Cucsa.079000.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.079000.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00793 : 1539204 .. 1539812 (+)
Sequence length609
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGATTTAAAGTTGATCCCAATACAACCTTGAATAGAAATTTGCACAACTCAATTCCTCAACCACACCTTAACTTTCCAACAACACAATTCTAACTCATTCCAGTTTTAACTCATTTAAGACCAAAAaCAATAATTATTTGGTGTACCAAACCCAACGAGAACTAAGCAAAACTCACCAAGGGCTCAAATATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGGGTCTTGAGACTCATGACTCGCATACGACTTACACAGGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGGGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAATGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGAGTGGAGGCGACCGACAACTAGTGACGGTGAAGAACGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAG

mRNA sequence

ccaagatttaaagttgatcccaatacaaccttgaatagaaatttgcacaactcaattcctcaaccacaccttaactttccaacaacacaattctaactcattccagttttaactcatttaagaccaaaaacaataattatttggtgtaccaaacccaacgagaactaagcaaaactcaccaagggctcaaatatgttgcagacggctaaactgaaggtggctcggttagcaagggcttcggcTCGGGTCTTGAGACTCATGACTCGCATACGACTTACACAGGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGGGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAATGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGAGTGGAGGCGACCGACAACTAGTGACGGTGAAGAACGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAG

Coding sequence (CDS)

ATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGGGTCTTGAGACTCATGACTCGCATACGACTTACACAGGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGGGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAATGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGAGTGGAGGCGACCGACAACTAGTGACGGTGAAGAACGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAG

Protein sequence

MLQTAKLKVARLARASARVLRLMTRIRLTQERLGAHGSRTAYTELAWVRLTQKWLGCARLAYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPTTSDGEERGADDWRKLDGTGSRW*
Homology
[Close]
BLAST of Cucsa.079000.1 vs. TrEMBL
Match: A0A0A0K4E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G325170 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-67
Identity = 132/138 (95.65%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 1   MLQTAKLKVARLARASARVLRLMTRIRLTQERLGAHGSRTAYTELAWVRLTQKWLGCARL 60
           MLQTAKLKVARLARASARVLRL   IRLTQERLGAH SRTAYTELA VRLTQKWLGCARL
Sbjct: 1   MLQTAKLKVARLARASARVLRLTAHIRLTQERLGAHSSRTAYTELACVRLTQKWLGCARL 60

Query: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPTTSDG 120
           AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRP TSDG
Sbjct: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPKTSDG 120

Query: 121 EERGADDWRKLDGTGSRW 139
           EERGADDWRKLDGTGSRW
Sbjct: 121 EERGADDWRKLDGTGSRW 138

[Close]
BLAST of Cucsa.079000.1 vs. NCBI nr
Match: gi|700189292|gb|KGN44525.1| (hypothetical protein Csa_7G325170 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-67
Identity = 132/138 (95.65%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 1   MLQTAKLKVARLARASARVLRLMTRIRLTQERLGAHGSRTAYTELAWVRLTQKWLGCARL 60
           MLQTAKLKVARLARASARVLRL   IRLTQERLGAH SRTAYTELA VRLTQKWLGCARL
Sbjct: 1   MLQTAKLKVARLARASARVLRLTAHIRLTQERLGAHSSRTAYTELACVRLTQKWLGCARL 60

Query: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPTTSDG 120
           AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRP TSDG
Sbjct: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPKTSDG 120

Query: 121 EERGADDWRKLDGTGSRW 139
           EERGADDWRKLDGTGSRW
Sbjct: 121 EERGADDWRKLDGTGSRW 138

The following BLAST results are available for this feature:
BLAST of Cucsa.079000.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4E5_CUCSA2.5e-6795.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G325170 PE=4 SV=1[more]
BLAST of Cucsa.079000.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189292|gb|KGN44525.1|3.7e-6795.65hypothetical protein Csa_7G325170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.079000Cucsa.079000gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.079000.1Cucsa.079000.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.079000.1.five_prime_UTR.1Cucsa.079000.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.079000.1.CDS.1Cucsa.079000.1.CDS.1CDS