Cucsa.079000 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.079000
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00793 : 1539204 .. 1539812 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGATTTAAAGTTGATCCCAATACAACCTTGAATAGAAATTTGCACAACTCAATTCCTCAACCACACCTTAACTTTCCAACAACACAATTCTAACTCATTCCAGTTTTAACTCATTTAAGACCAAAAaCAATAATTATTTGGTGTACCAAACCCAACGAGAACTAAGCAAAACTCACCAAGGGCTCAAATATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGGGTCTTGAGACTCATGACTCGCATACGACTTACACAGGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGGGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAATGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGAGTGGAGGCGACCGACAACTAGTGACGGTGAAGAACGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAG

mRNA sequence

ccaagatttaaagttgatcccaatacaaccttgaatagaaatttgcacaactcaattcctcaaccacaccttaactttccaacaacacaattctaactcattccagttttaactcatttaagaccaaaaacaataattatttggtgtaccaaacccaacgagaactaagcaaaactcaccaagggctcaaatatgttgcagacggctaaactgaaggtggctcggttagcaagggcttcggcTCGGGTCTTGAGACTCATGACTCGCATACGACTTACACAGGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGGGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAATGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGAGTGGAGGCGACCGACAACTAGTGACGGTGAAGAACGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAG

Coding sequence (CDS)

ATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGGGTCTTGAGACTCATGACTCGCATACGACTTACACAGGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGGGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAATGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGAGTGGAGGCGACCGACAACTAGTGACGGTGAAGAACGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAG

Protein sequence

MLQTAKLKVARLARASARVLRLMTRIRLTQERLGAHGSRTAYTELAWVRLTQKWLGCARLAYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPTTSDGEERGADDWRKLDGTGSRW*
Homology
[Close]
BLAST of Cucsa.079000 vs. TrEMBL
Match: A0A0A0K4E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G325170 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-67
Identity = 132/138 (95.65%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 1   MLQTAKLKVARLARASARVLRLMTRIRLTQERLGAHGSRTAYTELAWVRLTQKWLGCARL 60
           MLQTAKLKVARLARASARVLRL   IRLTQERLGAH SRTAYTELA VRLTQKWLGCARL
Sbjct: 1   MLQTAKLKVARLARASARVLRLTAHIRLTQERLGAHSSRTAYTELACVRLTQKWLGCARL 60

Query: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPTTSDG 120
           AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRP TSDG
Sbjct: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPKTSDG 120

Query: 121 EERGADDWRKLDGTGSRW 139
           EERGADDWRKLDGTGSRW
Sbjct: 121 EERGADDWRKLDGTGSRW 138

[Close]
BLAST of Cucsa.079000 vs. NCBI nr
Match: gi|700189292|gb|KGN44525.1| (hypothetical protein Csa_7G325170 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-67
Identity = 132/138 (95.65%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 1   MLQTAKLKVARLARASARVLRLMTRIRLTQERLGAHGSRTAYTELAWVRLTQKWLGCARL 60
           MLQTAKLKVARLARASARVLRL   IRLTQERLGAH SRTAYTELA VRLTQKWLGCARL
Sbjct: 1   MLQTAKLKVARLARASARVLRLTAHIRLTQERLGAHSSRTAYTELACVRLTQKWLGCARL 60

Query: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPTTSDG 120
           AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRP TSDG
Sbjct: 61  AYGLREAGSVKGKMARLLEKVARTEDSHDRLKLVIRARLGCVRRETFGSDEWRRPKTSDG 120

Query: 121 EERGADDWRKLDGTGSRW 139
           EERGADDWRKLDGTGSRW
Sbjct: 121 EERGADDWRKLDGTGSRW 138

The following BLAST results are available for this feature:
BLAST of Cucsa.079000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4E5_CUCSA2.5e-6795.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G325170 PE=4 SV=1[more]
BLAST of Cucsa.079000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189292|gb|KGN44525.1|3.7e-6795.65hypothetical protein Csa_7G325170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.079000.1Cucsa.079000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.079000Csa7G325170Cucumber (Chinese Long) v2cgycuB076
Cucsa.079000CSPI07G13350Wild cucumber (PI 183967)cgycpiB079
Cucsa.079000CsaV3_7G025170Cucumber (Chinese Long) v3cgycucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.079000Watermelon (97103) v2cgywmbB078
Cucsa.079000Wax gourdcgywgoB092
Cucsa.079000Cucurbita maxima (Rimu)cgycmaB0139
Cucsa.079000Cucurbita moschata (Rifu)cgycmoB0135
Cucsa.079000Melon (DHL92) v3.5.1cgymeB081
Cucsa.079000Watermelon (Charleston Gray)cgywcgB081
Cucsa.079000Watermelon (97103) v1cgywmB083
Cucsa.079000Cucurbita pepo (Zucchini)cgycpeB0137
Cucsa.079000Bottle gourd (USVL1VR-Ls)cgylsiB081
Cucsa.079000Melon (DHL92) v3.6.1cgymedB080