Cucsa.105750.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.105750.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Pentatricopeptide repeat-containing family protein
Location	scaffold00929 : 270222 .. 271199 (-)
Sequence length	978

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTATGCGTTGGCTCATTTGGTTAGTGAAGCGATTGCTGCTTATGAGAGATTACGGGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTTATTGATGCACTTTGTGAGTCTAGACATGTCGATGAAGCGCAAGAACTGTGTTTTGGGAAGAATAGGAAGTTGGATTGTGATTCGAGTACGAAGATTCATAACTTAATTCTTCGTGGTTGGCTTAAGATGGGATGGTGGAGTAAATGTAGAGACTTTTGGGAAGAAATGGATAAGAAGGGCGTTCGTAAGGATTTACATTCGTATTCGATATATATGGATATACAGTGCAAGAGTGGGAAACCTTGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTGGCCTATAATACGGTGATTCATGCTGTTGGGATTTCGGAAGGTGTCGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTGTTATTAAGCTGTTTTGTGAGAATGGAAGATTCAAGGATGCCCACATGATGCTCGACCAAATGCTTAAGAGGGACTGTCAACCTAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCCGAAAGAGATTCTCGTGTTATTTGATAGGATGATTAAATATGGGGTTCATCCAAAAATGGATACCTATGTGATGCTCTTGAGGAAGTTTGGAAGATGGGGGTTTCTAAGACCAGTGTTTTTAGTGTGGAATAAGATGGAGGAACTTGGGTGTAGCCCGAATGAGTGTGCTTACAATGCTTTAATTGATGCTCTTGTGGAGAAGGGAATGATAGATATGGCTAGAAAGTATGACGAAGAGATGGTAGCGAAAGGTCTTTCACCTAAGCTGAGAGTGGAATTGGGGACACAGATGATGAATGGTGGCTATCATGCCAATGTGAACTGCAACAAGTAG

mRNA sequence

CGTTATGCGTTGGCTCATTTGGTTAGTGAAGCGATTGCTGCTTATGAGAGATTACGGGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTTATTGATGCACTTTGTGAGTCTAGACATGTCGATGAAGCGCAAGAACTGTGTTTTGGGAAGAATAGGAAGTTGGATTGTGATTCGAGTACGAAGATTCATAACTTAATTCTTCGTGGTTGGCTTAAGATGGGATGGTGGAGTAAATGTAGAGACTTTTGGGAAGAAATGGATAAGAAGGGCGTTCGTAAGGATTTACATTCGTATTCGATATATATGGATATACAGTGCAAGAGTGGGAAACCTTGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTGGCCTATAATACGGTGATTCATGCTGTTGGGATTTCGGAAGGTGTCGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTGTTATTAAGCTGTTTTGTGAGAATGGAAGATTCAAGGATGCCCACATGATGCTCGACCAAATGCTTAAGAGGGACTGTCAACCTAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCCGAAAGAGATTCTCGTGTTATTTGATAGGATGATTAAATATGGGGTTCATCCAAAAATGGATACCTATGTGATGCTCTTGAGGAAGTTTGGAAGATGGGGGTTTCTAAGACCAGTGTTTTTAGTGTGGAATAAGATGGAGGAACTTGGGTGTAGCCCGAATGAGTGTGCTTACAATGCTTTAATTGATGCTCTTGTGGAGAAGGGAATGATAGATATGGCTAGAAAGTATGACGAAGAGATGGTAGCGAAAGGTCTTTCACCTAAGCTGAGAGTGGAATTGGGGACACAGATGATGAATGGTGGCTATCATGCCAATGTGAACTGCAACAAGTAG

Coding sequence (CDS)

CGTTATGCGTTGGCTCATTTGGTTAGTGAAGCGATTGCTGCTTATGAGAGATTACGGGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTTATTGATGCACTTTGTGAGTCTAGACATGTCGATGAAGCGCAAGAACTGTGTTTTGGGAAGAATAGGAAGTTGGATTGTGATTCGAGTACGAAGATTCATAACTTAATTCTTCGTGGTTGGCTTAAGATGGGATGGTGGAGTAAATGTAGAGACTTTTGGGAAGAAATGGATAAGAAGGGCGTTCGTAAGGATTTACATTCGTATTCGATATATATGGATATACAGTGCAAGAGTGGGAAACCTTGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTGGCCTATAATACGGTGATTCATGCTGTTGGGATTTCGGAAGGTGTCGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTGTTATTAAGCTGTTTTGTGAGAATGGAAGATTCAAGGATGCCCACATGATGCTCGACCAAATGCTTAAGAGGGACTGTCAACCTAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCCGAAAGAGATTCTCGTGTTATTTGATAGGATGATTAAATATGGGGTTCATCCAAAAATGGATACCTATGTGATGCTCTTGAGGAAGTTTGGAAGATGGGGGTTTCTAAGACCAGTGTTTTTAGTGTGGAATAAGATGGAGGAACTTGGGTGTAGCCCGAATGAGTGTGCTTACAATGCTTTAATTGATGCTCTTGTGGAGAAGGGAATGATAGATATGGCTAGAAAGTATGACGAAGAGATGGTAGCGAAAGGTCTTTCACCTAAGCTGAGAGTGGAATTGGGGACACAGATGATGAATGGTGGCTATCATGCCAATGTGAACTGCAACAAGTAG

Protein sequence

RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLRVELGTQMMNGGYHANVNCNK*

Homology

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BLAST of Cucsa.105750.1 vs. Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.1e-122
Identity = 209/310 (67.42%), Postives = 251/310 (80.97%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLD--C 60
           RY  AHLV EAI AY++L +F LRDETSF NL+DALCE +HV EA+ELCFGKN   +   
Sbjct: 126 RYVTAHLVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFS 185

Query: 61  DSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            S+TKIHNLILRGW K+GWW KC+++W++MD +GV KDL SYSIYMDI CKSGKPWKAVK
Sbjct: 186 VSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVK 245

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMK + MKLDVVAYNTVI A+G S+GV+F  RVF EM+E GC+PNV T NT+IKL C
Sbjct: 246 LYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLC 305

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           E+GR +DA+ MLD+M KR CQP+ ITY C F  LEKP EIL LF RMI+ GV PKMDTYV
Sbjct: 306 EDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYV 365

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKF RWGFL+PV  VW  M+E G +P+  AYNA+IDAL++KGM+DMAR+Y+EEM+ +
Sbjct: 366 MLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIER 425

Query: 301 GLSPKLRVEL 309
           GLSP+ R EL
Sbjct: 426 GLSPRRRPEL 435

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BLAST of Cucsa.105750.1 vs. Swiss-Prot
Match: PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-43
Identity = 107/310 (34.52%), Postives = 163/310 (52.58%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLR-DETSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           +Y   H V +AI  +   + FKL      F +L+ ALC  ++V +A  L F    K   D
Sbjct: 206 KYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFD 265

Query: 61  SSTKIHNLILRGWLKM-GWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
           +  K  N++L GW  + G   +    W EM   GV+ D+ SYS  +    K G   K +K
Sbjct: 266 A--KSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLK 325

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKE-MGCKPNVVTCNTVIKLF 180
           L+  MKK+ ++ D   YN V+HA+  +  V  A  +   M+E  G +PNVVT N++IK  
Sbjct: 326 LFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPL 385

Query: 181 CENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTY 240
           C+  + ++A  + D+ML++   P + TYH F R L   +E+  L  +M K G  P ++TY
Sbjct: 386 CKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETY 445

Query: 241 VMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVA 300
           +ML+RK  RW     V L+W++M+E    P+  +Y  +I  L   G I+ A  Y +EM  
Sbjct: 446 IMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKD 505

Query: 301 KGLSPKLRVE 308
           KG+ P   VE
Sbjct: 506 KGMRPNENVE 513

HSP 2 Score: 40.8 bits (94), Expect = 3.3e-02
Identity = 51/245 (20.82%), Postives = 96/245 (39.18%), Query Frame = 1


Query: 79  SKCRDFWEEM--------DKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKL 138
           S+ R+ WE           ++G  + +  Y   + I  K  K   A  L  EM+K    L
Sbjct: 135 SRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSL 194

Query: 139 D-------VVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRF 198
                   ++     +H VG       A   FH  K    +  +    +++   C     
Sbjct: 195 VNSQTLLIMIRKYCAVHDVGK------AINTFHAYKRFKLEMGIDDFQSLLSALCRYKNV 254

Query: 199 KDA-HMMLDQMLKR--DCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 258
            DA H++     K   D +   I  + +   +  P+E   ++  M   GV   + +Y  +
Sbjct: 255 SDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSM 314

Query: 259 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEM-VAKG 305
           +  + + G L  V  ++++M++    P+   YNA++ AL +   +  AR   + M   KG
Sbjct: 315 ISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKG 373

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BLAST of Cucsa.105750.1 vs. Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-41
Identity = 100/311 (32.15%), Postives = 164/311 (52.73%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDE-TSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           RYA AH V EA+  +ER +EF + D+  +F  L+  LC  +HV+ A+ L   + R+  CD
Sbjct: 187 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD 246

Query: 61  SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKL 120
              K  N+IL GW  +G   + + FW+++     R D+ SY   ++   K GK  KA++L
Sbjct: 247 --IKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMEL 306

Query: 121 YKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCE 180
           Y+ M       DV   N VI A+   + +  A  VF E+ E G  PNVVT N+++K  C+
Sbjct: 307 YRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCK 366

Query: 181 NGRFKDAHMMLDQMLKR--DCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTY 240
             R +    ++++M  +   C PN +T+    +  ++ K++ ++ +RM K       D Y
Sbjct: 367 IRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLY 426

Query: 241 VMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVA 300
            ++ R + +W     V  +W++ME  G  P++  Y   I  L  KG I  A  Y +EM++
Sbjct: 427 NLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMS 486

Query: 301 KGLSPKLRVEL 309
           KG+ P+ R E+
Sbjct: 487 KGMVPEPRTEM 495

[Close]

BLAST of Cucsa.105750.1 vs. Swiss-Prot
Match: PP125_ARATH (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-34
Identity = 97/310 (31.29%), Postives = 157/310 (50.65%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFK-LRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           RYA A    +A+  +  + E    +D  SF  ++D LC+S+ V++A EL      +   D
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVD 194

Query: 61  SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKL 120
           + T  +N+IL GW  +    K  +  +EM ++G+  +L +Y+  +    ++G+   A + 
Sbjct: 195 TVT--YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEF 254

Query: 121 YKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCE 180
           + EMKK+  ++DVV Y TV+H  G++  +  A  VF EM   G  P+V T N +I++ C+
Sbjct: 255 FLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCK 314

Query: 181 NGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEIL---VLFDRMIKYGVHPKMDT 240
               ++A +M ++M++R  +PNV TY+   R L    E      L  RM   G  P   T
Sbjct: 315 KDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQT 374

Query: 241 YVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDAL-VEKGMIDM--ARKYDE 300
           Y M++R +     +     ++ KM    C PN   YN LI  + V K   DM  A K   
Sbjct: 375 YNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLL 434

Query: 301 EMVAKGLSPK 304
           EMV +G  P+
Sbjct: 435 EMVERGFIPR 442

HSP 2 Score: 105.9 bits (263), Expect = 8.4e-22
Identity = 77/290 (26.55%), Postives = 132/290 (45.52%), Query Frame = 1


Query: 19  REFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWW 78
           RE+ + D +SF   ID +    H+         + R L    S K   ++   +   G  
Sbjct: 85  REY-VHDASSFDLAID-IAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKP 144

Query: 79  SKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTV 138
            K    +  M + G  +DL S++  +D+ CKS +  KA +L++ ++ +   +D V YN +
Sbjct: 145 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVI 204

Query: 139 IHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDC 198
           ++   + +    A  V  EM E G  PN+ T NT++K F   G+ + A     +M KRDC
Sbjct: 205 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 264

Query: 199 QPNVITYHCF---FRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFL 258
           + +V+TY      F    + K    +FD MI+ GV P + TY  +++   +   +    +
Sbjct: 265 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 324

Query: 259 VWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR 306
           ++ +M   G  PN   YN LI  L   G      +  + M  +G  P  +
Sbjct: 325 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQ 371

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BLAST of Cucsa.105750.1 vs. Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 4.4e-31
Identity = 91/306 (29.74%), Postives = 151/306 (49.35%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDE-TSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           +YA A  V EAI A+  + ++ L     +F  L+ ALC+S++V +AQE+      +   D
Sbjct: 177 KYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPD 236

Query: 61  SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKL 120
           S T  ++++L GW K     K R+ + EM   G   D+ +YSI +DI CK+G+  +A+ +
Sbjct: 237 SKT--YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGI 296

Query: 121 YKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCE 180
            + M     K     Y+ ++H  G    ++ A   F EM+  G K +V   N++I  FC+
Sbjct: 297 VRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCK 356

Query: 181 NGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSL---EKPKEILVLFDRMIKYGVHPKMDT 240
             R K+ + +L +M  +   PN  + +   R L    +  E   +F +MIK    P  DT
Sbjct: 357 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADT 416

Query: 241 YVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMV 300
           Y M+++ F     +     VW  M + G  P+   ++ LI+ L E+     A    EEM+
Sbjct: 417 YTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI 476

Query: 301 AKGLSP 303
             G+ P
Sbjct: 477 EMGIRP 479

[Close]

BLAST of Cucsa.105750.1 vs. TrEMBL
Match: A0A0A0KBR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432170 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 1.9e-193
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS 60
           RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS
Sbjct: 126 RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS 185

Query: 61  STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY 120
           STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY
Sbjct: 186 STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY 245

Query: 121 KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN 180
           KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN
Sbjct: 246 KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN 305

Query: 181 GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 240
           GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML
Sbjct: 306 GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 365

Query: 241 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL 300
           LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL
Sbjct: 366 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL 425

Query: 301 SPKLRVELGTQMMNGGYHANVNCNK 326
           SPKLRVELGTQMMNGGYHANVNCNK
Sbjct: 426 SPKLRVELGTQMMNGGYHANVNCNK 450

[Close]

BLAST of Cucsa.105750.1 vs. TrEMBL
Match: A0A061G8S5_THECC (Pentatricopeptide repeat (PPR) superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_027343 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 2.0e-139
Identity = 237/318 (74.53%), Postives = 273/318 (85.85%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCF-GKNRKLDCD 60
           RY  AHLV EAI+ ++RL EF L+DE SFCNL+DALCE +HV EAQELCF GK +++   
Sbjct: 40  RYITAHLVKEAISTFDRLEEFNLKDEISFCNLVDALCEYKHVIEAQELCFFGKIKEIGLS 99

Query: 61  -SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            + TKIHN+ILRGW KMGWWSKCR+FW+EMDKKGV+KDLHSYSIYMDI CKSGKPWKAVK
Sbjct: 100 VNDTKIHNMILRGWFKMGWWSKCREFWQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVK 159

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMKKKGMKLDVVAYNTVI A+GISEG DF   VF EM+++GC+PNVVT NTVIKL C
Sbjct: 160 LYKEMKKKGMKLDVVAYNTVIRAIGISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLLC 219

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           ENGR + A+ +LDQMLK+DC P+VITYHCFF  LEKP+EIL LFD MI  G+ P+MDTYV
Sbjct: 220 ENGRVRQAYAVLDQMLKKDCAPDVITYHCFFGCLEKPREILKLFDLMITNGIQPRMDTYV 279

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKFGRWGFLRPVF+VW KMEELG SPNE AYNALIDAL++KGM+DMARKYDEEM+ K
Sbjct: 280 MLMRKFGRWGFLRPVFMVWKKMEELGSSPNEFAYNALIDALIQKGMLDMARKYDEEMLEK 339

Query: 301 GLSPKLRVELGTQMMNGG 317
           GLS K R ELGT+++ GG
Sbjct: 340 GLSSKPREELGTKLVQGG 357

[Close]

BLAST of Cucsa.105750.1 vs. TrEMBL
Match: A0A061G7W5_THECC (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_027343 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 2.0e-139
Identity = 237/318 (74.53%), Postives = 273/318 (85.85%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCF-GKNRKLDCD 60
           RY  AHLV EAI+ ++RL EF L+DE SFCNL+DALCE +HV EAQELCF GK +++   
Sbjct: 20  RYITAHLVKEAISTFDRLEEFNLKDEISFCNLVDALCEYKHVIEAQELCFFGKIKEIGLS 79

Query: 61  -SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            + TKIHN+ILRGW KMGWWSKCR+FW+EMDKKGV+KDLHSYSIYMDI CKSGKPWKAVK
Sbjct: 80  VNDTKIHNMILRGWFKMGWWSKCREFWQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVK 139

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMKKKGMKLDVVAYNTVI A+GISEG DF   VF EM+++GC+PNVVT NTVIKL C
Sbjct: 140 LYKEMKKKGMKLDVVAYNTVIRAIGISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLLC 199

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           ENGR + A+ +LDQMLK+DC P+VITYHCFF  LEKP+EIL LFD MI  G+ P+MDTYV
Sbjct: 200 ENGRVRQAYAVLDQMLKKDCAPDVITYHCFFGCLEKPREILKLFDLMITNGIQPRMDTYV 259

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKFGRWGFLRPVF+VW KMEELG SPNE AYNALIDAL++KGM+DMARKYDEEM+ K
Sbjct: 260 MLMRKFGRWGFLRPVFMVWKKMEELGSSPNEFAYNALIDALIQKGMLDMARKYDEEMLEK 319

Query: 301 GLSPKLRVELGTQMMNGG 317
           GLS K R ELGT+++ GG
Sbjct: 320 GLSSKPREELGTKLVQGG 337

[Close]

BLAST of Cucsa.105750.1 vs. TrEMBL
Match: A0A067DFS1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041804mg PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 4.5e-139
Identity = 233/321 (72.59%), Postives = 275/321 (85.67%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCD- 60
           RY  AHLV+EA+  + +L EF L+DE S+CNL+DALCE +HV EAQELCFG+N+ +    
Sbjct: 76  RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSG 135

Query: 61  ----SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWK 120
               + TKI+N+ILRGW KM WW KCR+FWEEMDK+GV KDLHSYSIYMDI CKSGKPWK
Sbjct: 136 LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK 195

Query: 121 AVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIK 180
           AVKLYKEMKKKG+K+DVVAYNTVI AVG+SEGVDFA RV+ EM+EMGC+P+VVTCNTVIK
Sbjct: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255

Query: 181 LFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMD 240
           L CENGR ++A+ +L +M K+ C P+VITYHCFFR LEKP+EIL LFDRMI+ G+ PKMD
Sbjct: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMD 315

Query: 241 TYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEM 300
           TYVMLLRKFGRWGFLRPVF+VW KMEELGCSP+E AYNAL+DAL++KGM+DMARKYDEEM
Sbjct: 316 TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEM 375

Query: 301 VAKGLSPKLRVELGTQMMNGG 317
            AKGLS K R ELGT+++ GG
Sbjct: 376 FAKGLSAKPREELGTKLVQGG 396

[Close]

BLAST of Cucsa.105750.1 vs. TrEMBL
Match: A0A0D2UQZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G085200 PE=4 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 5.0e-138
Identity = 235/320 (73.44%), Postives = 274/320 (85.62%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCF-GKNRKLDCD 60
           RY  AHLV+EAIA ++RL EF L+D+ SFCNL+DALCE +HV EA ELCF G+++ L  +
Sbjct: 171 RYITAHLVNEAIATFDRLGEFNLKDDISFCNLVDALCEYKHVIEAHELCFFGRSKDLGFN 230

Query: 61  -SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            + TKIHN+ILRGW KMGWWSKCR+FWEEMDKKG++KDLHSYSIYMDI CK GKPWKAVK
Sbjct: 231 VNDTKIHNMILRGWFKMGWWSKCREFWEEMDKKGIKKDLHSYSIYMDIMCKCGKPWKAVK 290

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMKKKGMKLDVVAYNTVI A+G+S+G +F   VF EM+++GC+PNVVT NTVIKL  
Sbjct: 291 LYKEMKKKGMKLDVVAYNTVIRAIGVSDGAEFGVGVFREMRDLGCEPNVVTYNTVIKLLL 350

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           ENGR + A+ +LDQMLK DC P+VITYHCFF SLEKPKEIL LFD MI+ GV P+MDTYV
Sbjct: 351 ENGRVRQAYSVLDQMLKNDCAPDVITYHCFFGSLEKPKEILKLFDLMIRNGVQPRMDTYV 410

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKFGRWGFLRPVF+VW KMEELG SPNE AYNALIDAL+EKGM+DMARKYDEEM+AK
Sbjct: 411 MLMRKFGRWGFLRPVFMVWKKMEELGSSPNEFAYNALIDALIEKGMLDMARKYDEEMLAK 470

Query: 301 GLSPKLRVELGTQMMNGGYH 319
           G+S K R ELGT+++ G  H
Sbjct: 471 GISSKPREELGTKLLQGEPH 490

[Close]

BLAST of Cucsa.105750.1 vs. TAIR10
Match: AT1G80550.1 (AT1G80550.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 441.0 bits (1133), Expect = 6.2e-124
Identity = 209/310 (67.42%), Postives = 251/310 (80.97%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLD--C 60
           RY  AHLV EAI AY++L +F LRDETSF NL+DALCE +HV EA+ELCFGKN   +   
Sbjct: 126 RYVTAHLVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFS 185

Query: 61  DSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            S+TKIHNLILRGW K+GWW KC+++W++MD +GV KDL SYSIYMDI CKSGKPWKAVK
Sbjct: 186 VSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVK 245

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMK + MKLDVVAYNTVI A+G S+GV+F  RVF EM+E GC+PNV T NT+IKL C
Sbjct: 246 LYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLC 305

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           E+GR +DA+ MLD+M KR CQP+ ITY C F  LEKP EIL LF RMI+ GV PKMDTYV
Sbjct: 306 EDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYV 365

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKF RWGFL+PV  VW  M+E G +P+  AYNA+IDAL++KGM+DMAR+Y+EEM+ +
Sbjct: 366 MLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIER 425

Query: 301 GLSPKLRVEL 309
           GLSP+ R EL
Sbjct: 426 GLSPRRRPEL 435

[Close]

BLAST of Cucsa.105750.1 vs. TAIR10
Match: AT5G15010.1 (AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-44
Identity = 107/310 (34.52%), Postives = 163/310 (52.58%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLR-DETSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           +Y   H V +AI  +   + FKL      F +L+ ALC  ++V +A  L F    K   D
Sbjct: 206 KYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFD 265

Query: 61  SSTKIHNLILRGWLKM-GWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
           +  K  N++L GW  + G   +    W EM   GV+ D+ SYS  +    K G   K +K
Sbjct: 266 A--KSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLK 325

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKE-MGCKPNVVTCNTVIKLF 180
           L+  MKK+ ++ D   YN V+HA+  +  V  A  +   M+E  G +PNVVT N++IK  
Sbjct: 326 LFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPL 385

Query: 181 CENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTY 240
           C+  + ++A  + D+ML++   P + TYH F R L   +E+  L  +M K G  P ++TY
Sbjct: 386 CKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETY 445

Query: 241 VMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVA 300
           +ML+RK  RW     V L+W++M+E    P+  +Y  +I  L   G I+ A  Y +EM  
Sbjct: 446 IMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKD 505

Query: 301 KGLSPKLRVE 308
           KG+ P   VE
Sbjct: 506 KGMRPNENVE 513

HSP 2 Score: 40.8 bits (94), Expect = 1.9e-03
Identity = 51/245 (20.82%), Postives = 96/245 (39.18%), Query Frame = 1


Query: 79  SKCRDFWEEM--------DKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKL 138
           S+ R+ WE           ++G  + +  Y   + I  K  K   A  L  EM+K    L
Sbjct: 135 SRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSL 194

Query: 139 D-------VVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRF 198
                   ++     +H VG       A   FH  K    +  +    +++   C     
Sbjct: 195 VNSQTLLIMIRKYCAVHDVGK------AINTFHAYKRFKLEMGIDDFQSLLSALCRYKNV 254

Query: 199 KDA-HMMLDQMLKR--DCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 258
            DA H++     K   D +   I  + +   +  P+E   ++  M   GV   + +Y  +
Sbjct: 255 SDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSM 314

Query: 259 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEM-VAKG 305
           +  + + G L  V  ++++M++    P+   YNA++ AL +   +  AR   + M   KG
Sbjct: 315 ISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKG 373

[Close]

BLAST of Cucsa.105750.1 vs. TAIR10
Match: AT3G15200.1 (AT3G15200.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 171.4 bits (433), Expect = 9.2e-43
Identity = 100/311 (32.15%), Postives = 164/311 (52.73%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDE-TSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           RYA AH V EA+  +ER +EF + D+  +F  L+  LC  +HV+ A+ L   + R+  CD
Sbjct: 187 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD 246

Query: 61  SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKL 120
              K  N+IL GW  +G   + + FW+++     R D+ SY   ++   K GK  KA++L
Sbjct: 247 --IKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMEL 306

Query: 121 YKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCE 180
           Y+ M       DV   N VI A+   + +  A  VF E+ E G  PNVVT N+++K  C+
Sbjct: 307 YRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCK 366

Query: 181 NGRFKDAHMMLDQMLKR--DCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTY 240
             R +    ++++M  +   C PN +T+    +  ++ K++ ++ +RM K       D Y
Sbjct: 367 IRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLY 426

Query: 241 VMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVA 300
            ++ R + +W     V  +W++ME  G  P++  Y   I  L  KG I  A  Y +EM++
Sbjct: 427 NLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMS 486

Query: 301 KGLSPKLRVEL 309
           KG+ P+ R E+
Sbjct: 487 KGMVPEPRTEM 495

[Close]

BLAST of Cucsa.105750.1 vs. TAIR10
Match: AT1G74900.1 (AT1G74900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 5.4e-35
Identity = 92/303 (30.36%), Postives = 151/303 (49.83%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFK-LRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           RYA A    +A+  +  + E    +D  SF  ++D LC+S+ V++A EL      +   D
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVD 194

Query: 61  SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKL 120
           + T  +N+IL GW  +    K  +  +EM ++G+  +L +Y+  +    ++G+   A + 
Sbjct: 195 TVT--YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEF 254

Query: 121 YKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCE 180
           + EMKK+  ++DVV Y TV+H  G++  +  A  VF EM   G  P+V T N +I++ C+
Sbjct: 255 FLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCK 314

Query: 181 NGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEIL---VLFDRMIKYGVHPKMDT 240
               ++A +M ++M++R  +PNV TY+   R L    E      L  RM   G  P   T
Sbjct: 315 KDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQT 374

Query: 241 YVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMV 300
           Y M++R +     +     ++ KM    C PN   YN LI  +         RK  E+MV
Sbjct: 375 YNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGM-------FVRKRSEDMV 428

HSP 2 Score: 105.9 bits (263), Expect = 4.7e-23
Identity = 77/290 (26.55%), Postives = 132/290 (45.52%), Query Frame = 1


Query: 19  REFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWW 78
           RE+ + D +SF   ID +    H+         + R L    S K   ++   +   G  
Sbjct: 85  REY-VHDASSFDLAID-IAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKP 144

Query: 79  SKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTV 138
            K    +  M + G  +DL S++  +D+ CKS +  KA +L++ ++ +   +D V YN +
Sbjct: 145 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVI 204

Query: 139 IHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDC 198
           ++   + +    A  V  EM E G  PN+ T NT++K F   G+ + A     +M KRDC
Sbjct: 205 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 264

Query: 199 QPNVITYHCF---FRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFL 258
           + +V+TY      F    + K    +FD MI+ GV P + TY  +++   +   +    +
Sbjct: 265 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 324

Query: 259 VWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR 306
           ++ +M   G  PN   YN LI  L   G      +  + M  +G  P  +
Sbjct: 325 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQ 371

[Close]

BLAST of Cucsa.105750.1 vs. TAIR10
Match: AT1G77360.1 (AT1G77360.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-32
Identity = 91/306 (29.74%), Postives = 151/306 (49.35%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDE-TSFCNLIDALCESRHVDEAQELCFGKNRKLDCD 60
           +YA A  V EAI A+  + ++ L     +F  L+ ALC+S++V +AQE+      +   D
Sbjct: 177 KYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPD 236

Query: 61  SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKL 120
           S T  ++++L GW K     K R+ + EM   G   D+ +YSI +DI CK+G+  +A+ +
Sbjct: 237 SKT--YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGI 296

Query: 121 YKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCE 180
            + M     K     Y+ ++H  G    ++ A   F EM+  G K +V   N++I  FC+
Sbjct: 297 VRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCK 356

Query: 181 NGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSL---EKPKEILVLFDRMIKYGVHPKMDT 240
             R K+ + +L +M  +   PN  + +   R L    +  E   +F +MIK    P  DT
Sbjct: 357 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADT 416

Query: 241 YVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMV 300
           Y M+++ F     +     VW  M + G  P+   ++ LI+ L E+     A    EEM+
Sbjct: 417 YTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI 476

Query: 301 AKGLSP 303
             G+ P
Sbjct: 477 EMGIRP 479

[Close]

BLAST of Cucsa.105750.1 vs. NCBI nr
Match: gi|778728988|ref|XP_011659515.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis sativus])

HSP 1 Score: 682.9 bits (1761), Expect = 2.7e-193
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS 60
           RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS
Sbjct: 126 RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS 185

Query: 61  STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY 120
           STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY
Sbjct: 186 STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY 245

Query: 121 KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN 180
           KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN
Sbjct: 246 KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN 305

Query: 181 GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 240
           GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML
Sbjct: 306 GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 365

Query: 241 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL 300
           LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL
Sbjct: 366 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL 425

Query: 301 SPKLRVELGTQMMNGGYHANVNCNK 326
           SPKLRVELGTQMMNGGYHANVNCNK
Sbjct: 426 SPKLRVELGTQMMNGGYHANVNCNK 450

[Close]

BLAST of Cucsa.105750.1 vs. NCBI nr
Match: gi|659122453|ref|XP_008461152.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis melo])

HSP 1 Score: 673.7 bits (1737), Expect = 1.6e-190
Identity = 318/325 (97.85%), Postives = 324/325 (99.69%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS 60
           RYA AHLV+EAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNR+LDCDS
Sbjct: 126 RYAAAHLVTEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRRLDCDS 185

Query: 61  STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY 120
           STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY
Sbjct: 186 STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLY 245

Query: 121 KEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN 180
           KEMK+KGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN
Sbjct: 246 KEMKQKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCEN 305

Query: 181 GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVML 240
           GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEIL+LFDRMIKYGVHPKMDTYVML
Sbjct: 306 GRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILILFDRMIKYGVHPKMDTYVML 365

Query: 241 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL 300
           LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL
Sbjct: 366 LRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGL 425

Query: 301 SPKLRVELGTQMMNGGYHANVNCNK 326
           SPKLRVELGT+M+NGGYHANVNCNK
Sbjct: 426 SPKLRVELGTKMVNGGYHANVNCNK 450

[Close]

BLAST of Cucsa.105750.1 vs. NCBI nr
Match: gi|590615881|ref|XP_007023349.1| (Pentatricopeptide repeat (PPR) superfamily protein isoform 3 [Theobroma cacao])

HSP 1 Score: 503.4 bits (1295), Expect = 2.9e-139
Identity = 237/318 (74.53%), Postives = 273/318 (85.85%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCF-GKNRKLDCD 60
           RY  AHLV EAI+ ++RL EF L+DE SFCNL+DALCE +HV EAQELCF GK +++   
Sbjct: 40  RYITAHLVKEAISTFDRLEEFNLKDEISFCNLVDALCEYKHVIEAQELCFFGKIKEIGLS 99

Query: 61  -SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            + TKIHN+ILRGW KMGWWSKCR+FW+EMDKKGV+KDLHSYSIYMDI CKSGKPWKAVK
Sbjct: 100 VNDTKIHNMILRGWFKMGWWSKCREFWQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVK 159

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMKKKGMKLDVVAYNTVI A+GISEG DF   VF EM+++GC+PNVVT NTVIKL C
Sbjct: 160 LYKEMKKKGMKLDVVAYNTVIRAIGISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLLC 219

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           ENGR + A+ +LDQMLK+DC P+VITYHCFF  LEKP+EIL LFD MI  G+ P+MDTYV
Sbjct: 220 ENGRVRQAYAVLDQMLKKDCAPDVITYHCFFGCLEKPREILKLFDLMITNGIQPRMDTYV 279

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKFGRWGFLRPVF+VW KMEELG SPNE AYNALIDAL++KGM+DMARKYDEEM+ K
Sbjct: 280 MLMRKFGRWGFLRPVFMVWKKMEELGSSPNEFAYNALIDALIQKGMLDMARKYDEEMLEK 339

Query: 301 GLSPKLRVELGTQMMNGG 317
           GLS K R ELGT+++ GG
Sbjct: 340 GLSSKPREELGTKLVQGG 357

[Close]

BLAST of Cucsa.105750.1 vs. NCBI nr
Match: gi|590615877|ref|XP_007023348.1| (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 503.4 bits (1295), Expect = 2.9e-139
Identity = 237/318 (74.53%), Postives = 273/318 (85.85%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCF-GKNRKLDCD 60
           RY  AHLV EAI+ ++RL EF L+DE SFCNL+DALCE +HV EAQELCF GK +++   
Sbjct: 20  RYITAHLVKEAISTFDRLEEFNLKDEISFCNLVDALCEYKHVIEAQELCFFGKIKEIGLS 79

Query: 61  -SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVK 120
            + TKIHN+ILRGW KMGWWSKCR+FW+EMDKKGV+KDLHSYSIYMDI CKSGKPWKAVK
Sbjct: 80  VNDTKIHNMILRGWFKMGWWSKCREFWQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVK 139

Query: 121 LYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFC 180
           LYKEMKKKGMKLDVVAYNTVI A+GISEG DF   VF EM+++GC+PNVVT NTVIKL C
Sbjct: 140 LYKEMKKKGMKLDVVAYNTVIRAIGISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLLC 199

Query: 181 ENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYV 240
           ENGR + A+ +LDQMLK+DC P+VITYHCFF  LEKP+EIL LFD MI  G+ P+MDTYV
Sbjct: 200 ENGRVRQAYAVLDQMLKKDCAPDVITYHCFFGCLEKPREILKLFDLMITNGIQPRMDTYV 259

Query: 241 MLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAK 300
           ML+RKFGRWGFLRPVF+VW KMEELG SPNE AYNALIDAL++KGM+DMARKYDEEM+ K
Sbjct: 260 MLMRKFGRWGFLRPVFMVWKKMEELGSSPNEFAYNALIDALIQKGMLDMARKYDEEMLEK 319

Query: 301 GLSPKLRVELGTQMMNGG 317
           GLS K R ELGT+++ GG
Sbjct: 320 GLSSKPREELGTKLVQGG 337

[Close]

BLAST of Cucsa.105750.1 vs. NCBI nr
Match: gi|641822280|gb|KDO41814.1| (hypothetical protein CISIN_1g041804mg, partial [Citrus sinensis])

HSP 1 Score: 502.3 bits (1292), Expect = 6.4e-139
Identity = 233/321 (72.59%), Postives = 275/321 (85.67%), Query Frame = 1


Query: 1   RYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCD- 60
           RY  AHLV+EA+  + +L EF L+DE S+CNL+DALCE +HV EAQELCFG+N+ +    
Sbjct: 76  RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSG 135

Query: 61  ----SSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWK 120
               + TKI+N+ILRGW KM WW KCR+FWEEMDK+GV KDLHSYSIYMDI CKSGKPWK
Sbjct: 136 LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK 195

Query: 121 AVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIK 180
           AVKLYKEMKKKG+K+DVVAYNTVI AVG+SEGVDFA RV+ EM+EMGC+P+VVTCNTVIK
Sbjct: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255

Query: 181 LFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMD 240
           L CENGR ++A+ +L +M K+ C P+VITYHCFFR LEKP+EIL LFDRMI+ G+ PKMD
Sbjct: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMD 315

Query: 241 TYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEM 300
           TYVMLLRKFGRWGFLRPVF+VW KMEELGCSP+E AYNAL+DAL++KGM+DMARKYDEEM
Sbjct: 316 TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEM 375

Query: 301 VAKGLSPKLRVELGTQMMNGG 317
            AKGLS K R ELGT+++ GG
Sbjct: 376 FAKGLSAKPREELGTKLVQGG 396

The following BLAST results are available for this feature:

BLAST of Cucsa.105750.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP136_ARATH	1.1e-122	67.42	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop...	[more]
PP383_ARATH	3.0e-43	34.52	Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop...	[more]
PP233_ARATH	1.6e-41	32.15	Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis th...	[more]
PP125_ARATH	2.5e-34	31.29	Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop...	[more]
PP129_ARATH	4.4e-31	29.74	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]

BLAST of Cucsa.105750.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBR1_CUCSA	1.9e-193	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432170 PE=4 SV=1	[more]
A0A061G8S5_THECC	2.0e-139	74.53	Pentatricopeptide repeat (PPR) superfamily protein isoform 3 OS=Theobroma cacao ...	[more]
A0A061G7W5_THECC	2.0e-139	74.53	Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Theobroma cacao ...	[more]
A0A067DFS1_CITSI	4.5e-139	72.59	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041804mg PE=4 S...	[more]
A0A0D2UQZ2_GOSRA	5.0e-138	73.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G085200 PE=4 SV=1	[more]

BLAST of Cucsa.105750.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80550.1	6.2e-124	67.42	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15010.1	1.7e-44	34.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G15200.1	9.2e-43	32.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74900.1	5.4e-35	30.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77360.1	2.5e-32	29.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cucsa.105750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728988\|ref\|XP_011659515.1\|	2.7e-193	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial ...	[more]
gi\|659122453\|ref\|XP_008461152.1\|	1.6e-190	97.85	PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial ...	[more]
gi\|590615881\|ref\|XP_007023349.1\|	2.9e-139	74.53	Pentatricopeptide repeat (PPR) superfamily protein isoform 3 [Theobroma cacao]	[more]
gi\|590615877\|ref\|XP_007023348.1\|	2.9e-139	74.53	Pentatricopeptide repeat (PPR) superfamily protein isoform 2 [Theobroma cacao]	[more]
gi\|641822280\|gb\|KDO41814.1\|	6.4e-139	72.59	hypothetical protein CISIN_1g041804mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.105750	Cucsa.105750	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.105750.1	Cucsa.105750.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.105750.1.CDS.1	Cucsa.105750.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 28..48 score: 0.28coord: 66..93 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 165..212 score: 1.3E-15coord: 95..141 score: 1.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 221..280 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 99..132 score: 7.0E-5coord: 271..302 score: 2.9E-5coord: 133..167 score: 1.8E-5coord: 236..269 score: 4.4E-4coord: 64..95 score: 2.0E-4coord: 168..202 score: 7.2
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 268..302 score: 11.137coord: 96..130 score: 10.918coord: 166..200 score: 12.518coord: 25..60 score: 8.32coord: 131..165 score: 11.115coord: 233..267 score: 8.539coord: 61..95 score: 9
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 163..294 score: 7.8E-6coord: 9..126 score: 7.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..303 score: 6.7E
None	No IPR available	PANTHER	PTHR24015:SF812	SUBFAMILY NOT NAMED	coord: 1..303 score: 6.7E