Cucsa.105920 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.105920
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLow PSII Accumulation 3 isoform 3
Locationscaffold00929 : 362175 .. 367295 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAAGCATCTCTCAATCGTAATTCCAAGAAGTTAAAGGGGCTAATGCGAATATTCAAGAAGATAGAGGACCCGCGGGAAAATCATAAAGTGGTGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTCTCTTTTTCCCGGCGACTGAACTTCCACTCAGAACTTCAGAGAGCTTACCCATGGCGATCATGGCGTTTCTCTCTTCACCACCCCACATTCCCTCTCTTTCTCCACCGTTTCACACCAACTTTCTCTTCTCTCCCATTTCCTCGTCCTTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACCTTGGCGGCTTCCGGATTTTGCTTTAGAATACACTGTCTGACAAAGAACGAGCTGCACCGGTTACTCAGAGATCCGATCCTAAGGCTGGAGTTCCCATTTATAAGCCCAAAACGTACGAGGTGTTAGTCTCCGATGCTGCTAACTCTCTTGCTTATGCTCTGGAAGATGGAAAGATGCGCTTGGAGATTGATTTCCCGTAATCTtTCTTTTTCACTATGAATATTGATTGGTCTTACTTTTCGGTTCTATTAGGCTCTTTCTTTTGAGAAATGCTGTTCATTCCTTTAATTTGTTACTTAGCAAGTTAGCATCAGAGTTACTACTACCATGTTGTACGTTTGTTTTCGTCTCTTCTAATCCTCATGCCTCAAGTATCGTAATCGGTTGGGCTTTTGTTAAGATGATCTAGCGGGTTTAATTTCGGAGCTTCCTTCTTGCAGAGGACCCAATTTAAAATTATTTGAAACTGAGATTtcAACCGTAGTCTGTTTAGGTAAATTgTtCGTGCCATGATCGAGGAGTTCCTTCTCTGTCTGGCTTTTTAGGGAGAAAAGCAGCTTATTATGGGTTGTTAGGTGTGAGCTTTAGCGTGGAATATTGAGGGAGAGAAGAGAAGCAGTGTTATAGAGGCGTGGTCGTTGGAATTTAGTTTCAAAGGCTTTTTGTAATTATTCTTTTAAGTAGAATCTTGTATAGTTGAAACCCTTTTGCAAGATGGGATTTTACAGACTTGATTTTTGTAGTAGTAAATTGTTTCTGAACACGGCTTATGAGAAGTAACAATATCCTTTGCTTTAGTGTCGGAATGTGGTTAATTCTCGAATTTATTATCTAGTTCTTCATAGTATAATTTTCATTATTTTCTAATTTTGTTTTTtGTTTTTtGTTTCCCTTTTTTGGTGGGATTTCCCATATTCAGACCCCTGCCTAGCAACATTTCTTCGTATAAGGTATCTTTCTCCAGCACGTTTGGAATTTTCTGCTTAGAACGTTTTGTTTTCTCATTATTAAAATATACCTCATATAGGTTTGCCCCCCTATACATACGGAAATCCAGTCTGTTTTGCAGCTCGTTTTAGTTATTGATTTTGAATGTATTCGTTTAAAATAGGTAACAGGGTCATTTTATAATATGTCCAAGAGTTTTATGTTTGTGTATTTTTCTTGTATGAGCGAGCCATGAACATTAAGACTACTATTCTGTGCGATGAAACCAGTTGAAAAGAAGTTGTGAAAAGTAAACCATGAGATATAGGTTAATTAATTGCGCCACCGAGATTTAACACTTGATGTATTAGAGCATGGTTCAGATTCAAAACTTTGTTGGTTTAGGTTATTTTCAATATTCTGGATTGTTGATGATAGCATATGAATATTTGATTTGAGAAAATTTCTAAATATGTAAAGGGATCTTCAGATGATTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGAAATCTTCAAGAAAAGAGAGGAATTAGATCTTGCATTGTAAGCAACTATATATCTATACACACTTAAATATTGCAAATCTCTTCTGAATTTTGTGCAGCTATTAAAATCTCCTGCTATAAATTTAGGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGGTAACTAGTTAACTCTTCAAACTTCTTTGTTTTGCTTCATTCGTAAGAAGTAAATATTTTGTTTAGGATAGTAAGAGTACGAAAAGAGAGGGAAGATGCAAACCAAGTGAAAAGAGAAACTCTTTTGTTGTCATTAATCGGTTAGATAAATAATTTTGGAAGATTTGGTAATAGCACGACAAGAAAAAGGACATCCTAAAGATGTGAAAAAAAAATCTGTGTACTCCATGTTGAATAAATAACAACCGACCGACCACTCTCACTCTCCGACCAACTGACTTCAGTTTGGTCGGTTGCTCGTTTTTTCGTACACCAACAGCAAAGATATGCATGAATTCAAGATTGTTCATGCCACTTAGAATGTTTAATATCCAGCATCTTCTCACATATATTTTGGTGTCACATATTATAGTTGAAGAATAAATAAATATCTGAGAACACAATATAATTACTAGTAACAAATGATGTGAGCTAATCGAAGGCATGCTTGTTCACACAATATAAATCTTGGTCTCCGTTTTATATGCTCATTTGACTTCGTTTTTCCCTTTTGTCTTTCAGATCGATGGTATAACTGTAAGTTCCCTGGACGATGTTCCTGCTGGTGCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGACAATGCAGGTTGGTTCTAAAGACATGGATCTCACAAGATGTTTTACATTCTTATCCTCTTTTTTTtCTTTtATTCTGTGCATGCCATGGCCATGTATTTCACTATGCGTTTTACAAATATACGTCATTTTACGTGACCCTAGGTCTCTAACCATTATGGCAAGACTGCAACCTACGTTCATAGACTGTAAAAAACTTGATTTAGAAGAAAGAAAATGTCAGGAAATAAAAAGAAGAGCCAGAGGGAGAAAATATTGATGAGAGGAAAAAAAACTATATGAATTGTGATAGACCTTAATTCTCATATGAGAAAGCTATTTATAAACTTAAAACTGCCTCTTCCAATGTATTTCACTTCACTTTTGTGGATATAAGCATGTTTCTTCTTCCTCAGCTGGTTTGTATACGTCATATTGTAATCATCTTTTATTTCTTTACCTTCTTTCCGGAACCAACATTCTCATTTAATGATTTCTCACTCTTTGCAATCCATCTGGTTTGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGTATGATGTCCATGCTAATTGCAAGATGGCAGTTTTTGAACCTTTGGCATACCTTGATTAtCTTCTGATTAAAAGTTTTCATGATTTCTTCTCTAATTGGTTACATTATGCTAATTtCCGTTTTTTCAGCACAAATTATAATTTTTTTCTTGAAAACGTATTCCTCCCATATATTATGATTCAGCTGTCTACAAAATACTGATATGAATTCTTATAATTATTACCATTAATAAGCGACTTTTTTCACTGTGGGATCGATGGTTATAAAATGTCTTTTTCCAAACTTACCAAGCACGAGCTGAGTAAGACATATTATTGACTTTCTAAGTTACATTTTCTCACACAATAGGTAATGTGTTCTGTTAACTTCATTTTGGGATTTGCAGGAAACTTTTGCTTCGTCAATCCCcGCCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGTCCTCTTCATCCATCTTTGATAGATGCTTGGTTCATATATGCAACTATTGATCAAAAGTTTGTAAACTTACAGTGCGGACTTGGGCTTACTGGGATTTCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGGTTTTGGATCtCATCATGGAACACTTTTCTAATTACATTGACATATATACATTTTGACTAAATTATCTTCTTTTGGTTCTCCTTGTGGGAGGGATACCAAGACAGTAGCAGTAGCACCTTATATTGTTAATTACAGTGGAGCGTTGTTTCGTCAATACCcGGTGTGTCTACTGTTTTATTGAACTTGGTGTTGGAGATTTTTtTTTCCTTTTTTAATTCTCTTGATAACTTTCTCGGTCCAAATTGGTTCACCACCCACTTGAGTTTTGCTATCTGAGTTTTAGACTCATCTGCTTTTTTACATCAATCTGTTGTCATTTCTATTCATATTCATAATACTTTCAGGACCTTGGCAAGTGATGCTGAAACAATCTGATAATTCTTATGCCTGCGTTGCAGAGAGTGAAACAAGGTTCACCCTTGGTGAAGTATGTTAAACTAAAGTACTTTGAACTTTTAGATGTTTTATCATTTGTCTGGTGTTTCTGGACTAACTGTTGCTCGTAATTTAGACCAAAGATGAACTACTGAGGGTCCTTGGACTACAGGAGGAGCAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGTTCTCCCTTTATATTTGTGATTCTGTTTTATATTTTTCCTTCTAGATTTATTGCTACCTTTTCTTGTACTATTAATTCTTATTTGCTTCCACACCAACCTACCAGAAATCTGAAGAGAAATCTGCTTCATATTGTGCTGCCTACGTTTTTTATTCAGTGAAATGATCCTTTATGAAGCTAACACTTCAAATCTGCTTCAATAAAATTATGGGATACTGTTGAAATCTAGTCTACTTTTGCAGGCTGCCACTTGGTGGGAAGAAGATGTTGATTCTGAAGTATCTTCTGCATGGCGTAGTTGAGCGGTTCGAGTGTCTCAACTATTCCTCACATTTTCATGGACACAACATCGACGATATTGGACTCCTAGTTCAAACGGATGGCTTCTTTCTTAAAGACTCTCGTGGCTCTCTTTGAACAGTTACTGCAGgCAAATTGTATCAGCTCTTTCAACCCACCAACCTCAGAAGATTGACACAAACTTGAATCCAACTCATTCACCTCTGGAGTTCAAGGTGAAGTGGTCTGTACATTTTATAAGTCGCCATAAATTACAATGTGTTGTTCATCCTCGATACCGTGTTTCGTTTTCCTTTTTCACTCATGTTCCTTCAAAAAGTATAAATCAaGCATCTCATATGATTTGATCATTGTCTAGAATGAAGTT

mRNA sequence

ATGTTAGAAGCATCTCTCAATCGTAATTCCAAGAAGTTAAAGGGGCTAATGCGAATATTCAAGAAGATAGAGGACCCGCGGGAAAATCATAAAGTGGTGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTCTCTTTTTCCCGGCGACTGAACTTCCACTCAGAACTTCAGAGAGCTTACCCATGGCGATCATGGCGTTTCTCTCTTCACCACCCCACATTCCCTCTCTTTCTCCACCGTTTCACACCAACTTTCTCTTCTCTCCCATTTCCTCGTCCTTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACCTTGGCGGCTTCCGGATTTTGCTTTAGAATACACTAGATCCGATCCTAAGGCTGGAGTTCCCATTTATAAGCCCAAAACGTACGAGGTGTTAGTCTCCGATGCTGCTAACTCTCTTGCTTATGCTCTGGAAGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCTTCGTATAAGGGATCTTCAGATGATTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGAAATCTTCAAGAAAAGAGAGGAATTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGATCGATGGTATAACTGTAAGTTCCCTGGACGATGTTCCTGCTGGTGCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGACAATGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCCGCCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGTGCGGACTTGGGCTTACTGGGATTTCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGACAGTAGCAGTAGCACCTTATATTGTTAATTACAGTGGAGCGTTGTTTCGTCAATACCCGGACCTTGGCAAGTGATGCTGAAACAATCTGATAATTCTTATGCCTGCGTTGCAGAGAGTGAAACAAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTGAGGGTCCTTGGACTACAGGAGGAGCAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATGTTGATTCTGAAGTATCTTCTGCATGGCGTAGTTGAGCGGTTCGAGTGTCTCAACTATTCCTCACATTTTCATGGACACAACATCGACGATATTGGACTCCTAGTTCAAACGGATGGCTTCTTTCTTAAAGACTCTCGTGGCTCTCTTTGAACAGTTACTGCAGGCAAATTGTATCAGCTCTTTCAACCCACCAACCTCAGAAGATTGACACAAACTTGAATCCAACTCATTCACCTCTGGAGTTCAAGGTGAAGTGGTCTGTACATTTTATAAGTCGCCATAAATTACAATGTGTTGTTCATCCTCGATACCGTGTTTCGTTTTCCTTTTTCACTCATGTTCCTTCAAAAAGTATAAATCAAGCATCTCATATGATTTGATCATTGTCTAGAATGAAGTT

Coding sequence (CDS)

ATGTTAGAAGCATCTCTCAATCGTAATTCCAAGAAGTTAAAGGGGCTAATGCGAATATTCAAGAAGATAGAGGACCCGCGGGAAAATCATAAAGTGGTGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTCTCTTTTTCCCGGCGACTGAACTTCCACTCAGAACTTCAGAGAGCTTACCCATGGCGATCATGGCGTTTCTCTCTTCACCACCCCACATTCCCTCTCTTTCTCCACCGTTTCACACCAACTTTCTCTTCTCTCCCATTTCCTCGTCCTTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACCTTGGCGGCTTCCGGATTTTGCTTTAGAATACACTAGATCCGATCCTAAGGCTGGAGTTCCCATTTATAAGCCCAAAACGTACGAGGTGTTAGTCTCCGATGCTGCTAACTCTCTTGCTTATGCTCTGGAAGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCTTCGTATAAGGGATCTTCAGATGATTTCATTGATGCAAATATTCAACTGGCCCTGGCTGTTGCAAGAAATCTTCAAGAAAAGAGAGGAATTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGTTGTTCAAAACAGCTCTTGACTCGATCGATGGTATAACTGTAAGTTCCCTGGACGATGTTCCTGCTGGTGCTGTCACATCTTTCTTCAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGACGACAATGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCcGCCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGTGCGGACTTGGGCTTACTGGGATTTCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGACAGTAGCAGTAGCACCTTATATTGTTAATTACAGTGGAGCGTTGTTTCGTCAATACCcGGACCTTGGCAAGTGA

Protein sequence

MLEASLNRNSKKLKGLMRIFKKIEDPRENHKVVSSSSLSSHPNDRLSFSRRLNFHSELQRAYPWRSWRFSLHHPTFPLFLHRFTPTFSSLPFPRPYGVLLDPVYLALKPWRLPDFALEYTRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALFRQYPDLGK*
Homology
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BLAST of Cucsa.105920 vs. Swiss-Prot
Match: LPA3_ARATH (Protein LOW PSII ACCUMULATION 3, chloroplastic OS=Arabidopsis thaliana GN=LPA3 PE=1 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 9.9e-112
Identity = 193/246 (78.46%), Postives = 220/246 (89.43%), Query Frame = 1 

Query: 120 TRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDF 179
           + SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K RLEIDFPPLPS+ISSYKGSSDDF
Sbjct: 39  SNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSSDDF 98

Query: 180 IDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA 239
           IDANIQLA+ V R LQEK   R+CIVFPDKPEKRRASQ FK A DS+DGI++ SLDD+P 
Sbjct: 99  IDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDDIPG 158

Query: 240 GAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIP 299
            +VT+FFRS+R+TLDFDFED+N G W   +PP+LYIFINCSTREL  IEK+VETFASS P
Sbjct: 159 TSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFASSTP 218

Query: 300 ALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGA 359
           ALLFNLEL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSKTVAVAP+++NY+GA
Sbjct: 219 ALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGA 278

Query: 360 LFRQYP 366
           LFRQYP
Sbjct: 279 LFRQYP 284

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BLAST of Cucsa.105920 vs. TrEMBL
Match: A0A0A0KA03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431980 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 8.4e-134
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

Query: 121 RSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFI 180
           RSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFI
Sbjct: 70  RSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFI 129

Query: 181 DANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG 240
           DANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG
Sbjct: 130 DANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG 189

Query: 241 AVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPA 300
           AVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPA
Sbjct: 190 AVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPA 249

Query: 301 LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGAL 360
           LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGAL
Sbjct: 250 LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGAL 309

Query: 361 FRQY 365
           FRQY
Sbjct: 310 FRQY 313

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BLAST of Cucsa.105920 vs. TrEMBL
Match: V7AQJ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G161700g PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.6e-116
Identity = 217/287 (75.61%), Postives = 242/287 (84.32%), Query Frame = 1 

Query: 79  FLHRFTPTFSSLPFPRPYGVLLDPVYLALKPWRLPDFALEYTRSDPKAGVPIYKPKTYEV 138
           FL +   +FSS P P+           +L+  R      E   SDPKAGV IYKPK+Y+V
Sbjct: 15  FLRQCQFSFSSSPLPQTLPRSFTAKIHSLRLGR------EGAPSDPKAGVSIYKPKSYQV 74

Query: 139 LVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFIDANIQLALAVARNLQEKR 198
           LV+DAANSLA+AL+DGK+RLEIDFPPLPSNISSYKGSSDDFIDANIQLALAV R LQEK+
Sbjct: 75  LVTDAANSLAFALQDGKIRLEIDFPPLPSNISSYKGSSDDFIDANIQLALAVVRKLQEKK 134

Query: 199 GIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGAVTSFFRSVRNTLDFDFE 258
             R+CIVFPDKPEKRRAS+LFKTALDSIDGIT+ SLDDVPAG +TSFFRSVRNTLDFDFE
Sbjct: 135 ETRACIVFPDKPEKRRASELFKTALDSIDGITIGSLDDVPAGPMTSFFRSVRNTLDFDFE 194

Query: 259 DDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPALLFNLELETLRADLGLLG 318
           D+N GRW SS+PPS+YIF+NCSTRELG IEKYVE  A+S P LLFNLEL+TLRADLGL G
Sbjct: 195 DENEGRWQSSEPPSIYIFLNCSTRELGYIEKYVEKIATSTPTLLFNLELDTLRADLGLPG 254

Query: 319 FPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALFRQYP 366
           FP KDLHYRFLSQF PVFYIRIR+YSKTVA+APYIVNYSGA+FRQYP
Sbjct: 255 FPAKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPYIVNYSGAVFRQYP 295

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BLAST of Cucsa.105920 vs. TrEMBL
Match: I1KVM9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G219200 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115
Identity = 208/244 (85.25%), Postives = 224/244 (91.80%), Query Frame = 1 

Query: 122 SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFID 181
           SDPKAGV +YKPK+YEVLVSDAANSL+YAL+DGK+RLEIDFPPLPSNISSYKGSSD+FID
Sbjct: 64  SDPKAGVSLYKPKSYEVLVSDAANSLSYALQDGKLRLEIDFPPLPSNISSYKGSSDEFID 123

Query: 182 ANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGA 241
           ANIQLALAV R L+EK+  R+CIVFPDKPEKRRA QLFK ALDSIDGIT+ SLDDVP G 
Sbjct: 124 ANIQLALAVVRKLKEKKETRACIVFPDKPEKRRACQLFKAALDSIDGITIGSLDDVPTGP 183

Query: 242 VTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPAL 301
           +TSFFRSVRNTLDFDFEDDN GRW SS+PPSLYIFINCSTREL  IEKYVE FA+S P L
Sbjct: 184 MTSFFRSVRNTLDFDFEDDNEGRWQSSEPPSLYIFINCSTRELAYIEKYVEKFATSTPTL 243

Query: 302 LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALF 361
           LFNLEL+TLRADLGL GFP KDLHYRFLSQF PVFYIRIREYSKTVA+APYIVNYSGA+F
Sbjct: 244 LFNLELDTLRADLGLPGFPAKDLHYRFLSQFTPVFYIRIREYSKTVAIAPYIVNYSGAVF 303

Query: 362 RQYP 366
           RQYP
Sbjct: 304 RQYP 307

[Close]
BLAST of Cucsa.105920 vs. TrEMBL
Match: A0A0B2S1P5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007089 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115
Identity = 208/244 (85.25%), Postives = 224/244 (91.80%), Query Frame = 1 

Query: 122 SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFID 181
           SDPKAGV +YKPK+YEVLVSDAANSL+YAL+DGK+RLEIDFPPLPSNISSYKGSSD+FID
Sbjct: 64  SDPKAGVSLYKPKSYEVLVSDAANSLSYALQDGKLRLEIDFPPLPSNISSYKGSSDEFID 123

Query: 182 ANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGA 241
           ANIQLALAV R L+EK+  R+CIVFPDKPEKRRA QLFK ALDSIDGIT+ SLDDVP G 
Sbjct: 124 ANIQLALAVVRKLKEKKETRACIVFPDKPEKRRACQLFKAALDSIDGITIGSLDDVPTGP 183

Query: 242 VTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPAL 301
           +TSFFRSVRNTLDFDFEDDN GRW SS+PPSLYIFINCSTREL  IEKYVE FA+S P L
Sbjct: 184 MTSFFRSVRNTLDFDFEDDNEGRWQSSEPPSLYIFINCSTRELAYIEKYVEKFATSTPTL 243

Query: 302 LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALF 361
           LFNLEL+TLRADLGL GFP KDLHYRFLSQF PVFYIRIREYSKTVA+APYIVNYSGA+F
Sbjct: 244 LFNLELDTLRADLGLPGFPAKDLHYRFLSQFTPVFYIRIREYSKTVAIAPYIVNYSGAVF 303

Query: 362 RQYP 366
           RQYP
Sbjct: 304 RQYP 307

[Close]
BLAST of Cucsa.105920 vs. TrEMBL
Match: M5WSE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007199mg PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.3e-115
Identity = 205/254 (80.71%), Postives = 228/254 (89.76%), Query Frame = 1 

Query: 112 LPDFALEYTRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISS 171
           LP F L  +  DPK+GV +YKPK+YEVLV+DAA SLAYALEDGK RLEIDFPPLPSNISS
Sbjct: 51  LPKFPLNTSSLDPKSGVSVYKPKSYEVLVADAAKSLAYALEDGKTRLEIDFPPLPSNISS 110

Query: 172 YKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITV 231
           YKGSSDDFIDAN+QLALAV R L+EKR  R+CIVFPDKPEKRRAS+LFKTA+D++D IT+
Sbjct: 111 YKGSSDDFIDANVQLALAVVRKLKEKRETRACIVFPDKPEKRRASELFKTAIDTLDDITI 170

Query: 232 SSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYV 291
            SLDDVP G VT+FFRS+RNTLDFDFED+N GRW S++PPSLY+FINCSTR+L  IEKYV
Sbjct: 171 GSLDDVPGGPVTNFFRSIRNTLDFDFEDENEGRWASNEPPSLYVFINCSTRDLASIEKYV 230

Query: 292 ETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAP 351
           ETFA S P LLFNLEL+TLRADLGL+GFP KDLHYRFL QFIPVFYIRIREYSKTVAVAP
Sbjct: 231 ETFAMSTPTLLFNLELDTLRADLGLVGFPTKDLHYRFLCQFIPVFYIRIREYSKTVAVAP 290

Query: 352 YIVNYSGALFRQYP 366
           YIVNY+GALFRQYP
Sbjct: 291 YIVNYNGALFRQYP 304

[Close]
BLAST of Cucsa.105920 vs. TAIR10
Match: AT1G73060.1 (AT1G73060.1 Low PSII Accumulation 3)

HSP 1 Score: 404.8 bits (1039), Expect = 5.6e-113
Identity = 193/246 (78.46%), Postives = 220/246 (89.43%), Query Frame = 1 

Query: 120 TRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDF 179
           + SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K RLEIDFPPLPS+ISSYKGSSDDF
Sbjct: 39  SNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSSDDF 98

Query: 180 IDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA 239
           IDANIQLA+ V R LQEK   R+CIVFPDKPEKRRASQ FK A DS+DGI++ SLDD+P 
Sbjct: 99  IDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDDIPG 158

Query: 240 GAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIP 299
            +VT+FFRS+R+TLDFDFED+N G W   +PP+LYIFINCSTREL  IEK+VETFASS P
Sbjct: 159 TSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFASSTP 218

Query: 300 ALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGA 359
           ALLFNLEL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSKTVAVAP+++NY+GA
Sbjct: 219 ALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGA 278

Query: 360 LFRQYP 366
           LFRQYP
Sbjct: 279 LFRQYP 284

[Close]
BLAST of Cucsa.105920 vs. NCBI nr
Match: gi|449436191|ref|XP_004135877.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 485.0 bits (1247), Expect = 1.2e-133
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

Query: 121 RSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFI 180
           RSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFI
Sbjct: 70  RSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFI 129

Query: 181 DANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG 240
           DANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG
Sbjct: 130 DANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAG 189

Query: 241 AVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPA 300
           AVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPA
Sbjct: 190 AVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPA 249

Query: 301 LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGAL 360
           LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGAL
Sbjct: 250 LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGAL 309

Query: 361 FRQY 365
           FRQY
Sbjct: 310 FRQY 313

[Close]
BLAST of Cucsa.105920 vs. NCBI nr
Match: gi|659122509|ref|XP_008461181.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis melo])

HSP 1 Score: 476.9 bits (1226), Expect = 3.3e-131
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 1 

Query: 122 SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFID 181
           SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSD+FID
Sbjct: 71  SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFID 130

Query: 182 ANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGA 241
           ANIQLALAVARNLQEKRG RSCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDDVPAG 
Sbjct: 131 ANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDGITVSSLDDVPAGP 190

Query: 242 VTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPAL 301
           VTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIP L
Sbjct: 191 VTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPTL 250

Query: 302 LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALF 361
           LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALF
Sbjct: 251 LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALF 310

Query: 362 RQYP 366
           RQYP
Sbjct: 311 RQYP 314

[Close]
BLAST of Cucsa.105920 vs. NCBI nr
Match: gi|593267304|ref|XP_007135830.1| (hypothetical protein PHAVU_010G161700g [Phaseolus vulgaris])

HSP 1 Score: 427.6 bits (1098), Expect = 2.3e-116
Identity = 217/287 (75.61%), Postives = 242/287 (84.32%), Query Frame = 1 

Query: 79  FLHRFTPTFSSLPFPRPYGVLLDPVYLALKPWRLPDFALEYTRSDPKAGVPIYKPKTYEV 138
           FL +   +FSS P P+           +L+  R      E   SDPKAGV IYKPK+Y+V
Sbjct: 15  FLRQCQFSFSSSPLPQTLPRSFTAKIHSLRLGR------EGAPSDPKAGVSIYKPKSYQV 74

Query: 139 LVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFIDANIQLALAVARNLQEKR 198
           LV+DAANSLA+AL+DGK+RLEIDFPPLPSNISSYKGSSDDFIDANIQLALAV R LQEK+
Sbjct: 75  LVTDAANSLAFALQDGKIRLEIDFPPLPSNISSYKGSSDDFIDANIQLALAVVRKLQEKK 134

Query: 199 GIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGAVTSFFRSVRNTLDFDFE 258
             R+CIVFPDKPEKRRAS+LFKTALDSIDGIT+ SLDDVPAG +TSFFRSVRNTLDFDFE
Sbjct: 135 ETRACIVFPDKPEKRRASELFKTALDSIDGITIGSLDDVPAGPMTSFFRSVRNTLDFDFE 194

Query: 259 DDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPALLFNLELETLRADLGLLG 318
           D+N GRW SS+PPS+YIF+NCSTRELG IEKYVE  A+S P LLFNLEL+TLRADLGL G
Sbjct: 195 DENEGRWQSSEPPSIYIFLNCSTRELGYIEKYVEKIATSTPTLLFNLELDTLRADLGLPG 254

Query: 319 FPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALFRQYP 366
           FP KDLHYRFLSQF PVFYIRIR+YSKTVA+APYIVNYSGA+FRQYP
Sbjct: 255 FPAKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPYIVNYSGAVFRQYP 295

[Close]
BLAST of Cucsa.105920 vs. NCBI nr
Match: gi|951036463|ref|XP_014516619.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 424.9 bits (1091), Expect = 1.5e-115
Identity = 212/264 (80.30%), Postives = 233/264 (88.26%), Query Frame = 1 

Query: 102 PVYLALKPWRLPDFALEYTRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEID 161
           P+ LA K   L     E   SDPKAGV +YKPK+Y+VLV+DAANSLA+AL+DGK+RLEID
Sbjct: 41  PLRLAAKIHSL-GIGREGAPSDPKAGVSLYKPKSYQVLVNDAANSLAFALQDGKIRLEID 100

Query: 162 FPPLPSNISSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKT 221
           FPPLP+N+SSYKGSSD+FIDANIQLALAV R LQEK+  R+CIVFPDKPEKRRASQLFKT
Sbjct: 101 FPPLPTNVSSYKGSSDEFIDANIQLALAVVRKLQEKQETRACIVFPDKPEKRRASQLFKT 160

Query: 222 ALDSIDGITVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCST 281
           ALDSIDGIT+ SLDDVPAG +TSFFRSVRNTLDFDFEDDN GRW SSDPPS+YIF+NCST
Sbjct: 161 ALDSIDGITIGSLDDVPAGPMTSFFRSVRNTLDFDFEDDNEGRWQSSDPPSIYIFLNCST 220

Query: 282 RELGLIEKYVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIR 341
           REL  IEKYVE  A+S P LLFNLEL+TLRADLGL GFP KDLHYRFLSQF PVFYIRIR
Sbjct: 221 RELAYIEKYVEKIATSTPTLLFNLELDTLRADLGLPGFPAKDLHYRFLSQFTPVFYIRIR 280

Query: 342 EYSKTVAVAPYIVNYSGALFRQYP 366
           EYSKTVA+APYIVNYSGA+FRQYP
Sbjct: 281 EYSKTVAIAPYIVNYSGAVFRQYP 303

[Close]
BLAST of Cucsa.105920 vs. NCBI nr
Match: gi|734416119|gb|KHN38047.1| (hypothetical protein glysoja_007089 [Glycine soja])

HSP 1 Score: 424.9 bits (1091), Expect = 1.5e-115
Identity = 208/244 (85.25%), Postives = 224/244 (91.80%), Query Frame = 1 

Query: 122 SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDDFID 181
           SDPKAGV +YKPK+YEVLVSDAANSL+YAL+DGK+RLEIDFPPLPSNISSYKGSSD+FID
Sbjct: 64  SDPKAGVSLYKPKSYEVLVSDAANSLSYALQDGKLRLEIDFPPLPSNISSYKGSSDEFID 123

Query: 182 ANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGA 241
           ANIQLALAV R L+EK+  R+CIVFPDKPEKRRA QLFK ALDSIDGIT+ SLDDVP G 
Sbjct: 124 ANIQLALAVVRKLKEKKETRACIVFPDKPEKRRACQLFKAALDSIDGITIGSLDDVPTGP 183

Query: 242 VTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPAL 301
           +TSFFRSVRNTLDFDFEDDN GRW SS+PPSLYIFINCSTREL  IEKYVE FA+S P L
Sbjct: 184 MTSFFRSVRNTLDFDFEDDNEGRWQSSEPPSLYIFINCSTRELAYIEKYVEKFATSTPTL 243

Query: 302 LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAPYIVNYSGALF 361
           LFNLEL+TLRADLGL GFP KDLHYRFLSQF PVFYIRIREYSKTVA+APYIVNYSGA+F
Sbjct: 244 LFNLELDTLRADLGLPGFPAKDLHYRFLSQFTPVFYIRIREYSKTVAIAPYIVNYSGAVF 303

Query: 362 RQYP 366
           RQYP
Sbjct: 304 RQYP 307

The following BLAST results are available for this feature:
BLAST of Cucsa.105920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LPA3_ARATH9.9e-11278.46Protein LOW PSII ACCUMULATION 3, chloroplastic OS=Arabidopsis thaliana GN=LPA3 P... [more]
BLAST of Cucsa.105920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA03_CUCSA8.4e-134100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431980 PE=4 SV=1[more]
V7AQJ4_PHAVU1.6e-11675.61Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G161700g PE=4 SV=1[more]
I1KVM9_SOYBN1.0e-11585.25Uncharacterized protein OS=Glycine max GN=GLYMA_08G219200 PE=4 SV=1[more]
A0A0B2S1P5_GLYSO1.0e-11585.25Uncharacterized protein OS=Glycine soja GN=glysoja_007089 PE=4 SV=1[more]
M5WSE7_PRUPE1.3e-11580.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007199mg PE=4 SV=1[more]
BLAST of Cucsa.105920 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73060.15.6e-11378.46 Low PSII Accumulation 3[more]
BLAST of Cucsa.105920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436191|ref|XP_004135877.1|1.2e-133100.00PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus][more]
gi|659122509|ref|XP_008461181.1|3.3e-13197.54PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis melo][more]
gi|593267304|ref|XP_007135830.1|2.3e-11675.61hypothetical protein PHAVU_010G161700g [Phaseolus vulgaris][more]
gi|951036463|ref|XP_014516619.1|1.5e-11580.30PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Vigna radiata var. ra... [more]
gi|734416119|gb|KHN38047.1|1.5e-11585.25hypothetical protein glysoja_007089 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018962DUF1995
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009735 response to cytokinin
biological_process GO:0008150 biological_process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009571 proplastid stroma
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.105920.1Cucsa.105920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018962Domain of unknown function DUF1995PFAMPF09353DUF1995coord: 133..366
score: 1.9
NoneNo IPR availablePANTHERPTHR34051FAMILY NOT NAMEDcoord: 120..365
score: 6.6E
NoneNo IPR availablePANTHERPTHR34051:SF2PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTICcoord: 120..365
score: 6.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.105920Cla015321Watermelon (97103) v1cgywmB142
Cucsa.105920Csa7G431980Cucumber (Chinese Long) v2cgycuB126
Cucsa.105920MELO3C023469Melon (DHL92) v3.5.1cgymeB133
Cucsa.105920ClCG09G003350Watermelon (Charleston Gray)cgywcgB141
Cucsa.105920CSPI07G20100Wild cucumber (PI 183967)cgycpiB127
Cucsa.105920CmaCh17G008980Cucurbita maxima (Rimu)cgycmaB0237
Cucsa.105920CmoCh17G008670Cucurbita moschata (Rifu)cgycmoB0236
Cucsa.105920Cp4.1LG12g07270Cucurbita pepo (Zucchini)cgycpeB0229
Cucsa.105920MELO3C023469.2Melon (DHL92) v3.6.1cgymedB133
Cucsa.105920CsaV3_7G031880Cucumber (Chinese Long) v3cgycucB131
Cucsa.105920Cla97C09G165580Watermelon (97103) v2cgywmbB141
Cucsa.105920Bhi09G000435Wax gourdcgywgoB161
Cucsa.105920Carg18734Silver-seed gourdcarcgyB0414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.105920Cucumber (Gy14) v1cgycgyB054
Cucsa.105920Cucurbita maxima (Rimu)cgycmaB0238
Cucsa.105920Cucurbita maxima (Rimu)cgycmaB0241
Cucsa.105920Cucurbita moschata (Rifu)cgycmoB0238
Cucsa.105920Cucurbita moschata (Rifu)cgycmoB0240
Cucsa.105920Wild cucumber (PI 183967)cgycpiB126
Cucsa.105920Cucumber (Chinese Long) v2cgycuB125
Cucsa.105920Melon (DHL92) v3.5.1cgymeB134
Cucsa.105920Watermelon (Charleston Gray)cgywcgB143
Cucsa.105920Watermelon (97103) v1cgywmB144
Cucsa.105920Cucurbita pepo (Zucchini)cgycpeB0230
Cucsa.105920Bottle gourd (USVL1VR-Ls)cgylsiB133
Cucsa.105920Melon (DHL92) v3.6.1cgymedB134
Cucsa.105920Silver-seed gourdcarcgyB0520