Cucsa.084760.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCTCTCTTCCTTCTCATCTCGTCCAAACCATAATTGTTATCTTCTCTATAACGATCAACGAATCACTTCCTAATCTCAACCGGAAAGCTGAGATGAGTTCTACTGAAGTTTCCACGAAGGGTGGCAGAGGCAAGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCCGTCGGTCGTATCGCTAGGTACCTCAAGAAAGGTCGTTATGCTCAGCGTGTTGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTCTAATTGTTAACTTCACTTTGAGTGCAATTCTCTCAGTTTACAGTGTTCTGATTTAGGTCTTTTGTTTTTGTTTTAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACACATCCAGCTTGCGGTGAGAAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATCCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATTGGATCGGCGTCTCAGGAATTCTAGGTTATAGTAGAAATTGCCGTTGATGAATATAAAATCAAATAGGTAGTGAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGAGTTCATTCTTCTTTTCGTTTGTAAATTTTGCGAATCGAACTGTGCTTAGATTTGTATCTGTCATCATCGTCGTTCAAATTTTATGTTATTCAGTGTAAATGGCGATGAAGTTCAACATTAATTGGAATTGAAAGAAATTATTTGAATT CCCTCTCTTCCTTCTCATCTCGTCCAAACCATAATTGTTATCTTCTCTATAACGATCAACGAATCACTTCCTAATCTCAACCGGAAAGCTGAGATGAGTTCTACTGAAGTTTCCACGAAGGGTGGCAGAGGCAAGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCCGTCGGTCGTATCGCTAGGTACCTCAAGAAAGGTCGTTATGCTCAGCGTGTTGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACACATCCAGCTTGCGGTGAGAAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATCCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATTGGATCGGCGTCTCAGGAATTCTAGGTTATAGTAGAAATTGCCGTTGATGAATATAAAATCAAATAGGTAGTGAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGAGTTCATTCTTCTTTTCGTTTGTAAATTTTGCGAATCGAACTGTGCTTAGATTTGTATCTGTCATCATCGTCGTTCAAATTTTATGTTATTCAGTGTAAATGGCGATGAAGTTCAACATTAATTGGAATTGAAAGAAATTATTTGAATT ATGAGTTCTACTGAAGTTTCCACGAAGGGTGGCAGAGGCAAGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCCGTCGGTCGTATCGCTAGGTACCTCAAGAAAGGTCGTTATGCTCAGCGTGTTGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACACATCCAGCTTGCGGTGAGAAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATCCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATTGGATCGGCGTCTCAGGAATTCTAG MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF*
BLAST of Cucsa.084760.1 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57 Identity = 117/142 (82.39%), Postives = 129/142 (90.85%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57 Identity = 117/142 (82.39%), Postives = 129/142 (90.85%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 7.9e-57 Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 7.9e-57 Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56 Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TrEMBL
Match: A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 1.1e-70 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TrEMBL
Match: A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59 Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TrEMBL
Match: A0A0L9U7S5_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59 Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TrEMBL
Match: V7CZN0_PHAVU (Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.0e-59 Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 3.4e-59 Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein) HSP 1 Score: 220.3 bits (560), Expect = 7.6e-58 Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX) HSP 1 Score: 219.9 bits (559), Expect = 9.9e-58 Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2) HSP 1 Score: 194.1 bits (492), Expect = 5.8e-50 Identity = 100/128 (78.12%), Postives = 112/128 (87.50%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10) HSP 1 Score: 191.8 bits (486), Expect = 2.9e-49 Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13) HSP 1 Score: 191.0 bits (484), Expect = 4.9e-49 Identity = 99/128 (77.34%), Postives = 109/128 (85.16%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. NCBI nr
Match: gi|449462306|ref|XP_004148882.1| (PREDICTED: histone H2AX-like [Cucumis sativus]) HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. NCBI nr
Match: gi|659101083|ref|XP_008451416.1| (PREDICTED: histone H2AX-like [Cucumis melo]) HSP 1 Score: 272.7 bits (696), Expect = 3.6e-70 Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. NCBI nr
Match: gi|920695650|gb|KOM38875.1| (hypothetical protein LR48_Vigan03g225700 [Vigna angularis]) HSP 1 Score: 236.9 bits (603), Expect = 2.2e-59 Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. NCBI nr
Match: gi|593798658|ref|XP_007162367.1| (hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris]) HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59 Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1
BLAST of Cucsa.084760.1 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus]) HSP 1 Score: 235.7 bits (600), Expect = 4.9e-59 Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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