Cucsa.105260.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.105260.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Biotin carboxyl carrier acetyl-CoA carboxylase
Location	scaffold00929 : 30395 .. 31892 (+)
Sequence length	873

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTGAAATGGGCAACCTGAACTCTTTCAACAAGCTCTTACTTTCTTCCACCAAACCTATATGCCTTTTGGATTTTCATGATGGTCTTCTCCTACAGAAATAGCGAATTTATTCAACTTAACCATGTCCTTTTGGGAATCCGAAACATACTTTTCAGTTGCTATATTGTATGCAGGTGGAAACCCTACTTACGAACGTATGTGATACATCTTCGATTGCAGAGTTTGAATTGAAAGTAAGTAGTATTGAACTATTTTTAACTATTTGAACCTTCATTGTTCTTTCTCCTATTGTTCTACAGAGAGAAGACTTTTGCTCTAACTTCTTTGTCTCAAATATTTTCCTCGTGCTATTAGCTCAGCGGATTCAACTTGCGGATGGTGAGGAGCTTAAAAAGCAAAAATTTACCTCTTCCCCCTGTTCCAGCTCCAGCTCCTGATATTCAAAATACAAGCTCTATACCATCAGATTCAAATGGATTGGTTAAAACAACATCGTTGGCTTTAGTCAAACCAGAACCTGTTTCTTCTTCTCCACGGGGGATCTCCAGATATGTAGAGAAAGCTAGAGATGGAGGCGTAACAATACTTTCATCTCCTAATGTAAGCAAACAACGTTTTGTTTATTTTCTCTTGATCACAGTTATGGATGGTAAGATAAGATTTGAATGCAGGTTGGGGTTTTCAGAAGGTCTCGAACCATAAAAGGCAAGCGTGCACCACCATCTTGTGCAGAGGTATGTTAAATCCATCCACCCTCTTAAAAGGAAAAAaGAAAAaGGAAAATACTTGAGACAGTTCATAAATTATAACGTGAAGCCAAAGCTTAACTGCATTCTTGGCTATTTCTGGTCTAATACATTATGTCTTCTCATGTGCTGTGCTTTTACCTTTTGACATGCTTATTTCCCTGATAAAATAAATAATGACCATCTACCAAACTTTACTAACATTGATTCACTAAACAGGACCAGGTAGTAAGGGAAGGTCAAGTTCTTTGTTACATTGAACAGTTAGGTGGCCAGATCCCTGTCAAGGTTCGAGTCTCAACTTTAAACTTCTATAGTCATTGTTCTCTGCTGTTTAGGTTGTGTATATGTTCACATAAAGCTCACTGTTCTTGCACATTTGTTTTTCTGTTCATTTTGCAGTCTGACACACCTGGAGAAATCTTGAAGATACTACGCAAGGACGGTGGTAATTTTTtCAATGTTCTTTTATTTTCCTTTCCTATTGTTTGAAGTTTCATGAATAATAGCTTAGCAATTCACCATTTTCATGACAGAGCCTGTTGGATATGGTGATGCTCTTATTGCTGTTCTGCCTTCATTTCCTGGAATAAAGAAGCTTCGGTAGTAGATCGTTTCCAAATCAAATCAATACTTTCTCAGATGTTTTATGCCTCTAGATTATTGTAATCAATCTCTTCAATTTATCTTTGCATGGAAATTATACTTGCAATTTCATCTCTCTCTCTCTCTCTTAATATTAACTGACA

mRNA sequence

AGTTTGAAATGGGCAACCTGAACTCTTTCAACAAGCTCTTACTTTCTTCCACCAAACCTATATGCCTTTTGGATTTTCATGATGGTCTTCTCCTACAGAAATAGCGAATTTATTCAACTTAACCATGTCCTTTTGGGAATCCGAAACATACTTTTCAGTTGCTATATTGTATGCAGGTGGAAACCCTACTTACGAACGTATGTGATACATCTTCGATTGCAGAGTTTGAATTGAAACTCAGCGGATTCAACTTGCGGATGGTGAGGAGCTTAAAAAGCAAAAATTTACCTCTTCCCCCTGTTCCAGCTCCAGCTCCTGATATTCAAAATACAAGCTCTATACCATCAGATTCAAATGGATTGGTTAAAACAACATCGTTGGCTTTAGTCAAACCAGAACCTGTTTCTTCTTCTCCACGGGGGATCTCCAGATATGTAGAGAAAGCTAGAGATGGAGGCGTAACAATACTTTCATCTCCTAATGTTGGGGTTTTCAGAAGGTCTCGAACCATAAAAGGCAAGCGTGCACCACCATCTTGTGCAGAGGACCAGGTAGTAAGGGAAGGTCAAGTTCTTTGTTACATTGAACAGTTAGGTGGCCAGATCCCTGTCAAGTCTGACACACCTGGAGAAATCTTGAAGATACTACGCAAGGACGGTGAGCCTGTTGGATATGGTGATGCTCTTATTGCTGTTCTGCCTTCATTTCCTGGAATAAAGAAGCTTCGGTAGTAGATCGTTTCCAAATCAAATCAATACTTTCTCAGATGTTTTATGCCTCTAGATTATTGTAATCAATCTCTTCAATTTATCTTTGCATGGAAATTATACTTGCAATTTCATCTCTCTCTCTCTCTCTTAATATTAACTGACA

Coding sequence (CDS)

ATGCAGGTGGAAACCCTACTTACGAACGTATGTGATACATCTTCGATTGCAGAGTTTGAATTGAAACTCAGCGGATTCAACTTGCGGATGGTGAGGAGCTTAAAAAGCAAAAATTTACCTCTTCCCCCTGTTCCAGCTCCAGCTCCTGATATTCAAAATACAAGCTCTATACCATCAGATTCAAATGGATTGGTTAAAACAACATCGTTGGCTTTAGTCAAACCAGAACCTGTTTCTTCTTCTCCACGGGGGATCTCCAGATATGTAGAGAAAGCTAGAGATGGAGGCGTAACAATACTTTCATCTCCTAATGTTGGGGTTTTCAGAAGGTCTCGAACCATAAAAGGCAAGCGTGCACCACCATCTTGTGCAGAGGACCAGGTAGTAAGGGAAGGTCAAGTTCTTTGTTACATTGAACAGTTAGGTGGCCAGATCCCTGTCAAGTCTGACACACCTGGAGAAATCTTGAAGATACTACGCAAGGACGGTGAGCCTGTTGGATATGGTGATGCTCTTATTGCTGTTCTGCCTTCATTTCCTGGAATAAAGAAGCTTCGGTAG

Protein sequence

MQVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDSNGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPPSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPGIKKLR*

Homology

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BLAST of Cucsa.105260.2 vs. Swiss-Prot
Match: BCCP_NOSS1 (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-09
Identity = 52/187 (27.81%), Postives = 85/187 (45.45%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           ++  LLT +  T  IAE  LK   F L + +++   N  +P V AP   +   S +PS  
Sbjct: 7   EIRQLLTTIAQTD-IAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVG-SGLPS-- 66

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVE--------KARDGGVTILSSPNVGVFRRSRT 121
              +   + A   P P   + R     V         K  D  +  ++SP VG F R+  
Sbjct: 67  --AIPIVAHAAPSPSPEPGTSRAADHAVTSSGSQPGAKIIDQKLAEVASPMVGTFYRAP- 126

Query: 122 IKGKRAPPSCAEDQV---VREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGD 178
                AP      +V   +R+GQ +C IE +     +++D  G++++IL ++GEPV Y  
Sbjct: 127 -----APGEAVFVEVGDRIRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEYNQ 181

[Close]

BLAST of Cucsa.105260.2 vs. Swiss-Prot
Match: BCCP1_ARATH (Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 7.5e-07
Identity = 49/173 (28.32%), Postives = 75/173 (43.35%), Query Frame = 1


Query: 5   TLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDSNGL 64
           T L  + D+  I E +LK     L ++R  K + LP P  PA    +Q  +  PS +  +
Sbjct: 116 TTLVKLVDSRDIVELQLKQLDCEL-VIR--KKEALPQPQAPASYVMMQQPNQ-PSYAQQM 175

Query: 65  VKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPPSCA 124
               + A   P P + +          A+    T+  SP  G F RS        PP   
Sbjct: 176 APPAAPAAAAPAPSTPASLPPPSPPTPAKSSLPTV-KSPMAGTFYRS---PAPGEPPFIK 235

Query: 125 EDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLP 178
               V++GQVLC +E +     ++SD  G ++ I+ +DG+PV     L  V P
Sbjct: 236 VGDKVQKGQVLCIVEAMKLMNEIESDHTGTVVDIVAEDGKPVSLDTPLFVVQP 280

[Close]

BLAST of Cucsa.105260.2 vs. TrEMBL
Match: A0A0A0KA77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433220 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.4e-97
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS
Sbjct: 93  EVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 152

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP
Sbjct: 153 NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 212

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG
Sbjct: 213 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 272

Query: 182 IKKLR 187
           IKKLR
Sbjct: 273 IKKLR 277

[Close]

BLAST of Cucsa.105260.2 vs. TrEMBL
Match: A0A0S3SFD9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G014900 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-57
Identity = 121/191 (63.35%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSL--KSKNLPLPPVPAPAPDIQNTSSIPS 61
           +VE L+T +CDTSSI E ELKL+GF+LR+VR L  KSK LP PP+PA    + N    P 
Sbjct: 121 EVEFLVTKLCDTSSIGELELKLAGFHLRVVRDLTKKSKTLP-PPIPASV-SVNNVIETPK 180

Query: 62  DSNGLVKTTSLALVKP----EPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIK 121
            +NG V TTSLA+ KP    EP+SS P  I +++E+A D G+ I+ SP VG FRRSRTIK
Sbjct: 181 -TNGSVSTTSLAISKPISPVEPISS-PGSIQKFLERAADEGLVIIQSPKVGFFRRSRTIK 240

Query: 122 GKRAPPSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAV 181
           GKRAPPSC E Q V EGQV+CYIEQLGGQ+P++SD  GE++KILRKDG+PVGYGDAL+A+
Sbjct: 241 GKRAPPSCKEKQRVEEGQVICYIEQLGGQVPIESDVSGEVIKILRKDGDPVGYGDALVAI 300

Query: 182 LPSFPGIKKLR 187
           LPSFPGIKKL+
Sbjct: 301 LPSFPGIKKLQ 307

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BLAST of Cucsa.105260.2 vs. TrEMBL
Match: M5WUU1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009827mg PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-56
Identity = 111/185 (60.00%), Postives = 144/185 (77.84%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VE+L+T +CDT+S+AEFELK+ GF L ++R L  K   LPP P+PAP   N +S    S
Sbjct: 95  EVESLVTTICDTTSVAEFELKIGGFRLHVLRELTEKISTLPP-PSPAPVSVNATSEAPAS 154

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NG V T SLA+++ E    S R I   +++A D G+ ++ SP VG+FRRSRTIKGKRAPP
Sbjct: 155 NGSVPTQSLAVIRQE---HSSRNIQTLLDRAADDGLVLIHSPRVGLFRRSRTIKGKRAPP 214

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SC E Q+V+EGQV+CYIEQLGG++P++SD  GE++KILR+DG+PVGYGDALIAVLPSFPG
Sbjct: 215 SCKEKQIVKEGQVICYIEQLGGELPIESDVSGEVIKILREDGDPVGYGDALIAVLPSFPG 274

Query: 182 IKKLR 187
           IKKL+
Sbjct: 275 IKKLQ 275

[Close]

BLAST of Cucsa.105260.2 vs. TrEMBL
Match: M5WT43_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009827mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 110/185 (59.46%), Postives = 144/185 (77.84%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +V++L+T +CDT+S+AEFELK+ GF L ++R L  K   LPP P+PAP   N +S    S
Sbjct: 95  EVKSLVTTICDTTSVAEFELKIGGFRLHVLRELTEKISTLPP-PSPAPVSVNATSEAPAS 154

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NG V T SLA+++ E    S R I   +++A D G+ ++ SP VG+FRRSRTIKGKRAPP
Sbjct: 155 NGSVPTQSLAVIRQE---HSSRNIQTLLDRAADDGLVLIHSPRVGLFRRSRTIKGKRAPP 214

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SC E Q+V+EGQV+CYIEQLGG++P++SD  GE++KILR+DG+PVGYGDALIAVLPSFPG
Sbjct: 215 SCKEKQIVKEGQVICYIEQLGGELPIESDVSGEVIKILREDGDPVGYGDALIAVLPSFPG 274

Query: 182 IKKLR 187
           IKKL+
Sbjct: 275 IKKLQ 275

[Close]

BLAST of Cucsa.105260.2 vs. TrEMBL
Match: A0A061GAC6_THECC (Single hybrid motif superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_028314 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.8e-55
Identity = 116/186 (62.37%), Postives = 143/186 (76.88%), Query Frame = 1


Query: 3   VETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPS--D 62
           VE+L+ ++CDT+S+AEFELKL GF L ++R L  K+ P P +P+P P   +TS      D
Sbjct: 114 VESLVRDICDTTSVAEFELKLGGFRLYIMRDLAGKSEPPPAIPSPPPVSVSTSKTVEAPD 173

Query: 63  SNGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAP 122
           SNG V T +LA+ KP  +SSS R I   ++KA D G+ IL SP VG FRRSRTIKGKRAP
Sbjct: 174 SNGSVSTPTLAITKP--LSSSGR-IQLLLDKAADEGLVILQSPKVGFFRRSRTIKGKRAP 233

Query: 123 PSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFP 182
           PSC E Q V+EGQVLCYIEQLGG+IP++SD  GE++KILR DG+PVGYGDALIA+LPSFP
Sbjct: 234 PSCKEKQTVKEGQVLCYIEQLGGEIPIESDVSGEVIKILRDDGDPVGYGDALIALLPSFP 293

Query: 183 GIKKLR 187
           GIKKL+
Sbjct: 294 GIKKLQ 296

[Close]

BLAST of Cucsa.105260.2 vs. TAIR10
Match: AT3G15690.2 (AT3G15690.2 Single hybrid motif superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-51
Identity = 103/185 (55.68%), Postives = 128/185 (69.19%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VE L+T +CD+SSIAEFELKL GF L + R++ + N  L P P PA    N ++   +S
Sbjct: 93  EVEALVTEICDSSSIAEFELKLGGFRLYVARNI-ADNSSLQPPPTPAVTASNATTESPES 152

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NG   +TSLA+ KP                A D G+ IL SP VG FRRS+TIKGKR P 
Sbjct: 153 NGSASSTSLAISKP-------------ASSAADQGLMILQSPKVGFFRRSKTIKGKRLPS 212

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SC E   V+EGQ+LCYIEQLGGQ P++SD  GE++KILR+DGEPVGY DALI++LPSFPG
Sbjct: 213 SCKEKDQVKEGQILCYIEQLGGQFPIESDVTGEVVKILREDGEPVGYNDALISILPSFPG 263

Query: 182 IKKLR 187
           IKKL+
Sbjct: 273 IKKLQ 263

[Close]

BLAST of Cucsa.105260.2 vs. TAIR10
Match: AT1G52670.1 (AT1G52670.1 Single hybrid motif superfamily protein)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-48
Identity = 105/187 (56.15%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSD- 61
           +VE L++ + D+SSIAEFELKL GF L + R L  ++ P P    P   +   S+ P   
Sbjct: 93  EVEALISEITDSSSIAEFELKLGGFRLYVARKLTDESSPPPQQIQP---VVAASATPEGV 152

Query: 62  -SNGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRA 121
            +NG   ++SLA+ K    SSS         KA D G+ IL SP VG FRRS+TIKGKR 
Sbjct: 153 HTNGSATSSSLAITKTS--SSSADRPQTLANKAADQGLVILQSPTVGYFRRSKTIKGKRT 212

Query: 122 PPSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSF 181
           P  C E  +V+EGQVLCYIEQLGGQIPV+SD  GEI+KILR+DGEPVGY DALI VLPSF
Sbjct: 213 PTICKEKDIVKEGQVLCYIEQLGGQIPVESDVSGEIVKILREDGEPVGYNDALITVLPSF 272

Query: 182 PGIKKLR 187
           PGIKKL+
Sbjct: 273 PGIKKLQ 274

[Close]

BLAST of Cucsa.105260.2 vs. TAIR10
Match: AT3G56130.1 (AT3G56130.1 biotin/lipoyl attachment domain-containing protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 74/193 (38.34%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VE L+  +CD + +A  +LK+  F + + R + +   P+P       DI  T + P  S
Sbjct: 91  EVEALVHEMCDETEVAVLQLKVGDFEMNLKRKIGAATNPIP-----VADISPTVAPPIPS 150

Query: 62  NGLVKTTSLA----LVKPEPVSSSPRGISRY--------VEKARDGGVTILSSPNVGVFR 121
             + K+ S A      KP     SP   + Y        +E +      +++SP VG F+
Sbjct: 151 EPMNKSASSAPSPSQAKPSSEKVSPFKNTSYGKPAKLAALEASGSTNYVLVTSPAVGKFQ 210

Query: 122 RSRTIKGKRAPPSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYG 181
           RSRT+KGK+  PSC E   ++EGQV+ Y+ QLG ++PV SD  GE+LK+L  DG+ VGYG
Sbjct: 211 RSRTVKGKKQSPSCKEGDAIKEGQVIGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYG 270

Query: 182 DALIAVLPSFPGI 183
           D L+AVLPSF  I
Sbjct: 271 DPLVAVLPSFHDI 278

[Close]

BLAST of Cucsa.105260.2 vs. TAIR10
Match: AT5G16390.1 (AT5G16390.1 chloroplastic acetylcoenzyme A carboxylase 1)

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-08
Identity = 49/173 (28.32%), Postives = 75/173 (43.35%), Query Frame = 1


Query: 5   TLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDSNGL 64
           T L  + D+  I E +LK     L ++R  K + LP P  PA    +Q  +  PS +  +
Sbjct: 116 TTLVKLVDSRDIVELQLKQLDCEL-VIR--KKEALPQPQAPASYVMMQQPNQ-PSYAQQM 175

Query: 65  VKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPPSCA 124
               + A   P P + +          A+    T+  SP  G F RS        PP   
Sbjct: 176 APPAAPAAAAPAPSTPASLPPPSPPTPAKSSLPTV-KSPMAGTFYRS---PAPGEPPFIK 235

Query: 125 EDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLP 178
               V++GQVLC +E +     ++SD  G ++ I+ +DG+PV     L  V P
Sbjct: 236 VGDKVQKGQVLCIVEAMKLMNEIESDHTGTVVDIVAEDGKPVSLDTPLFVVQP 280

[Close]

BLAST of Cucsa.105260.2 vs. NCBI nr
Match: gi|449436116|ref|XP_004135840.1| (PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS
Sbjct: 93  EVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 152

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP
Sbjct: 153 NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 212

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG
Sbjct: 213 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 272

Query: 182 IKKLR 187
           IKKLR
Sbjct: 273 IKKLR 277

[Close]

BLAST of Cucsa.105260.2 vs. NCBI nr
Match: gi|659122330|ref|XP_008461084.1| (PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 7.6e-84
Identity = 160/184 (86.96%), Postives = 173/184 (94.02%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VETLLTN+CDTSSIAEFELKLSGFNLRMVRSLKS+NLPLPP PAPAPDIQNTSSIPSDS
Sbjct: 220 EVETLLTNICDTSSIAEFELKLSGFNLRMVRSLKSENLPLPPAPAPAPDIQNTSSIPSDS 279

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NGLVK TSLALVKPEPVSSSP GISRYVEKA DGG++IL SP VGVFRRSRTIKGKRAPP
Sbjct: 280 NGLVK-TSLALVKPEPVSSSPEGISRYVEKATDGGLSILVSPKVGVFRRSRTIKGKRAPP 339

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SC E+QVV+EG+VLCYI+QLG +IP++SD  GEI+KILRKDGEPVGYGD LIAVLPSFPG
Sbjct: 340 SCEENQVVKEGKVLCYIDQLGAEIPIESDISGEIVKILRKDGEPVGYGDPLIAVLPSFPG 399

Query: 182 IKKL 186
           IKKL
Sbjct: 400 IKKL 402

[Close]

BLAST of Cucsa.105260.2 vs. NCBI nr
Match: gi|659122332|ref|XP_008461085.1| (PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 9.9e-84
Identity = 160/184 (86.96%), Postives = 173/184 (94.02%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VETLLTN+CDTSSIAEFELKLSGFNLRMVRSLKS+NLPLPP PAPAPDIQNTSSIPSDS
Sbjct: 11  RVETLLTNICDTSSIAEFELKLSGFNLRMVRSLKSENLPLPPAPAPAPDIQNTSSIPSDS 70

Query: 62  NGLVKTTSLALVKPEPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGKRAPP 121
           NGLVK TSLALVKPEPVSSSP GISRYVEKA DGG++IL SP VGVFRRSRTIKGKRAPP
Sbjct: 71  NGLVK-TSLALVKPEPVSSSPEGISRYVEKATDGGLSILVSPKVGVFRRSRTIKGKRAPP 130

Query: 122 SCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLPSFPG 181
           SC E+QVV+EG+VLCYI+QLG +IP++SD  GEI+KILRKDGEPVGYGD LIAVLPSFPG
Sbjct: 131 SCEENQVVKEGKVLCYIDQLGAEIPIESDISGEIVKILRKDGEPVGYGDPLIAVLPSFPG 190

Query: 182 IKKL 186
           IKKL
Sbjct: 191 IKKL 193

[Close]

BLAST of Cucsa.105260.2 vs. NCBI nr
Match: gi|965604370|dbj|BAT91546.1| (hypothetical protein VIGAN_07014900 [Vigna angularis var. angularis])

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-57
Identity = 121/191 (63.35%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSL--KSKNLPLPPVPAPAPDIQNTSSIPS 61
           +VE L+T +CDTSSI E ELKL+GF+LR+VR L  KSK LP PP+PA    + N    P 
Sbjct: 121 EVEFLVTKLCDTSSIGELELKLAGFHLRVVRDLTKKSKTLP-PPIPASV-SVNNVIETPK 180

Query: 62  DSNGLVKTTSLALVKP----EPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIK 121
            +NG V TTSLA+ KP    EP+SS P  I +++E+A D G+ I+ SP VG FRRSRTIK
Sbjct: 181 -TNGSVSTTSLAISKPISPVEPISS-PGSIQKFLERAADEGLVIIQSPKVGFFRRSRTIK 240

Query: 122 GKRAPPSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAV 181
           GKRAPPSC E Q V EGQV+CYIEQLGGQ+P++SD  GE++KILRKDG+PVGYGDAL+A+
Sbjct: 241 GKRAPPSCKEKQRVEEGQVICYIEQLGGQVPIESDVSGEVIKILRKDGDPVGYGDALVAI 300

Query: 182 LPSFPGIKKLR 187
           LPSFPGIKKL+
Sbjct: 301 LPSFPGIKKLQ 307

[Close]

BLAST of Cucsa.105260.2 vs. NCBI nr
Match: gi|950964699|ref|XP_014498647.1| (PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vigna radiata var. radiata])

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 115/189 (60.85%), Postives = 143/189 (75.66%), Query Frame = 1


Query: 2   QVETLLTNVCDTSSIAEFELKLSGFNLRMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDS 61
           +VE L+T +CD+SSI E ELKL+GF+L +VR L  KN  LPP    +  + N    P  +
Sbjct: 92  EVEFLVTKLCDSSSIGELELKLAGFHLHVVRDLTKKNKTLPPPIPASVSVNNVIETPK-T 151

Query: 62  NGLVKTTSLALVKP----EPVSSSPRGISRYVEKARDGGVTILSSPNVGVFRRSRTIKGK 121
           NG V TTSLA+ KP    EP+SS P  I +++E+A D G+ I+ SP VG FRRSRTIKGK
Sbjct: 152 NGSVSTTSLAISKPISPVEPISS-PGSIQKFLERAADEGLVIIQSPKVGFFRRSRTIKGK 211

Query: 122 RAPPSCAEDQVVREGQVLCYIEQLGGQIPVKSDTPGEILKILRKDGEPVGYGDALIAVLP 181
           RAPPSC E Q V EGQV+CYIEQLGGQ+P++SD  GE++KILRKDG+PVGYGDAL+A+LP
Sbjct: 212 RAPPSCKEKQRVEEGQVICYIEQLGGQVPIESDVSGEVIKILRKDGDPVGYGDALVAILP 271

Query: 182 SFPGIKKLR 187
           SFPGIKKL+
Sbjct: 272 SFPGIKKLQ 278

The following BLAST results are available for this feature:

BLAST of Cucsa.105260.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BCCP_NOSS1	6.1e-09	27.81	Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain ...	[more]
BCCP1_ARATH	7.5e-07	28.32	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Ar...	[more]

BLAST of Cucsa.105260.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA77_CUCSA	1.4e-97	99.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433220 PE=4 SV=1	[more]
A0A0S3SFD9_PHAAN	1.9e-57	63.35	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G014900 PE=...	[more]
M5WUU1_PRUPE	4.6e-56	60.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009827mg PE=4 SV=1	[more]
M5WT43_PRUPE	1.4e-55	59.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009827mg PE=4 SV=1	[more]
A0A061GAC6_THECC	1.8e-55	62.37	Single hybrid motif superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_0283...	[more]

BLAST of Cucsa.105260.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15690.2	1.1e-51	55.68	Single hybrid motif superfamily protein	[more]
AT1G52670.1	1.1e-48	56.15	Single hybrid motif superfamily protein	[more]
AT3G56130.1	1.3e-30	38.34	biotin/lipoyl attachment domain-containing protein	[more]
AT5G16390.1	4.2e-08	28.32	chloroplastic acetylcoenzyme A carboxylase 1	[more]

BLAST of Cucsa.105260.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436116\|ref\|XP_004135840.1\|	2.0e-97	99.46	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloropl...	[more]
gi\|659122330\|ref\|XP_008461084.1\|	7.6e-84	86.96	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloropl...	[more]
gi\|659122332\|ref\|XP_008461085.1\|	9.9e-84	86.96	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloropl...	[more]
gi\|965604370\|dbj\|BAT91546.1\|	2.7e-57	63.35	hypothetical protein VIGAN_07014900 [Vigna angularis var. angularis]	[more]
gi\|950964699\|ref\|XP_014498647.1\|	1.8e-56	60.85	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vigna radi...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000089	Biotin_lipoyl
IPR011053	Single_hybrid_motif

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.105260	Cucsa.105260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.105260.2	Cucsa.105260.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.105260.2.five_prime_UTR.1	Cucsa.105260.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.105260.2.CDS.1	Cucsa.105260.2.CDS.1	CDS
Cucsa.105260.2.CDS.2	Cucsa.105260.2.CDS.2	CDS
Cucsa.105260.2.CDS.3	Cucsa.105260.2.CDS.3	CDS
Cucsa.105260.2.CDS.4	Cucsa.105260.2.CDS.4	CDS
Cucsa.105260.2.CDS.5	Cucsa.105260.2.CDS.5	CDS
Cucsa.105260.2.CDS.6	Cucsa.105260.2.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.105260.2.three_prime_UTR.1	Cucsa.105260.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000089	Biotin/lipoyl attachment	PFAM	PF00364	Biotin_lipoyl	coord: 122..173 score: 4.
IPR011053	Single hybrid motif	unknown	SSF51230	Single hybrid motif	coord: 88..174 score: 6.15
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 99..175 score: 1.4
None	No IPR available	PANTHER	PTHR18866	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	coord: 97..182 score: 3.6
None	No IPR available	PANTHER	PTHR18866:SF99	SUBFAMILY NOT NAMED	coord: 97..182 score: 3.6