Cucsa.084760 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.084760
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionHistone H2A
Locationscaffold00862 : 414289 .. 415125 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTCTCTTCCTTCTCATCTCGTCCAAACCATAATTGTTATCTTCTCTATAACGATCAACGAATCACTTCCTAATCTCAACCGGAAAGCTGAGATGAGTTCTACTGAAGTTTCCACGAAGGGTGGCAGAGGCAAGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCCGTCGGTCGTATCGCTAGGTACCTCAAGAAAGGTCGTTATGCTCAGCGTGTTGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTCTAATTGTTAACTTCACTTTGAGTGCAATTCTCTCAGTTTACAGTGTTCTGATTTAGGTCTTTTGTTTTTGTTTTAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACACATCCAGCTTGCGGTGAGAAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATCCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATTGGATCGGCGTCTCAGGAATTCTAGGTTATAGTAGAAATTGCCGTTGATGAATATAAAATCAAATAGGTAGTGAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGAGTTCATTCTTCTTTTCGTTTGTAAATTTTGCGAATCGAACTGTGCTTAGATTTGTATCTGTCATCATCGTCGTTCAAATTTTATGTTATTCAGTGTAAATGGCGATGAAGTTCAACATTAATTGGAATTGAAAGAAATTATTTGAATT

mRNA sequence

CCCTCTCTTCCTTCTCATCTCGTCCAAACCATAATTGTTATCTTCTCTATAACGATCAACGAATCACTTCCTAATCTCAACCGGAAAGCTGAGATGAGTTCTACTGAAGTTTCCACGAAGGGTGGCAGAGGCAAGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCCGTCGGTCGTATCGCTAGGTACCTCAAGAAAGGTCGTTATGCTCAGCGTGTTGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACACATCCAGCTTGCGGTGAGAAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATCCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATTGGATCGGCGTCTCAGGAATTCTAGGTTATAGTAGAAATTGCCGTTGATGAATATAAAATCAAATAGGTAGTGAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGAGTTCATTCTTCTTTTCGTTTGTAAATTTTGCGAATCGAACTGTGCTTAGATTTGTATCTGTCATCATCGTCGTTCAAATTTTATGTTATTCAGTGTAAATGGCGATGAAGTTCAACATTAATTGGAATTGAAAGAAATTATTTGAATT

Coding sequence (CDS)

ATGAGTTCTACTGAAGTTTCCACGAAGGGTGGCAGAGGCAAGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCCGTCGGTCGTATCGCTAGGTACCTCAAGAAAGGTCGTTATGCTCAGCGTGTTGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACACATCCAGCTTGCGGTGAGAAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATCCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATTGGATCGGCGTCTCAGGAATTCTAG

Protein sequence

MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF*
Homology
[Close]
BLAST of Cucsa.084760 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 117/142 (82.39%), Postives = 129/142 (90.85%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS+    KGGRGK  STKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AV
Sbjct: 1   MSSS--GAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK+G  KDK EIGSASQEF
Sbjct: 121 LLPKKSG--KDKGEIGSASQEF 138

[Close]
BLAST of Cucsa.084760 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 117/142 (82.39%), Postives = 129/142 (90.85%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  +TKGGRGK  ++KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]
BLAST of Cucsa.084760 vs. Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.9e-57
Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 1 

Query: 10  GGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRGK   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]
BLAST of Cucsa.084760 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.9e-57
Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 1 

Query: 10  GGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRGK   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]
BLAST of Cucsa.084760 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 7   STKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRGK  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]
BLAST of Cucsa.084760 vs. TrEMBL
Match: A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]
BLAST of Cucsa.084760 vs. TrEMBL
Match: A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MSSTEVST---KGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRGK  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]
BLAST of Cucsa.084760 vs. TrEMBL
Match: A0A0L9U7S5_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MSSTEVST---KGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRGK  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]
BLAST of Cucsa.084760 vs. TrEMBL
Match: V7CZN0_PHAVU (Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-59
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MSSTEVST---KGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEV+T   KGGRGK  +TKSVSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           SAVLEYLAAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]
BLAST of Cucsa.084760 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-59
Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  STKGGRGK  +TKSVSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

[Close]
BLAST of Cucsa.084760 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 220.3 bits (560), Expect = 7.6e-58
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 7   STKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRGK  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]
BLAST of Cucsa.084760 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 219.9 bits (559), Expect = 9.9e-58
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 7   STKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRGK  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]
BLAST of Cucsa.084760 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 194.1 bits (492), Expect = 5.8e-50
Identity = 100/128 (78.12%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 11  GRGKK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK+    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNAKDKAE 135
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]
BLAST of Cucsa.084760 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 191.8 bits (486), Expect = 2.9e-49
Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 11  GRGKK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK     ++ K+ +RS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 131 GNAKDKAE 135
           G +K  AE
Sbjct: 123 GASKPSAE 130

[Close]
BLAST of Cucsa.084760 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 191.0 bits (484), Expect = 4.9e-49
Identity = 99/128 (77.34%), Postives = 109/128 (85.16%), Query Frame = 1 

Query: 11  GRGKKAST----KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK   +    KS SRS KAGLQFPVGRIAR+LK G+YA RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

Query: 131 GNAKDKAE 135
           G +K  A+
Sbjct: 123 GASKPSAD 130

[Close]
BLAST of Cucsa.084760 vs. NCBI nr
Match: gi|449462306|ref|XP_004148882.1| (PREDICTED: histone H2AX-like [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]
BLAST of Cucsa.084760 vs. NCBI nr
Match: gi|659101083|ref|XP_008451416.1| (PREDICTED: histone H2AX-like [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 3.6e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]
BLAST of Cucsa.084760 vs. NCBI nr
Match: gi|920695650|gb|KOM38875.1| (hypothetical protein LR48_Vigan03g225700 [Vigna angularis])

HSP 1 Score: 236.9 bits (603), Expect = 2.2e-59
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MSSTEVST---KGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRGK  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]
BLAST of Cucsa.084760 vs. NCBI nr
Match: gi|593798658|ref|XP_007162367.1| (hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris])

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MSSTEVST---KGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEV+T   KGGRGK  +TKSVSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           SAVLEYLAAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]
BLAST of Cucsa.084760 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-59
Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 1 

Query: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  STKGGRGK  +TKSVSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

The following BLAST results are available for this feature:
BLAST of Cucsa.084760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AX_PICAB1.2e-5782.39Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AX_CICAR1.6e-5782.39Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ORYSI7.9e-5784.21Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1[more]
H2AXB_ORYSJ7.9e-5784.21Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1[more]
H2AXA_ARATH1.3e-5682.35Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1[more]
BLAST of Cucsa.084760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K525_CUCSA1.1e-70100.00Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1[more]
A0A0S3RXP1_PHAAN1.5e-5987.59Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1[more]
A0A0L9U7S5_PHAAN1.5e-5987.59Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1[more]
V7CZN0_PHAVU2.0e-5987.59Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1[more]
A0A0A0LW51_CUCSA3.4e-5985.21Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1[more]
BLAST of Cucsa.084760 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08880.17.6e-5882.35 Histone superfamily protein[more]
AT1G54690.19.9e-5882.35 gamma histone variant H2AX[more]
AT4G27230.15.8e-5078.13 histone H2A 2[more]
AT1G51060.12.9e-4976.56 histone H2A 10[more]
AT3G20670.14.9e-4977.34 histone H2A 13[more]
BLAST of Cucsa.084760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462306|ref|XP_004148882.1|1.6e-70100.00PREDICTED: histone H2AX-like [Cucumis sativus][more]
gi|659101083|ref|XP_008451416.1|3.6e-7099.30PREDICTED: histone H2AX-like [Cucumis melo][more]
gi|920695650|gb|KOM38875.1|2.2e-5987.59hypothetical protein LR48_Vigan03g225700 [Vigna angularis][more]
gi|593798658|ref|XP_007162367.1|2.9e-5987.59hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris][more]
gi|449435726|ref|XP_004135645.1|4.9e-5985.21PREDICTED: histone H2AX [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.084760.1Cucsa.084760.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 77..91
score: 2.0E-49coord: 63..76
score: 2.0E-49coord: 48..63
score: 2.0E-49coord: 19..41
score: 2.0E-49coord: 105..123
score: 2.0
IPR002119Histone H2ASMARTSM00414h2a4coord: 8..128
score: 3.8
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 3..94
score: 7.6
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 11..127
score: 2.8
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 22..125
score: 3.29
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 7..142
score: 1.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.084760Cp4.1LG12g05200Cucurbita pepo (Zucchini)cgycpeB0150
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.084760Cucurbita pepo (Zucchini)cgycpeB0151
Cucsa.084760Cucurbita pepo (Zucchini)cgycpeB0152
Cucsa.084760Cucurbita pepo (Zucchini)cgycpeB0153
Cucsa.084760Bottle gourd (USVL1VR-Ls)cgylsiB090
Cucsa.084760Bottle gourd (USVL1VR-Ls)cgylsiB091
Cucsa.084760Melon (DHL92) v3.6.1cgymedB092
Cucsa.084760Silver-seed gourdcarcgyB0128
Cucsa.084760Silver-seed gourdcarcgyB0980
Cucsa.084760Cucumber (Chinese Long) v3cgycucB087
Cucsa.084760Watermelon (97103) v2cgywmbB088
Cucsa.084760Watermelon (97103) v2cgywmbB089
Cucsa.084760Wax gourdcgywgoB103
Cucsa.084760Cucurbita maxima (Rimu)cgycmaB0156
Cucsa.084760Cucurbita maxima (Rimu)cgycmaB0157
Cucsa.084760Cucurbita maxima (Rimu)cgycmaB0158
Cucsa.084760Cucurbita maxima (Rimu)cgycmaB0159
Cucsa.084760Cucurbita moschata (Rifu)cgycmoB0151
Cucsa.084760Cucurbita moschata (Rifu)cgycmoB0152
Cucsa.084760Cucurbita moschata (Rifu)cgycmoB0153
Cucsa.084760Cucurbita moschata (Rifu)cgycmoB0154
Cucsa.084760Wild cucumber (PI 183967)cgycpiB088
Cucsa.084760Cucumber (Chinese Long) v2cgycuB085
Cucsa.084760Melon (DHL92) v3.5.1cgymeB093
Cucsa.084760Melon (DHL92) v3.5.1cgymeB094
Cucsa.084760Watermelon (Charleston Gray)cgywcgB090
Cucsa.084760Watermelon (Charleston Gray)cgywcgB091
Cucsa.084760Watermelon (97103) v1cgywmB092
Cucsa.084760Watermelon (97103) v1cgywmB094