Cucsa.100160.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.100160.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING-H2 zinc finger protein
Location	scaffold00926 : 745911 .. 747495 (+)
Sequence length	929

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCAATCTTCTTCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTtCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTCTACAGTACTAAAAGCAATTGAAGTAAGTTTTCGTTAATCCCTTTTCCTGTTCATTTCCTTTCTCAAAGAAGTGTTCGCTTTCCTCTAATGGGTTTTGTTTAGTTTCTGAATTTGGTAAAGGAAACGACTCTTTGAGCATTTCAGTTTCATAAATTTCTCTTCTTTTTCACTGGTAGACTCAACTTACTTTGACCACCGGGGGATTATTGTTCTTTATCATGTTTGAGAATGGAGGAGGGTTTCCCATTTTCACTGAAAATTGTGTGGTTTTAATCCCTCAAGAGTGTTTTGTGGAATGTTATGAGGATTTTTTGTTCTTGGGTTTTTAGTCTCTTGAAATTTCTCTTTGTGCCTGGTGGAAGATTTTGTAATTGGATCTTTAACCATAGGGTTTGCTTTTACATAAATCTATTCTTGAATGGTAGGTGGATCATGATTCATGTGATAAATTGTCATTTCATATACTTTAATGGAACTAAATGAACTACCTTCTGTTTTTCCTCAGTTTCTGCTCCTGATCTCTATTGGTTATGGAAATTTCATTAATTAGTTGCTTAGTTCATTTTCTTTCCTGACGATGTGTTCATGAACTTCAGTTATTTATTACATGGTTCATCCAAAAAAAAAAaaGAGAGAAAAAGCAAGAGGTTCTTAGTTGTTTGTTTACTTTTGTTTCAGCTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGAGTGTTCGGTGCTACAAATCTAGTTAGGGGAAAACTCATGTACAGCACTAGAGACCAAAGTTTGATGTATGTCCTAGAGACCAAAGTTTTGTCCCTGTAAATACATGTTTATGAAGTTCTACGCTTCTAGTTTCTGGCTTGTGCCTTTAGCTTTTAGGTTTTGAGTTAATGCACTATTATTTCACTTTCTTTGTATATGGAATTCTCTGAG

mRNA sequence

TCATCAATCTTCTTCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTTCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTCTACAGTACTAAAAGCAATTGAACTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGAGTGTTCGGTGCTACAAATCTAGTTAGGGGAAAACTCATGTACAGCACTAGAGACCAAAGTTTGATGTATGTCCTAGAGACCAAAGTTTTGTCCCTGTAAATACATGTTTATGAAGTTCTACGCTTCTAGTTTCTGGCTTGTGCCTTTAGCTTTTAGGTTTTGAGTTAATGCACTATTATTTCACTTTCTTTGTATATGGAATTCTCTGAG

Coding sequence (CDS)

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW*

Homology

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BLAST of Cucsa.100160.1 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.0e-38
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLS----WPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS     PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

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BLAST of Cucsa.100160.1 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1


Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of Cucsa.100160.1 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

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BLAST of Cucsa.100160.1 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 93  ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYWNITCPLCRT 143
           +  E  C +CL +FE E A+ HL  C HLFH +C+E WL   ++TCPLCR+
Sbjct: 56  KEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

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BLAST of Cucsa.100160.1 vs. Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-08
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMS----EEGK 151
           +C +CL+ +E E+ +  L CGH FH  C++KWL Y N TCPLC+  ++     EEG+
Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCKYNILKSSNYEEGE 379

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BLAST of Cucsa.100160.1 vs. TrEMBL
Match: A0A0A0K534_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.5e-81
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

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BLAST of Cucsa.100160.1 vs. TrEMBL
Match: A0A0A0K6E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.2e-75
Identity = 139/154 (90.26%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGI LSW STVVPS DSF SSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEE K CFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 154

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BLAST of Cucsa.100160.1 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 109/155 (70.32%), Postives = 121/155 (78.06%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVL VILVNTALSIS+FK IVR ILH+VGI LS   T+  SPDS E++ 
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           E  + +   + +Y+E FR R P I FDKV S +  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEG-KSCFW 155
           FH  CLEKWLDYWN+TCPLCRTPLM EE   SCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

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BLAST of Cucsa.100160.1 vs. TrEMBL
Match: B9IAV8_POPTR (Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16830g PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.4e-52
Identity = 107/154 (69.48%), Postives = 119/154 (77.27%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVL V+LVNTALSIS+ K IVR ILH+VGIRLS PS  +PS D+ E + 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIVKGIVRSILHIVGIRLS-PSASLPSSDNAEDTR 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           E  +       NY+E FR R P IRF+ V S E+ EHDCSVCLTQFEPES IN LSCGH+
Sbjct: 61  ESLEFRLSPPENYIEEFRSRMPSIRFNTVCSCEQPEHDCSVCLTQFEPESEINSLSCGHI 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FH  CLEKWLDYWNITCPLCRTPL+ EE  SCFW
Sbjct: 121 FHKMCLEKWLDYWNITCPLCRTPLLPEEDASCFW 153

[Close]

BLAST of Cucsa.100160.1 vs. TrEMBL
Match: C6SVI3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G190300 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVL V+LVNT LSIS+FK IVR ILH+VGI L   ST   SPD  +++ 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLPSSSTSPSSPDPSQAAP 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           E  + +   S +Y+E FR R P +RFD V  S+R EHDCSVCLTQFEPES IN LSCGHL
Sbjct: 61  ESFELHLSPSESYIEEFRSRTPTLRFDSVCCSKRLEHDCSVCLTQFEPESEINRLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FH  CLEKWLDYWNITCPLCRTPLM E+   CF
Sbjct: 121 FHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCF 153

[Close]

BLAST of Cucsa.100160.1 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-39
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLS----WPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS     PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Cucsa.100160.1 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-15
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VR +++MV            S ++ E+ +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINH-LSCGH 120
           +  D +   S     +       +  ++   +ER   DC VCL  F+ E  ++  +SC H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTDCLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Cucsa.100160.1 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 76  MFRHRCPRIRFDKVPSS-ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +S E    +C+VCL +FE E  I  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]

BLAST of Cucsa.100160.1 vs. TAIR10
Match: AT3G60220.1 (AT3G60220.1 TOXICOS EN LEVADURA 4)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = 1


Query: 4   SSLPAPSEGVLNVILVNT-ALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSEL 63
           SSL +    VL +IL+    L IS+  C +   L+    R   P +   S  +  S S  
Sbjct: 19  SSLDSLKPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRR 78

Query: 64  GDPNCGSSWNYLEMFRHRCPRIRFDKVP--SSERREHDCSVCLTQFEPESAINHLS-CGH 123
              +  S            P  +F  V   SS     DC+VCL++FEPE  +  L  C H
Sbjct: 79  FSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCH 138

Query: 124 LFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
            FH DC++ WL   N TCPLCR+PL + E
Sbjct: 139 AFHADCIDIWL-VSNQTCPLCRSPLFASE 166

[Close]

BLAST of Cucsa.100160.1 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1


Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of Cucsa.100160.1 vs. NCBI nr
Match: gi|778723425|ref|XP_004144555.2| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 5.0e-81
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of Cucsa.100160.1 vs. NCBI nr
Match: gi|778723422|ref|XP_011658651.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 9.4e-80
Identity = 145/153 (94.77%), Postives = 146/153 (95.42%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153

[Close]

BLAST of Cucsa.100160.1 vs. NCBI nr
Match: gi|659124202|ref|XP_008462033.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo])

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of Cucsa.100160.1 vs. NCBI nr
Match: gi|659124198|ref|XP_008462031.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 5.7e-77
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Cucsa.100160.1 vs. NCBI nr
Match: gi|659124200|ref|XP_008462032.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 139/153 (90.85%), Postives = 144/153 (94.12%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

The following BLAST results are available for this feature:

BLAST of Cucsa.100160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	4.0e-38	56.67	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RHA2B_ARATH	3.0e-09	44.44	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2	[more]
RHA2A_ARATH	3.9e-09	47.06	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1	[more]
ATL18_ARATH	1.1e-08	49.02	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1	[more]
RING2_ARATH	4.3e-08	43.86	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 ...	[more]

BLAST of Cucsa.100160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K534_CUCSA	3.5e-81	94.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1	[more]
A0A0A0K6E0_CUCSA	2.2e-75	90.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1	[more]
A0A0A0KAU4_CUCSA	2.3e-53	70.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1	[more]
B9IAV8_POPTR	3.4e-52	69.48	Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16...	[more]
C6SVI3_SOYBN	1.1e-50	67.32	Uncharacterized protein OS=Glycine max GN=GLYMA_14G190300 PE=2 SV=1	[more]

BLAST of Cucsa.100160.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04240.1	2.2e-39	56.67	RING/U-box superfamily protein	[more]
AT1G67856.1	2.9e-15	31.72	RING/U-box superfamily protein	[more]
AT3G61460.1	1.4e-12	42.67	brassinosteroid-responsive RING-H2	[more]
AT3G60220.1	1.2e-11	34.23	TOXICOS EN LEVADURA 4	[more]
AT2G01150.1	1.7e-10	44.44	RING-H2 finger protein 2B	[more]

BLAST of Cucsa.100160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778723425\|ref\|XP_004144555.2\|	5.0e-81	94.81	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativ...	[more]
gi\|778723422\|ref\|XP_011658651.1\|	9.4e-80	94.77	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativ...	[more]
gi\|659124202\|ref\|XP_008462033.1\|	1.1e-77	92.16	PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo]	[more]
gi\|659124198\|ref\|XP_008462031.1\|	5.7e-77	90.91	PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo]	[more]
gi\|659124200\|ref\|XP_008462032.1\|	1.1e-75	90.85	PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.100160	Cucsa.100160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.100160.1	Cucsa.100160.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.100160.1.five_prime_UTR.1	Cucsa.100160.1.five_prime_UTR.1	five_prime_UTR
Cucsa.100160.1.five_prime_UTR.2	Cucsa.100160.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.100160.1.CDS.1	Cucsa.100160.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.100160.1.three_prime_UTR.1	Cucsa.100160.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 score: 3.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 99..141 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 95..144 score: 6.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 98..145 score: 3.8
None	No IPR available	PANTHER	PTHR14155:SF184	SUBFAMILY NOT NAMED	coord: 98..145 score: 3.8
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 93..146 score: 2.83