGGAAGTCCATCATTGCTTAGAGACATATTGAACATGCCGTGACACATATATCAGTCCCAATTCTAACTTCATTGGTGTGTAAGGATATGGTAGCAGCATGAAATGCAAAGGGCCATGGGGGAAGGTAAGCCTTTGGACTTCTGTTTGAAGGCTATTGATAATAGAAAAATCTGAACAC

Coding sequence (CDS)

ATGAAAGAAGAAGAAGCACTCGAAAGATACAAGCTTATTACTGGAAACTCTGTTTTGTTTCCTGAATTTCAAGTCTATGGTAAAGCAAACTCGGAAGATGATTGGTTGGCTGCTTCACCTGATGGTGCAATTGATAAAATGGTTTATGGATTGCCTTCACGAGGTGTATTGGAGATTAAGTGCCCATTTTTTAACGGTGATTTGAGAAATGCTTTACCATGGTCACGAGTCCCTCGTTACTGTATTCCTCAGGCTCAAGGTTTGATGGAAATAATGGATAGGGATTGGATGGACTTTTATGTTTGGACTCCTAACGGTAGTAGTTTGTTTAGATTGTATCGAGATCCCGAATATTGGGATGTCTTGAAGATTGCTTTGTCGGATTTTTGGTGGAAGCATGTTCAACCTGCAAGGGAGATGTGTAGTAAATATGTCATTACAAATCCCCTCGTTGAGCTTAAGTCTCTTAGGCCGTCACCCAGGCATGAACTGTGTAGTTATATAGTTTGTGAGAGCAAACGGGTTGTCAATAATTCTAAGTTGCTCTTGCGTGAATTTGATGGGAGACTTCAAACCTAA

Protein sequence

MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIKCPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWDVLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSKLLLREFDGRLQT*

Homology

[Close]

BLAST of Cucsa.137640.1 vs. TrEMBL
Match: A0A0A0KG47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405910 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-110
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 103 MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 162

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD
Sbjct: 163 CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 222

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK
Sbjct: 223 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 282

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 283 LLLREFDGRLQT 294

[Close]

BLAST of Cucsa.137640.1 vs. TrEMBL
Match: A0A0A0K4T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302370 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.6e-107
Identity = 186/192 (96.88%), Postives = 189/192 (98.44%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 111 MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 170

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGD+RNA PWSRVP YCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRD EYWD
Sbjct: 171 CPFFNGDMRNASPWSRVPLYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDVEYWD 230

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPAREMCSKYV+TNPL+ELKSLRPSPRHELCSYIVCESKRVVNNSK
Sbjct: 231 VLKIALSDFWWKHVQPAREMCSKYVVTNPLIELKSLRPSPRHELCSYIVCESKRVVNNSK 290

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 291 LLLREFDGRLQT 302

[Close]

BLAST of Cucsa.137640.1 vs. TrEMBL
Match: A0A061F0P2_THECC (DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_025578 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.6e-88
Identity = 152/191 (79.58%), Postives = 172/191 (90.05%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           +KEEEALERYKLITGN+V FPEFQVYGK ++E+ WLAASPDG +D+ VYGLP RGVLEIK
Sbjct: 153 IKEEEALERYKLITGNTVSFPEFQVYGKMDAEEGWLAASPDGLVDRFVYGLPLRGVLEIK 212

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFF GD+  A PW R+P YCIPQAQGLMEIMDRDWMDFYVWTP GSSLFR+YRD EYWD
Sbjct: 213 CPFFGGDMSKASPWRRIPLYCIPQAQGLMEIMDRDWMDFYVWTPKGSSLFRIYRDVEYWD 272

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLK+ALSDFWWKHVQPA+E+CSKYVIT+PL ELKSLRP+PRHEL SYIV ESKRVV+NS 
Sbjct: 273 VLKVALSDFWWKHVQPAKEICSKYVITDPLRELKSLRPAPRHELLSYIVYESKRVVDNSN 332

Query: 181 LLLREFDGRLQ 192
           LL+RE +G+L+
Sbjct: 333 LLIREINGQLK 343

[Close]

BLAST of Cucsa.137640.1 vs. TrEMBL
Match: M5XB27_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024412mg PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.8e-87
Identity = 146/190 (76.84%), Postives = 173/190 (91.05%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           +KEEEALERYKLITGNSVLFPEFQVYG  N+ DDWL ASPDG +D++VYGLPSRGVLEIK
Sbjct: 73  IKEEEALERYKLITGNSVLFPEFQVYGNRNAGDDWLGASPDGVVDRLVYGLPSRGVLEIK 132

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFF+G+++ A PWSR+P YC+PQAQGLMEI+DRDWMDFYVWTP GSSLFR+YRD EYWD
Sbjct: 133 CPFFDGNMKKATPWSRIPLYCVPQAQGLMEILDRDWMDFYVWTPKGSSLFRVYRDAEYWD 192

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
            LK+ LSDFWW HVQPARE+CSK  IT+PL+EL+SL+P+PRHE+CSYIV ESKR+V++SK
Sbjct: 193 GLKMVLSDFWWNHVQPAREICSKSQITDPLLELRSLKPAPRHEMCSYIVYESKRIVDSSK 252

Query: 181 LLLREFDGRL 191
           LL+RE +G+L
Sbjct: 253 LLMREINGKL 262

[Close]

BLAST of Cucsa.137640.1 vs. TrEMBL
Match: F6I2K8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00380 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.4e-85
Identity = 151/191 (79.06%), Postives = 168/191 (87.96%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           +KEEEALERYKLITGN+VLFPEFQVYGK + ED+WLAASPDG +D +VYGL SRGVLEIK
Sbjct: 74  IKEEEALERYKLITGNTVLFPEFQVYGKKDPEDNWLAASPDGIVDSLVYGLHSRGVLEIK 133

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGD   A PWSRVP Y IPQAQGLMEIMDRDWMDFYVWT NGSSLFRLYRD EYWD
Sbjct: 134 CPFFNGDKSIASPWSRVPLYYIPQAQGLMEIMDRDWMDFYVWTLNGSSLFRLYRDAEYWD 193

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFW+KHV PARE+C K+ I +PL EL+SL+P PRHELC YIV ESKR+V++SK
Sbjct: 194 VLKIALSDFWFKHVLPARELCRKHAINSPLTELRSLKPEPRHELCRYIVYESKRIVDDSK 253

Query: 181 LLLREFDGRLQ 192
           LL+RE  G+LQ
Sbjct: 254 LLMREIHGKLQ 264

[Close]

BLAST of Cucsa.137640.1 vs. TAIR10
Match: AT1G13810.1 (AT1G13810.1 Restriction endonuclease, type II-like superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 1


Query: 3   EEEALERYKLITGNSVLFPEFQVYGKANS-EDDWLAASPDGAIDKMVYGLPSRGVLEIKC 62
           E EALERY  +TGN +L PEF VY    S E++WL ASPDG I+ +  G+ S GVLE+KC
Sbjct: 113 EVEALERYNELTGNEILIPEFVVYKNGESPEENWLGASPDGVINVVKDGVTSCGVLEVKC 172

Query: 63  PFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWDV 122
           PF N D     PW +VP  C+PQ QGLMEI+D DW+D Y WT NGSSLFR++RD  +W+ 
Sbjct: 173 PFDNRDNSKVYPWKKVPYNCVPQLQGLMEIVDTDWLDLYCWTRNGSSLFRVWRDTAFWED 232

Query: 123 LKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSKL 182
           +K AL DFW  HV PARE+ + + I +P V+L+  +P   HE C  I+  ++R+  N+  
Sbjct: 233 MKPALFDFWQNHVLPAREIYNNFDIKDPQVKLREFKPKHWHEDCKKIMRGAERISANANR 292

Query: 183 LLREFDGRL 191
           L  E DG L
Sbjct: 293 LFYEIDGNL 301

[Close]

BLAST of Cucsa.137640.1 vs. TAIR10
Match: AT1G67660.1 (AT1G67660.1 Restriction endonuclease, type II-like superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 3   EEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIKCP 62
           E  A+ERYK I G  V    F ++  +N E  WL ASPDG +D         G+LE+KCP
Sbjct: 177 ESSAIERYKRIMGCEVGTMGFAIH--SNEEFHWLGASPDGILDCF-------GILEVKCP 236

Query: 63  FFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWDVL 122
           +  G     LPW +VP Y +PQ QG MEIMDR+W++ Y WT NGS++FR+ RD  YW ++
Sbjct: 237 YNKGKTETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRII 296

Query: 123 KIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSKLL 182
              L +FWW+ V PARE     ++     E+K   P+  H+     + +S  +   SKL+
Sbjct: 297 HDVLREFWWESVIPARE---ALLLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLV 347

Query: 183 LRE 186
            RE
Sbjct: 357 CRE 347

[Close]

BLAST of Cucsa.137640.1 vs. NCBI nr
Match: gi|700192625|gb|KGN47829.1| (hypothetical protein Csa_6G405910 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 2.2e-110
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 103 MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 162

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD
Sbjct: 163 CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 222

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK
Sbjct: 223 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 282

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 283 LLLREFDGRLQT 294

[Close]

BLAST of Cucsa.137640.1 vs. NCBI nr
Match: gi|778722290|ref|XP_004149919.2| (PREDICTED: uncharacterized protein LOC101207616 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 2.2e-110
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 74  MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 133

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD
Sbjct: 134 CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 193

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK
Sbjct: 194 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 253

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 254 LLLREFDGRLQT 265

[Close]

BLAST of Cucsa.137640.1 vs. NCBI nr
Match: gi|659113272|ref|XP_008456487.1| (PREDICTED: uncharacterized protein LOC103496427 [Cucumis melo])

HSP 1 Score: 397.5 bits (1020), Expect = 1.3e-107
Identity = 185/192 (96.35%), Postives = 190/192 (98.96%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 103 MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 162

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGD+RNA PWS+VPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD
Sbjct: 163 CPFFNGDMRNASPWSQVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 222

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPARE+CSKYVITNPL+ELKS RPSPRHELCSYIVCES+RVVNNSK
Sbjct: 223 VLKIALSDFWWKHVQPAREICSKYVITNPLIELKSFRPSPRHELCSYIVCESRRVVNNSK 282

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 283 LLLREFDGRLQT 294

[Close]

BLAST of Cucsa.137640.1 vs. NCBI nr
Match: gi|700189240|gb|KGN44473.1| (hypothetical protein Csa_7G302370 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.3e-107
Identity = 186/192 (96.88%), Postives = 189/192 (98.44%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 111 MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 170

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGD+RNA PWSRVP YCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRD EYWD
Sbjct: 171 CPFFNGDMRNASPWSRVPLYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDVEYWD 230

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPAREMCSKYV+TNPL+ELKSLRPSPRHELCSYIVCESKRVVNNSK
Sbjct: 231 VLKIALSDFWWKHVQPAREMCSKYVVTNPLIELKSLRPSPRHELCSYIVCESKRVVNNSK 290

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 291 LLLREFDGRLQT 302

[Close]

BLAST of Cucsa.137640.1 vs. NCBI nr
Match: gi|778726529|ref|XP_011659114.1| (PREDICTED: uncharacterized protein LOC101215512 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.3e-107
Identity = 186/192 (96.88%), Postives = 189/192 (98.44%), Query Frame = 1


Query: 1   MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 60
           MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK
Sbjct: 103 MKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWLAASPDGAIDKMVYGLPSRGVLEIK 162

Query: 61  CPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDPEYWD 120
           CPFFNGD+RNA PWSRVP YCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRD EYWD
Sbjct: 163 CPFFNGDMRNASPWSRVPLYCIPQAQGLMEIMDRDWMDFYVWTPNGSSLFRLYRDVEYWD 222

Query: 121 VLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSLRPSPRHELCSYIVCESKRVVNNSK 180
           VLKIALSDFWWKHVQPAREMCSKYV+TNPL+ELKSLRPSPRHELCSYIVCESKRVVNNSK
Sbjct: 223 VLKIALSDFWWKHVQPAREMCSKYVVTNPLIELKSLRPSPRHELCSYIVCESKRVVNNSK 282

Query: 181 LLLREFDGRLQT 193
           LLLREFDGRLQT
Sbjct: 283 LLLREFDGRLQT 294

The following BLAST results are available for this feature:

BLAST of Cucsa.137640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG47_CUCSA	1.5e-110	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405910 PE=4 SV=1	[more]
A0A0A0K4T5_CUCSA	1.6e-107	96.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302370 PE=4 SV=1	[more]
A0A061F0P2_THECC	3.6e-88	79.58	DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_025578 PE=4 S...	[more]
M5XB27_PRUPE	1.8e-87	76.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024412mg PE=4 SV=1	[more]
F6I2K8_VITVI	6.4e-85	79.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00380 PE=4 SV=...	[more]

BLAST of Cucsa.137640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13810.1	1.9e-51	50.79	Restriction endonuclease, type II-like superfamily protein	[more]
AT1G67660.1	1.1e-35	40.98	Restriction endonuclease, type II-like superfamily protein	[more]

BLAST of Cucsa.137640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192625\|gb\|KGN47829.1\|	2.2e-110	100.00	hypothetical protein Csa_6G405910 [Cucumis sativus]	[more]
gi\|778722290\|ref\|XP_004149919.2\|	2.2e-110	100.00	PREDICTED: uncharacterized protein LOC101207616 [Cucumis sativus]	[more]
gi\|659113272\|ref\|XP_008456487.1\|	1.3e-107	96.35	PREDICTED: uncharacterized protein LOC103496427 [Cucumis melo]	[more]
gi\|700189240\|gb\|KGN44473.1\|	2.3e-107	96.88	hypothetical protein Csa_7G302370 [Cucumis sativus]	[more]
gi\|778726529\|ref\|XP_011659114.1\|	2.3e-107	96.88	PREDICTED: uncharacterized protein LOC101215512 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011335	Restrct_endonuc-II-like
IPR011604	Exonuc_phg/RecB_C
IPR019080	YqaJ_viral_recombinase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0004518	nuclease activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.137640	Cucsa.137640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.137640.1	Cucsa.137640.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.137640.1.five_prime_UTR.1	Cucsa.137640.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.137640.1.CDS.1	Cucsa.137640.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.137640.1.three_prime_UTR.1	Cucsa.137640.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011335	Restriction endonuclease type II-like	unknown	SSF52980	Restriction endonuclease-like	coord: 3..140 score: 1.72
IPR011604	Exonuclease, phage-type/RecB, C-terminal	GENE3D	G3DSA:3.90.320.10		coord: 2..140 score: 8.8
IPR019080	YqaJ viral recombinase	PFAM	PF09588	YqaJ	coord: 3..94 score: 2.