Cucsa.077900.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.077900.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BURP domain-containing protein 17
Location	scaffold00793 : 64258 .. 65265 (+)
Sequence length	262

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAGTCCTTTAGGAGCATGTGAAGCAGAAGGACATCAACCTACAAGTGAATCCAACTTCTTCTCCCGGTTAAGGTATGAAACCCATTTTCCAACTATGGGTTCAATATTTTCAGACTTTTTTCCAAGGAAAAATAAATGAAGATTAGCAAAAGATCAAAATTTACAAAATTCATAATCAGATGCGACAATGCTTTTGCCTTGGTTGGTTTTATTTCTCACTACTTGTGCCAATAAACGCTCTAGTAATTGTTCTTTTGTGCCAATGATATATAGTTTATTGGGTTTAGGTACGATAGGGGTAATGATAGATGTACTAATCTAACTGAGATGTCCAAGTATACCTACCCGTCCCTCTTAGCAAACCCACTCTAAGTATTTTGTTAAAAAAAaTGTAAAAATAGCATTCTATAAGCTCAAATTTTAAAATATAACGATTGTCAAAAGAGGCATCAATATCAATTTTTCTTAGGCAAAAAAaTCTCATATAAATTAACTTTCACATTTTGCAGTTTGCTGAAGGAAGAATTGAATCTTCCATGAGCGAAATTGTTTAGAAGAGGAAACAAATTGAAATGAATGATTTTATTGAAGCAACATCAAGTACAGTACAAAATTCCATCATAAAAATGGTCACCACAATTAGAGATAATATTCAAACTTCCCAAGATGATGAATTTCCAATGAAGAACAATAATAATCATAATCACTCTTCTTCTTCATCTCATACGAATCACAATCTAAACTATTTACATAGTTTCCTTTACAGTCAATAACCTAAAATTAGTTGGGAAAAAaCACCCAATTTATTTCTCTAAAAGAGACCCTTCAAAATCCCCTCCATTTTTACCAAAAGAAAAAGCTGATCAAATTCCTTTCTCCTTCAAACAACTCCCACAAATCCTATCTTCTTTCTCTTTTCCTTCAAATTCTCCTCAAGCTCAAGCAGTCAAAGAAACCCTCCAACAATGTGAGCTGAAACCCATCAAAGGAGAGACCAAATTTT

mRNA sequence

ATGTACAGTCCTTTAGGAGCATGTGAAGCAGAAGGACATCAACCTACAAGTGAATCCAACTTCTTCTCCCGGTTAAGAGACCCTTCAAAATCCCCTCCATTTTTACCAAAAGAAAAAGCTGATCAAATTCCTTTCTCCTTCAAACAACTCCCACAAATCCTATCTTCTTTCTCTTTTCCTTCAAATTCTCCTCAAGCTCAAGCAGTCAAAGAAACCCTCCAACAATGTGAGCTGAAACCCATCAAAGGAGAGACCAAATTTT

Coding sequence (CDS)

ATGTACAGTCCTTTAGGAGCATGTGAAGCAGAAGGACATCAACCTACAAGTGAATCCAACTTCTTCTCCCGGTTAAGAGACCCTTCAAAATCCCCTCCATTTTTACCAAAAGAAAAAGCTGATCAAATTCCTTTCTCCTTCAAACAACTCCCACAAATCCTATCTTCTTTCTCTTTTCCTTCAAATTCTCCTCAAGCTCAAGCAGTCAAAGAAACCCTCCAACAATGTGAGCTGAAACCCATCAAAGGAGAGACCAAATTTT

Protein sequence

MYSPLGACEAEGHQPTSESNFFSRLRDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETKFX

Homology

[Close]

BLAST of Cucsa.077900.1 vs. Swiss-Prot
Match: BNM2C_BRANA (BURP domain-containing protein BNM2C OS=Brassica napus GN=BNM2C PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-10
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 27  DPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 86
           D  K PP L +++AD IPFS   L  +L+ FS   +SPQ +A+KETLQ+C+ K I+GE K
Sbjct: 79  DLRKVPPLLTRQEADLIPFSESNLDFLLNHFSISKDSPQGEAMKETLQRCDFKAIEGEYK 138

Query: 87  F 88
           F
Sbjct: 139 F 139

[Close]

BLAST of Cucsa.077900.1 vs. Swiss-Prot
Match: BNM2A_BRANA (BURP domain-containing protein BNM2A OS=Brassica napus GN=BNM2A PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 27  DPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 86
           D  K PP L +++AD IPFS   L  +L+ FS   +SPQ +A+KETL++C+ K I+GE K
Sbjct: 80  DLRKVPPLLTRQEADLIPFSESNLDFLLNHFSISKDSPQGKAMKETLKRCDFKAIEGEYK 139

Query: 87  F 88
           F
Sbjct: 140 F 140

[Close]

BLAST of Cucsa.077900.1 vs. Swiss-Prot
Match: USPL1_ARATH (BURP domain protein USPL1 OS=Arabidopsis thaliana GN=USPL1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-09
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 27  DPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 86
           D  K PP L +++AD IPF+  +L  +L  FS   +SPQ +A+KETL  C+ K I+GE K
Sbjct: 78  DLQKLPPLLTRQQADLIPFTKSKLDFLLDHFSITKDSPQGKAIKETLGHCDAKAIEGEHK 137

Query: 87  F 88
           F
Sbjct: 138 F 138

[Close]

BLAST of Cucsa.077900.1 vs. Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-08
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 35  LPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 87
           LP+ +AD +PF+ ++LP+ILS  S P+ SP A A++ TL +CE  P  GE K
Sbjct: 54  LPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAK 105

[Close]

BLAST of Cucsa.077900.1 vs. Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-07
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 1


Query: 34  FLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 87
           FLP+ KAD IPFS K+LP+IL  F     S  A  +  TLQ CEL   KGE K
Sbjct: 392 FLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKK 444

[Close]

BLAST of Cucsa.077900.1 vs. TrEMBL
Match: A0A0A0K955_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G259360 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           RDPSKSPPFLPKEKADQI FSFKQLPQILSSF FPSNSPQAQAVKETLQQCELKPIK ET
Sbjct: 48  RDPSKSPPFLPKEKADQISFSFKQLPQILSSFHFPSNSPQAQAVKETLQQCELKPIKVET 107

Query: 86  KF 88
           KF
Sbjct: 108 KF 109

[Close]

BLAST of Cucsa.077900.1 vs. TrEMBL
Match: A0A097BU29_CITLA (BURP domain-containing protein 17 OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-23
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           RDPSKSPPFLPK+KAD IPFS KQLPQILS FSFPS+S QAQAVKETLQQCELKPIKGET
Sbjct: 125 RDPSKSPPFLPKQKADSIPFSLKQLPQILSYFSFPSDSHQAQAVKETLQQCELKPIKGET 184

Query: 86  KF 88
           KF
Sbjct: 185 KF 186

[Close]

BLAST of Cucsa.077900.1 vs. TrEMBL
Match: A0A068TZ23_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036598001 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 21  FFSRLRDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKP 80
           +FS ++DPS+SPP L +E+AD IPFS  QLP++L  FSF  +SPQA+A+++TL  CE KP
Sbjct: 91  YFS-IKDPSRSPPLLSREEADSIPFSSSQLPKLLKLFSFSDDSPQAKAIEDTLHHCEYKP 150

Query: 81  IKGETKF 88
           IKGE+KF
Sbjct: 151 IKGESKF 156

[Close]

BLAST of Cucsa.077900.1 vs. TrEMBL
Match: A5BGD6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_034298 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.3e-15
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 27  DPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 86
           DP+ SP  LPKE+AD IPFSF QLP +L  FSF   SPQA+A++ TL++C LKPIKGETK
Sbjct: 112 DPASSPRMLPKEEADSIPFSFAQLPHLLEFFSFSQGSPQARAMENTLRECXLKPIKGETK 171

Query: 87  F 88
           F
Sbjct: 172 F 172

[Close]

BLAST of Cucsa.077900.1 vs. TrEMBL
Match: V7ARI5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G024400g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           RDPSKSP   PKE+AD +PFS KQLP +L  FSF  +SPQA A++ TL++CE KPIKGE 
Sbjct: 105 RDPSKSPKLWPKEEADSLPFSSKQLPYLLKLFSFSPHSPQATAIENTLRECESKPIKGEV 164

Query: 86  KF 88
           KF
Sbjct: 165 KF 166

[Close]

BLAST of Cucsa.077900.1 vs. TAIR10
Match: AT1G49320.1 (AT1G49320.1 unknown seed protein like 1)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 27  DPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETK 86
           D  K PP L +++AD IPF+  +L  +L  FS   +SPQ +A+KETL  C+ K I+GE K
Sbjct: 78  DLQKLPPLLTRQQADLIPFTKSKLDFLLDHFSITKDSPQGKAIKETLGHCDAKAIEGEHK 137

Query: 87  F 88
           F
Sbjct: 138 F 138

[Close]

BLAST of Cucsa.077900.1 vs. TAIR10
Match: AT5G25610.1 (AT5G25610.1 BURP domain-containing protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 18/54 (33.33%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 34  FLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETKF 88
           FLP+ +A+ +PF  ++  + L  FS  + S +A+ +K+T+++CE + + GE K+
Sbjct: 204 FLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKY 257

[Close]

BLAST of Cucsa.077900.1 vs. NCBI nr
Match: gi|778730353|ref|XP_011659764.1| (PREDICTED: LOW QUALITY PROTEIN: BURP domain-containing protein 6-like [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 87/112 (77.68%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1   MYSPLGACEAEGHQPTSESNFFSRLR-------------------------DPSKSPPFL 60
           MYSPLGACEAEGHQPTSESNFFSRLR                         DPSKSPPFL
Sbjct: 1   MYSPLGACEAEGHQPTSESNFFSRLRYDRVSFTVNNLKLVGKKHPIYFSKRDPSKSPPFL 60

Query: 61  PKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETKF 88
           PKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETKF
Sbjct: 61  PKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGETKF 112

[Close]

BLAST of Cucsa.077900.1 vs. NCBI nr
Match: gi|659092391|ref|XP_008447041.1| (PREDICTED: BURP domain-containing protein 5-like [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 5.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET
Sbjct: 124 RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 183

Query: 86  KF 88
           KF
Sbjct: 184 KF 185

[Close]

BLAST of Cucsa.077900.1 vs. NCBI nr
Match: gi|700189103|gb|KGN44336.1| (hypothetical protein Csa_7G259360 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           RDPSKSPPFLPKEKADQI FSFKQLPQILSSF FPSNSPQAQAVKETLQQCELKPIK ET
Sbjct: 48  RDPSKSPPFLPKEKADQISFSFKQLPQILSSFHFPSNSPQAQAVKETLQQCELKPIKVET 107

Query: 86  KF 88
           KF
Sbjct: 108 KF 109

[Close]

BLAST of Cucsa.077900.1 vs. NCBI nr
Match: gi|694188375|gb|AIS71928.1| (BURP domain-containing protein 17 [Citrullus lanatus])

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-23
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           RDPSKSPPFLPK+KAD IPFS KQLPQILS FSFPS+S QAQAVKETLQQCELKPIKGET
Sbjct: 125 RDPSKSPPFLPKQKADSIPFSLKQLPQILSYFSFPSDSHQAQAVKETLQQCELKPIKGET 184

Query: 86  KF 88
           KF
Sbjct: 185 KF 186

[Close]

BLAST of Cucsa.077900.1 vs. NCBI nr
Match: gi|470126245|ref|XP_004299100.1| (PREDICTED: BURP domain-containing protein 3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 26  RDPSKSPPFLPKEKADQIPFSFKQLPQILSSFSFPSNSPQAQAVKETLQQCELKPIKGET 85
           R+PSKSP FLP+ +AD IPFS ++LP +L  FSF  NSPQA+A+++TL+QCE++PIKGET
Sbjct: 85  RNPSKSPRFLPRSEADSIPFSTEELPHLLEFFSFSKNSPQAKAMEDTLRQCEIEPIKGET 144

Query: 86  KF 88
           KF
Sbjct: 145 KF 146

The following BLAST results are available for this feature:

BLAST of Cucsa.077900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BNM2C_BRANA	4.4e-10	50.82	BURP domain-containing protein BNM2C OS=Brassica napus GN=BNM2C PE=2 SV=1	[more]
BNM2A_BRANA	1.7e-09	49.18	BURP domain-containing protein BNM2A OS=Brassica napus GN=BNM2A PE=2 SV=1	[more]
USPL1_ARATH	6.4e-09	47.54	BURP domain protein USPL1 OS=Arabidopsis thaliana GN=USPL1 PE=2 SV=1	[more]
BURP6_ORYSJ	7.1e-08	48.08	BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 S...	[more]
BURPH_ORYSJ	3.5e-07	52.83	BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2...	[more]

BLAST of Cucsa.077900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K955_CUCSA	1.3e-24	95.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G259360 PE=4 SV=1	[more]
A0A097BU29_CITLA	3.2e-23	90.32	BURP domain-containing protein 17 OS=Citrullus lanatus PE=2 SV=1	[more]
A0A068TZ23_COFCA	7.1e-15	59.70	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036598001 PE=4 SV=1	[more]
A5BGD6_VITVI	9.3e-15	65.57	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_034298 P...	[more]
V7ARI5_PHAVU	1.6e-14	64.52	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G024400g PE=4 SV=1	[more]

BLAST of Cucsa.077900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49320.1	3.6e-10	47.54	unknown seed protein like 1	[more]
AT5G25610.1	2.4e-06	33.33	BURP domain-containing protein	[more]

BLAST of Cucsa.077900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730353\|ref\|XP_011659764.1\|	1.7e-38	77.68	PREDICTED: LOW QUALITY PROTEIN: BURP domain-containing protein 6-like [Cucumis s...	[more]
gi\|659092391\|ref\|XP_008447041.1\|	5.2e-27	100.00	PREDICTED: BURP domain-containing protein 5-like [Cucumis melo]	[more]
gi\|700189103\|gb\|KGN44336.1\|	1.9e-24	95.16	hypothetical protein Csa_7G259360 [Cucumis sativus]	[more]
gi\|694188375\|gb\|AIS71928.1\|	4.6e-23	90.32	BURP domain-containing protein 17 [Citrullus lanatus]	[more]
gi\|470126245\|ref\|XP_004299100.1\|	1.6e-15	64.52	PREDICTED: BURP domain-containing protein 3-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004873	BURP_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.077900	Cucsa.077900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.077900.1	Cucsa.077900.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.077900.1.CDS.1	Cucsa.077900.1.CDS.1	CDS
Cucsa.077900.1.CDS.2	Cucsa.077900.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004873	BURP domain	PFAM	PF03181	BURP	coord: 26..87 score: 4.5
IPR004873	BURP domain	PROFILE	PS51277	BURP	coord: 1..88 score: 19
None	No IPR available	PANTHER	PTHR31236	FAMILY NOT NAMED	coord: 22..87 score: 5.0
None	No IPR available	PANTHER	PTHR31236:SF4	SUBFAMILY NOT NAMED	coord: 22..87 score: 5.0