Cucsa.056200.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGGATCTTGATGCAACAATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTGCCATTCTTTCCCTTTTCTATACTTATTGTTGTCATCACTTAGTTATGGTTTTCCACTGTCTCAAATTCAACCTTCATATACAGTACTACAGTAGAATCGAGTTTAAATTTATTTCCACTACTTGTAGGTCGTTATTTTGAAACCGTAATAGACTAGAATCTTATCAACTGAGAATAAGTTCTAATTATATTGAATTGTTTGGGAAGTTTCTAGATTTGATTGTTAGTTATGCTCAATTTTCTTTTTTCATGAATTCGGCATCTTATGGAACTTATCCATCACAAGCCATACTGTTGAGCATGACATCTCTTTGAATTTCTGCAAATAATTTGTTGGTGGATTCAAATTTTCTTATACTAATAGGATTTTTTTCATAACAACCTTACTTGAACAGAATTTGCTTTATAGGTTGTACAACTATGTCCTTGAGTTCTAAAATTGAAAATATTCTTATAAATTCATCATAATTACTCTGCTGATGCTAATTGCTACTTCATTTTCTTATTATTAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAGGAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTGATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACAGAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAATGCAAGAATCTTTTGTTGCCTTTGAGCGAAGTTTCTTATTAATTATTATAGTCTGCTGCCAGACTTGAAAATTGGCTGCAAATAACTTCATTTTATTTCATCATTTCTCTTATCATTTTGTTGGCGAAGGTTTTGCTTGGCTGCTAGGAACTATGGTTTGCTAAACGTGTTA TGGGATCTTGATGCAACAATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAGGAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTGATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACAGAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAATGCAAGAATCTTTTGTTGCCTTTGAGCGAAGTTTCTTATTAATTATTATAGTCTGCTGCCAGACTTGAAAATTGGCTGCAAATAACTTCATTTTATTTCATCATTTCTCTTATCATTTTGTTGGCGAAGGTTTTGCTTGGCTGCTAGGAACTATGGTTTGCTAAACGTGTTA TGGGATCTTGATGCAACAATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAGGAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTGATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACAGAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAA WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQDVSVVLLSACS*
BLAST of Cucsa.056200.1 vs. TrEMBL
Match: A0A0A0KGU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364112 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 2.4e-67 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. TrEMBL
Match: M5XWK4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003403mg PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 2.6e-29 Identity = 72/111 (64.86%), Postives = 84/111 (75.68%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. TrEMBL
Match: F6H969_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g00950 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 6.4e-28 Identity = 66/111 (59.46%), Postives = 89/111 (80.18%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. TrEMBL
Match: B9T7Y6_RICCO (Hec1 protein, putative OS=Ricinus communis GN=RCOM_0275810 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27 Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. TrEMBL
Match: F6I2P0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00940 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 3.2e-27 Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. TAIR10
Match: AT3G54630.1 (AT3G54630.1 Kinetochore protein Ndc80 (InterPro:IPR005550)) HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19 Identity = 44/111 (39.64%), Postives = 78/111 (70.27%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. NCBI nr
Match: gi|700192403|gb|KGN47607.1| (hypothetical protein Csa_6G364112 [Cucumis sativus]) HSP 1 Score: 262.7 bits (670), Expect = 3.4e-67 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. NCBI nr
Match: gi|778680142|ref|XP_004149971.2| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus]) HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37 Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. NCBI nr
Match: gi|659077518|ref|XP_008439248.1| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo]) HSP 1 Score: 159.1 bits (401), Expect = 5.4e-36 Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. NCBI nr
Match: gi|778680904|ref|XP_011651417.1| (PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus]) HSP 1 Score: 151.4 bits (381), Expect = 1.1e-33 Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 1
BLAST of Cucsa.056200.1 vs. NCBI nr
Match: gi|645223942|ref|XP_008218874.1| (PREDICTED: probable kinetochore protein ndc80 [Prunus mume]) HSP 1 Score: 139.4 bits (350), Expect = 4.4e-30 Identity = 73/111 (65.77%), Postives = 85/111 (76.58%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
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