Cucsa.105920.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGAAGCATCTCTCAATCGTAATTCCAAGAAGTTAAAGGGGCTAATGCGAATATTCAAGAAGATAGAGGACCCGCGGGAAAATCATAAAGTGGTGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTCTCTTTTTCCCGGCGACTGAACTTCCACTCAGAACTTCAGAGAGCTTACCCATGGCGATCATGGCGTTTCTCTCTTCACCACCCCACATTCCCTCTCTTTCTCCACCGTTTCACACCAACTTTCTCTTCTCTCCCATTTCCTCGTCCTTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACCTTGGCGGCTTCCGGATTTTGCTTTAGAATACACTGTCTGACAAAGAACGAGCTGCACCGGTTACTCAGAGATCCGATCCTAAGGCTGGAGTTCCCATTTATAAGCCCAAAACGTACGAGGTGTTAGTCTCCGATGCTGCTAACTCTCTTGCTTATGCTCTGGAAGATGGAAAGATGCGCTTGGAGATTGATTTCCCGTAATCTtTCTTTTTCACTATGAATATTGATTGGTCTTACTTTTCGGTTCTATTAGGCTCTTTCTTTTGAGAAATGCTGTTCATTCCTTTAATTTGTTACTTAGCAAGTTAGCATCAGAGTTACTACTACCATGTTGTACGTTTGTTTTCGTCTCTTCTAATCCTCATGCCTCAAGTATCGTAATCGGTTGGGCTTTTGTTAAGATGATCTAGCGGGTTTAATTTCGGAGCTTCCTTCTTGCAGAGGACCCAATTTAAAATTATTTGAAACTGAGATTtcAACCGTAGTCTGTTTAGGTAAATTgTtCGTGCCATGATCGAGGAGTTCCTTCTCTGTCTGGCTTTTTAGGGAGAAAAGCAGCTTATTATGGGTTGTTAGGTGTGAGCTTTAGCGTGGAATATTGAGGGAGAGAAGAGAAGCAGTGTTATAGAGGCGTGGTCGTTGGAATTTAGTTTCAAAGGCTTTTTGTAATTATTCTTTTAAGTAGAATCTTGTATAGTTGAAACCCTTTTGCAAGATGGGATTTTACAGACTTGATTTTTGTAGTAGTAAATTGTTTCTGAACACGGCTTATGAGAAGTAACAATATCCTTTGCTTTAGTGTCGGAATGTGGTTAATTCTCGAATTTATTATCTAGTTCTTCATAGTATAATTTTCATTATTTTCTAATTTTGTTTTTtGTTTTTtGTTTCCCTTTTTTGGTGGGATTTCCCATATTCAGACCCCTGCCTAGCAACATTTCTTCGTATAAGGTATCTTTCTCCAGCACGTTTGGAATTTTCTGCTTAGAACGTTTTGTTTTCTCATTATTAAAATATACCTCATATAGGTTTGCCCCCCTATACATACGGAAATCCAGTCTGTTTTGCAGCTCGTTTTAGTTATTGATTTTGAATGTATTCGTTTAAAATAGGTAACAGGGTCATTTTATAATATGTCCAAGAGTTTTATGTTTGTGTATTTTTCTTGTATGAGCGAGCCATGAACATTAAGACTACTATTCTGTGCGATGAAACCAGTTGAAAAGAAGTTGTGAAAAGTAAACCATGAGATATAGGTTAATTAATTGCGCCACCGAGATTTAACACTTGATGTATTAGAGCATGGTTCAGATTCAAAACTTTGTTGGTTTAGGTTATTTTCAATATTCTGGATTGTTGATGATAGCATATGAATATTTGATTTGAGAAAATTTCTAAATATGTAAAGGGATCTTCAGATGATTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGAAATCTTCAAGAAAAGAGAGGAATTAGATCTTGCATTGTAAGCAACTATATATCTATACACACTTAAATATTGCAAATCTCTTCTGAATTTTGTGCAGCTATTAAAATCTCCTGCTATAAATTTAGGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGGTAACTAGTTAACTCTTCAAACTTCTTTGTTTTGCTTCATTCGTAAGAAGTAAATATTTTGTTTAGGATAGTAAGAGTACGAAAAGAGAGGGAAGATGCAAACCAAGTGAAAAGAGAAACTCTTTTGTTGTCATTAATCGGTTAGATAAATAATTTTGGAAGATTTGGTAATAGCACGACAAGAAAAAGGACATCCTAAAGATGTGAAAAAAAAATCTGTGTACTCCATGTTGAATAAATAACAACCGACCGACCACTCTCACTCTCCGACCAACTGACTTCAGTTTGGTCGGTTGCTCGTTTTTTCGTACACCAACAGCAAAGATATGCATGAATTCAAGATTGTTCATGCCACTTAGAATGTTTAATATCCAGCATCTTCTCACATATATTTTGGTGTCACATATTATAGTTGAAGAATAAATAAATATCTGAGAACACAATATAATTACTAGTAACAAATGATGTGAGCTAATCGAAGGCATGCTTGTTCACACAATATAAATCTTGGTCTCCGTTTTATATGCTCATTTGACTTCGTTTTTCCCTTTTGTCTTTCAGATCGATGGTATAACTGTAAGTTCCCTGGACGATGTTCCTGCTGGTGCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGACAATGCAGGTTGGTTCTAAAGACATGGATCTCACAAGATGTTTTACATTCTTATCCTCTTTTTTTtCTTTtATTCTGTGCATGCCATGGCCATGTATTTCACTATGCGTTTTACAAATATACGTCATTTTACGTGACCCTAGGTCTCTAACCATTATGGCAAGACTGCAACCTACGTTCATAGACTGTAAAAAACTTGATTTAGAAGAAAGAAAATGTCAGGAAATAAAAAGAAGAGCCAGAGGGAGAAAATATTGATGAGAGGAAAAAAAACTATATGAATTGTGATAGACCTTAATTCTCATATGAGAAAGCTATTTATAAACTTAAAACTGCCTCTTCCAATGTATTTCACTTCACTTTTGTGGATATAAGCATGTTTCTTCTTCCTCAGCTGGTTTGTATACGTCATATTGTAATCATCTTTTATTTCTTTACCTTCTTTCCGGAACCAACATTCTCATTTAATGATTTCTCACTCTTTGCAATCCATCTGGTTTGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGTATGATGTCCATGCTAATTGCAAGATGGCAGTTTTTGAACCTTTGGCATACCTTGATTAtCTTCTGATTAAAAGTTTTCATGATTTCTTCTCTAATTGGTTACATTATGCTAATTtCCGTTTTTTCAGCACAAATTATAATTTTTTTCTTGAAAACGTATTCCTCCCATATATTATGATTCAGCTGTCTACAAAATACTGATATGAATTCTTATAATTATTACCATTAATAAGCGACTTTTTTCACTGTGGGATCGATGGTTATAAAATGTCTTTTTCCAAACTTACCAAGCACGAGCTGAGTAAGACATATTATTGACTTTCTAAGTTACATTTTCTCACACAATAGGTAATGTGTTCTGTTAACTTCATTTTGGGATTTGCAGGAAACTTTTGCTTCGTCAATCCCcGCCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGTCCTCTTCATCCATCTTTGATAGATGCTTGGTTCATATATGCAACTATTGATCAAAAGTTTGTAAACTTACAGTGCGGACTTGGGCTTACTGGGATTTCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGGTTTTGGATCtCATCATGGAACACTTTTCTAATTACATTGACATATATACATTTTGACTAAATTATCTTCTTTTGGTTCTCCTTGTGGGAGGGATACCAAGACAGTAGCAGTAGCACCTTATATTGTTAATTACAGTGGAGCGTTGTTTCGTCAATACCcGGTGTGTCTACTGTTTTATTGAACTTGGTGTTGGAGATTTTTtTTTCCTTTTTTAATTCTCTTGATAACTTTCTCGGTCCAAATTGGTTCACCACCCACTTGAGTTTTGCTATCTGAGTTTTAGACTCATCTGCTTTTTTACATCAATCTGTTGTCATTTCTATTCATATTCATAATACTTTCAGGACCTTGGCAAGTGATGCTGAAACAATCTGATAATTCTTATGCCTGCGTTGCAGAGAGTGAAACAAGGTTCACCCTTGGTGAAGTATGTTAAACTAAAGTACTTTGAACTTTTAGATGTTTTATCATTTGTCTGGTGTTTCTGGACTAACTGTTGCTCGTAATTTAGACCAAAGATGAACTACTGAGGGTCCTTGGACTACAGGAGGAGCAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGTTCTCCCTTTATATTTGTGATTCTGTTTTATATTTTTCCTTCTAGATTTATTGCTACCTTTTCTTGTACTATTAATTCTTATTTGCTTCCACACCAACCTACCAGAAATCTGAAGAGAAATCTGCTTCATATTGTGCTGCCTACGTTTTTTATTCAGTGAAATGATCCTTTATGAAGCTAACACTTCAAATCTGCTTCAATAAAATTATGGGATACTGTTGAAATCTAGTCTACTTTTGCAGGCTGCCACTTGGTGGGAAGAAGATGTTGATTCTGAAGTATCTTCTGCATGGCGTAGTTGAGCGGTTCGAGTGTCTCAACTATTCCTCACATTTTCATGGACACAACATCGACGATATTGGACTCCTAGTTCAAACGGATGGCTTCTTTCTTAAAGACTCTCGTGGCTCTCTTTGAACAGTTACTGCAGgCAAATTGTATCAGCTCTTTCAACCCACCAACCTCAGAAGATTGACACAAACTTGAATCCAACTCATTCACCTCTGGAGTTCAAGGTGAAGTGGTCTGTACATTTTATAAGTCGCCATAAATTACAATGTGTTGTTCATCCTCGATACCGTGTTTCGTTTTCCTTTTTCACTCATGTTCCTTCAAAAAGTATAAATCAaGCATCTCATATGATTTGATCATTGTCTAGAATGAAGTT ATGTTAGAAGCATCTCTCAATCGTAATTCCAAGAAGTTAAAGGGGCTAATGCGAATATTCAAGAAGATAGAGGACCCGCGGGAAAATCATAAAGTGGTGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTCTCTTTTTCCCGGCGACTGAACTTCCACTCAGAACTTCAGAGAGCTTACCCATGGCGATCATGGCGTTTCTCTCTTCACCACCCCACATTCCCTCTCTTTCTCCACCGTTTCACACCAACTTTCTCTTCTCTCCCATTTCCTCGTCCTTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACCTTGGCGGCTTCCGGATTTTGCTTTAGAATACACTAGATCCGATCCTAAGGCTGGAGTTCCCATTTATAAGCCCAAAACGTACGAGGTGTTAGTCTCCGATGCTGCTAACTCTCTTGCTTATGCTCTGGAAGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCTTCGTATAAGGGATCTTCAGATGATTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGAAATCTTCAAGAAAAGAGAGGAATTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGATCGATGGTATAACTGTAAGTTCCCTGGACGATGTTCCTGCTGGTGCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGACAATGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCCGCCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGTGCGGACTTGGGCTTACTGGGATTTCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGACAGTAGCAGTAGCACCTTATATTGTTAATTACAGTGGAGCGTTGTTTCGTCAATACCCGGACCTTGGCAAGTGATGCTGAAACAATCTGATAATTCTTATGCCTGCGTTGCAGAGAGTGAAACAAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTGAGGGTCCTTGGACTACAGGAGGAGCAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATGTTGATTCTGAAGTATCTTCTGCATGGCGTAGTTGAGCGGTTCGAGTGTCTCAACTATTCCTCACATTTTCATGGACACAACATCGACGATATTGGACTCCTAGTTCAAACGGATGGCTTCTTTCTTAAAGACTCTCGTGGCTCTCTTTGAACAGTTACTGCAGGCAAATTGTATCAGCTCTTTCAACCCACCAACCTCAGAAGATTGACACAAACTTGAATCCAACTCATTCACCTCTGGAGTTCAAGGTGAAGTGGTCTGTACATTTTATAAGTCGCCATAAATTACAATGTGTTGTTCATCCTCGATACCGTGTTTCGTTTTCCTTTTTCACTCATGTTCCTTCAAAAAGTATAAATCAAGCATCTCATATGATTTGATCATTGTCTAGAATGAAGTT ATGTTAGAAGCATCTCTCAATCGTAATTCCAAGAAGTTAAAGGGGCTAATGCGAATATTCAAGAAGATAGAGGACCCGCGGGAAAATCATAAAGTGGTGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTCTCTTTTTCCCGGCGACTGAACTTCCACTCAGAACTTCAGAGAGCTTACCCATGGCGATCATGGCGTTTCTCTCTTCACCACCCCACATTCCCTCTCTTTCTCCACCGTTTCACACCAACTTTCTCTTCTCTCCCATTTCCTCGTCCTTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACCTTGGCGGCTTCCGGATTTTGCTTTAGAATACACTAGATCCGATCCTAAGGCTGGAGTTCCCATTTATAAGCCCAAAACGTACGAGGTGTTAGTCTCCGATGCTGCTAACTCTCTTGCTTATGCTCTGGAAGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCTTCGTATAAGGGATCTTCAGATGATTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGAAATCTTCAAGAAAAGAGAGGAATTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGATCGATGGTATAACTGTAAGTTCCCTGGACGATGTTCCTGCTGGTGCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGACAATGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCcGCCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGTGCGGACTTGGGCTTACTGGGATTTCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGACAGTAGCAGTAGCACCTTATATTGTTAATTACAGTGGAGCGTTGTTTCGTCAATACCcGGACCTTGGCAAGTGA MLEASLNRNSKKLKGLMRIFKKIEDPRENHKVVSSSSLSSHPNDRLSFSRRLNFHSELQRAYPWRSWRFSLHHPTFPLFLHRFTPTFSSLPFPRPYGVLLDPVYLALKPWRLPDFALEYTRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALFRQYPDLGK*
BLAST of Cucsa.105920.1 vs. Swiss-Prot
Match: LPA3_ARATH (Protein LOW PSII ACCUMULATION 3, chloroplastic OS=Arabidopsis thaliana GN=LPA3 PE=1 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 9.9e-112 Identity = 193/246 (78.46%), Postives = 220/246 (89.43%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. TrEMBL
Match: A0A0A0KA03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431980 PE=4 SV=1) HSP 1 Score: 485.0 bits (1247), Expect = 8.4e-134 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. TrEMBL
Match: V7AQJ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G161700g PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 1.6e-116 Identity = 217/287 (75.61%), Postives = 242/287 (84.32%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. TrEMBL
Match: I1KVM9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G219200 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115 Identity = 208/244 (85.25%), Postives = 224/244 (91.80%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. TrEMBL
Match: A0A0B2S1P5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007089 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115 Identity = 208/244 (85.25%), Postives = 224/244 (91.80%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. TrEMBL
Match: M5WSE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007199mg PE=4 SV=1) HSP 1 Score: 424.5 bits (1090), Expect = 1.3e-115 Identity = 205/254 (80.71%), Postives = 228/254 (89.76%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. TAIR10
Match: AT1G73060.1 (AT1G73060.1 Low PSII Accumulation 3) HSP 1 Score: 404.8 bits (1039), Expect = 5.6e-113 Identity = 193/246 (78.46%), Postives = 220/246 (89.43%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. NCBI nr
Match: gi|449436191|ref|XP_004135877.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus]) HSP 1 Score: 485.0 bits (1247), Expect = 1.2e-133 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. NCBI nr
Match: gi|659122509|ref|XP_008461181.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis melo]) HSP 1 Score: 476.9 bits (1226), Expect = 3.3e-131 Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. NCBI nr
Match: gi|593267304|ref|XP_007135830.1| (hypothetical protein PHAVU_010G161700g [Phaseolus vulgaris]) HSP 1 Score: 427.6 bits (1098), Expect = 2.3e-116 Identity = 217/287 (75.61%), Postives = 242/287 (84.32%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. NCBI nr
Match: gi|951036463|ref|XP_014516619.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Vigna radiata var. radiata]) HSP 1 Score: 424.9 bits (1091), Expect = 1.5e-115 Identity = 212/264 (80.30%), Postives = 233/264 (88.26%), Query Frame = 1
BLAST of Cucsa.105920.1 vs. NCBI nr
Match: gi|734416119|gb|KHN38047.1| (hypothetical protein glysoja_007089 [Glycine soja]) HSP 1 Score: 424.9 bits (1091), Expect = 1.5e-115 Identity = 208/244 (85.25%), Postives = 224/244 (91.80%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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