Cucsa.100160 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.100160
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRING-H2 zinc finger protein
Locationscaffold00926 : 745911 .. 747495 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCAATCTTCTTCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTtCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTCTACAGTACTAAAAGCAATTGAAGTAAGTTTTCGTTAATCCCTTTTCCTGTTCATTTCCTTTCTCAAAGAAGTGTTCGCTTTCCTCTAATGGGTTTTGTTTAGTTTCTGAATTTGGTAAAGGAAACGACTCTTTGAGCATTTCAGTTTCATAAATTTCTCTTCTTTTTCACTGGTAGACTCAACTTACTTTGACCACCGGGGGATTATTGTTCTTTATCATGTTTGAGAATGGAGGAGGGTTTCCCATTTTCACTGAAAATTGTGTGGTTTTAATCCCTCAAGAGTGTTTTGTGGAATGTTATGAGGATTTTTTGTTCTTGGGTTTTTAGTCTCTTGAAATTTCTCTTTGTGCCTGGTGGAAGATTTTGTAATTGGATCTTTAACCATAGGGTTTGCTTTTACATAAATCTATTCTTGAATGGTAGGTGGATCATGATTCATGTGATAAATTGTCATTTCATATACTTTAATGGAACTAAATGAACTACCTTCTGTTTTTCCTCAGTTTCTGCTCCTGATCTCTATTGGTTATGGAAATTTCATTAATTAGTTGCTTAGTTCATTTTCTTTCCTGACGATGTGTTCATGAACTTCAGTTATTTATTACATGGTTCATCCAAAAAAAAAAaaGAGAGAAAAAGCAAGAGGTTCTTAGTTGTTTGTTTACTTTTGTTTCAGCTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGAGTGTTCGGTGCTACAAATCTAGTTAGGGGAAAACTCATGTACAGCACTAGAGACCAAAGTTTGATGTATGTCCTAGAGACCAAAGTTTTGTCCCTGTAAATACATGTTTATGAAGTTCTACGCTTCTAGTTTCTGGCTTGTGCCTTTAGCTTTTAGGTTTTGAGTTAATGCACTATTATTTCACTTTCTTTGTATATGGAATTCTCTGAG

mRNA sequence

TCATCAATCTTCTTCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTTCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTCTACAGTACTAAAAGCAATTGAACTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGAGTGTTCGGTGCTACAAATCTAGTTAGGGGAAAACTCATGTACAGCACTAGAGACCAAAGTTTGATGTATGTCCTAGAGACCAAAGTTTTGTCCCTGTAAATACATGTTTATGAAGTTCTACGCTTCTAGTTTCTGGCTTGTGCCTTTAGCTTTTAGGTTTTGAGTTAATGCACTATTATTTCACTTTCTTTGTATATGGAATTCTCTGAG

Coding sequence (CDS)

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW*
Homology
[Close]
BLAST of Cucsa.100160 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.0e-38
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLS----WPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS     PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of Cucsa.100160 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 

Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]
BLAST of Cucsa.100160 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]
BLAST of Cucsa.100160 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 93  ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYWNITCPLCRT 143
           +  E  C +CL +FE E A+ HL  C HLFH +C+E WL   ++TCPLCR+
Sbjct: 56  KEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

[Close]
BLAST of Cucsa.100160 vs. Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-08
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1 

Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMS----EEGK 151
           +C +CL+ +E E+ +  L CGH FH  C++KWL Y N TCPLC+  ++     EEG+
Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCKYNILKSSNYEEGE 379

[Close]
BLAST of Cucsa.100160 vs. TrEMBL
Match: A0A0A0K534_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.5e-81
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of Cucsa.100160 vs. TrEMBL
Match: A0A0A0K6E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.2e-75
Identity = 139/154 (90.26%), Postives = 140/154 (90.91%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGI LSW STVVPS DSF SSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEE K CFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 154

[Close]
BLAST of Cucsa.100160 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 109/155 (70.32%), Postives = 121/155 (78.06%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVL VILVNTALSIS+FK IVR ILH+VGI LS   T+  SPDS E++ 
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           E  + +   + +Y+E FR R P I FDKV S +  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEG-KSCFW 155
           FH  CLEKWLDYWN+TCPLCRTPLM EE   SCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]
BLAST of Cucsa.100160 vs. TrEMBL
Match: B9IAV8_POPTR (Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16830g PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.4e-52
Identity = 107/154 (69.48%), Postives = 119/154 (77.27%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVL V+LVNTALSIS+ K IVR ILH+VGIRLS PS  +PS D+ E + 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIVKGIVRSILHIVGIRLS-PSASLPSSDNAEDTR 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           E  +       NY+E FR R P IRF+ V S E+ EHDCSVCLTQFEPES IN LSCGH+
Sbjct: 61  ESLEFRLSPPENYIEEFRSRMPSIRFNTVCSCEQPEHDCSVCLTQFEPESEINSLSCGHI 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FH  CLEKWLDYWNITCPLCRTPL+ EE  SCFW
Sbjct: 121 FHKMCLEKWLDYWNITCPLCRTPLLPEEDASCFW 153

[Close]
BLAST of Cucsa.100160 vs. TrEMBL
Match: C6SVI3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G190300 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVL V+LVNT LSIS+FK IVR ILH+VGI L   ST   SPD  +++ 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLPSSSTSPSSPDPSQAAP 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           E  + +   S +Y+E FR R P +RFD V  S+R EHDCSVCLTQFEPES IN LSCGHL
Sbjct: 61  ESFELHLSPSESYIEEFRSRTPTLRFDSVCCSKRLEHDCSVCLTQFEPESEINRLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FH  CLEKWLDYWNITCPLCRTPLM E+   CF
Sbjct: 121 FHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCF 153

[Close]
BLAST of Cucsa.100160 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-39
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLS----WPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS     PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of Cucsa.100160 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-15
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VR +++MV            S ++ E+ +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINH-LSCGH 120
           +  D +   S     +       +  ++   +ER   DC VCL  F+ E  ++  +SC H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTDCLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]
BLAST of Cucsa.100160 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 76  MFRHRCPRIRFDKVPSS-ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +S E    +C+VCL +FE E  I  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]
BLAST of Cucsa.100160 vs. TAIR10
Match: AT3G60220.1 (AT3G60220.1 TOXICOS EN LEVADURA 4)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = 1 

Query: 4   SSLPAPSEGVLNVILVNT-ALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSEL 63
           SSL +    VL +IL+    L IS+  C +   L+    R   P +   S  +  S S  
Sbjct: 19  SSLDSLKPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRR 78

Query: 64  GDPNCGSSWNYLEMFRHRCPRIRFDKVP--SSERREHDCSVCLTQFEPESAINHLS-CGH 123
              +  S            P  +F  V   SS     DC+VCL++FEPE  +  L  C H
Sbjct: 79  FSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCH 138

Query: 124 LFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
            FH DC++ WL   N TCPLCR+PL + E
Sbjct: 139 AFHADCIDIWL-VSNQTCPLCRSPLFASE 166

[Close]
BLAST of Cucsa.100160 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 

Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]
BLAST of Cucsa.100160 vs. NCBI nr
Match: gi|778723425|ref|XP_004144555.2| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 5.0e-81
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of Cucsa.100160 vs. NCBI nr
Match: gi|778723422|ref|XP_011658651.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 9.4e-80
Identity = 145/153 (94.77%), Postives = 146/153 (95.42%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153

[Close]
BLAST of Cucsa.100160 vs. NCBI nr
Match: gi|659124202|ref|XP_008462033.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo])

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]
BLAST of Cucsa.100160 vs. NCBI nr
Match: gi|659124198|ref|XP_008462031.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 5.7e-77
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of Cucsa.100160 vs. NCBI nr
Match: gi|659124200|ref|XP_008462032.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 139/153 (90.85%), Postives = 144/153 (94.12%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

The following BLAST results are available for this feature:
BLAST of Cucsa.100160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XERIC_ARATH4.0e-3856.67Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RHA2B_ARATH3.0e-0944.44E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2[more]
RHA2A_ARATH3.9e-0947.06E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
ATL18_ARATH1.1e-0849.02RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1[more]
RING2_ARATH4.3e-0843.86E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 ... [more]
BLAST of Cucsa.100160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K534_CUCSA3.5e-8194.81Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1[more]
A0A0A0K6E0_CUCSA2.2e-7590.26Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1[more]
A0A0A0KAU4_CUCSA2.3e-5370.32Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1[more]
B9IAV8_POPTR3.4e-5269.48Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16... [more]
C6SVI3_SOYBN1.1e-5067.32Uncharacterized protein OS=Glycine max GN=GLYMA_14G190300 PE=2 SV=1[more]
BLAST of Cucsa.100160 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04240.12.2e-3956.67 RING/U-box superfamily protein[more]
AT1G67856.12.9e-1531.72 RING/U-box superfamily protein[more]
AT3G61460.11.4e-1242.67 brassinosteroid-responsive RING-H2[more]
AT3G60220.11.2e-1134.23 TOXICOS EN LEVADURA 4[more]
AT2G01150.11.7e-1044.44 RING-H2 finger protein 2B[more]
BLAST of Cucsa.100160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778723425|ref|XP_004144555.2|5.0e-8194.81PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativ... [more]
gi|778723422|ref|XP_011658651.1|9.4e-8094.77PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativ... [more]
gi|659124202|ref|XP_008462033.1|1.1e-7792.16PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo][more]
gi|659124198|ref|XP_008462031.1|5.7e-7790.91PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo][more]
gi|659124200|ref|XP_008462032.1|1.1e-7590.85PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.100160.1Cucsa.100160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 98..141
score: 3.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 99..140
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 99..141
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 95..144
score: 6.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 98..145
score: 3.8
NoneNo IPR availablePANTHERPTHR14155:SF184SUBFAMILY NOT NAMEDcoord: 98..145
score: 3.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 93..146
score: 2.83

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.100160Melon (DHL92) v3.6.1cgymedB116
Cucsa.100160Melon (DHL92) v3.6.1cgymedB119
Cucsa.100160Silver-seed gourdcarcgyB0237
Cucsa.100160Silver-seed gourdcarcgyB0405
Cucsa.100160Silver-seed gourdcarcgyB1182
Cucsa.100160Silver-seed gourdcarcgyB1183
Cucsa.100160Cucumber (Chinese Long) v3cgycucB115
Cucsa.100160Cucumber (Chinese Long) v3cgycucB116
Cucsa.100160Watermelon (97103) v2cgywmbB125
Cucsa.100160Wax gourdcgywgoB145
Cucsa.100160Cucumber (Gy14) v1cgycgyB040
Cucsa.100160Cucurbita maxima (Rimu)cgycmaB0214
Cucsa.100160Cucurbita maxima (Rimu)cgycmaB0215
Cucsa.100160Cucurbita maxima (Rimu)cgycmaB0216
Cucsa.100160Cucurbita maxima (Rimu)cgycmaB0217
Cucsa.100160Cucurbita moschata (Rifu)cgycmoB0208
Cucsa.100160Cucurbita moschata (Rifu)cgycmoB0209
Cucsa.100160Cucurbita moschata (Rifu)cgycmoB0210
Cucsa.100160Cucurbita moschata (Rifu)cgycmoB0211
Cucsa.100160Wild cucumber (PI 183967)cgycpiB111
Cucsa.100160Wild cucumber (PI 183967)cgycpiB112
Cucsa.100160Cucumber (Chinese Long) v2cgycuB110
Cucsa.100160Cucumber (Chinese Long) v2cgycuB111
Cucsa.100160Melon (DHL92) v3.5.1cgymeB119
Cucsa.100160Melon (DHL92) v3.5.1cgymeB121
Cucsa.100160Watermelon (Charleston Gray)cgywcgB130
Cucsa.100160Watermelon (97103) v1cgywmB130
Cucsa.100160Cucurbita pepo (Zucchini)cgycpeB0206
Cucsa.100160Cucurbita pepo (Zucchini)cgycpeB0207
Cucsa.100160Cucurbita pepo (Zucchini)cgycpeB0208
Cucsa.100160Cucurbita pepo (Zucchini)cgycpeB0209
Cucsa.100160Bottle gourd (USVL1VR-Ls)cgylsiB121
Cucsa.100160Bottle gourd (USVL1VR-Ls)cgylsiB122