Cucsa.056200 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.056200
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Kinetochore NDC80
Location	scaffold00602 : 370111 .. 371190 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGATCTTGATGCAACAATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTGCCATTCTTTCCCTTTTCTATACTTATTGTTGTCATCACTTAGTTATGGTTTTCCACTGTCTCAAATTCAACCTTCATATACAGTACTACAGTAGAATCGAGTTTAAATTTATTTCCACTACTTGTAGGTCGTTATTTTGAAACCGTAATAGACTAGAATCTTATCAACTGAGAATAAGTTCTAATTATATTGAATTGTTTGGGAAGTTTCTAGATTTGATTGTTAGTTATGCTCAATTTTCTTTTTTCATGAATTCGGCATCTTATGGAACTTATCCATCACAAGCCATACTGTTGAGCATGACATCTCTTTGAATTTCTGCAAATAATTTGTTGGTGGATTCAAATTTTCTTATACTAATAGGATTTTTTTCATAACAACCTTACTTGAACAGAATTTGCTTTATAGGTTGTACAACTATGTCCTTGAGTTCTAAAATTGAAAATATTCTTATAAATTCATCATAATTACTCTGCTGATGCTAATTGCTACTTCATTTTCTTATTATTAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAGGAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTGATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACAGAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAATGCAAGAATCTTTTGTTGCCTTTGAGCGAAGTTTCTTATTAATTATTATAGTCTGCTGCCAGACTTGAAAATTGGCTGCAAATAACTTCATTTTATTTCATCATTTCTCTTATCATTTTGTTGGCGAAGGTTTTGCTTGGCTGCTAGGAACTATGGTTTGCTAAACGTGTTA

mRNA sequence

TGGGATCTTGATGCAACAATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAGGAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTGATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACAGAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAATGCAAGAATCTTTTGTTGCCTTTGAGCGAAGTTTCTTATTAATTATTATAGTCTGCTGCCAGACTTGAAAATTGGCTGCAAATAACTTCATTTTATTTCATCATTTCTCTTATCATTTTGTTGGCGAAGGTTTTGCTTGGCTGCTAGGAACTATGGTTTGCTAAACGTGTTA

Coding sequence (CDS)

TGGGATCTTGATGCAACAATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAGGAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTGATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACAGAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAA

Protein sequence

WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQDVSVVLLSACS*

Homology

[Close]

BLAST of Cucsa.056200 vs. TrEMBL
Match: A0A0A0KGU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364112 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA
Sbjct: 137 WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 196

Query: 61  LNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQD 120
           LNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQD
Sbjct: 197 LNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQD 256

Query: 121 VSVVLLSACS 131
           VSVVLLSACS
Sbjct: 257 VSVVLLSACS 266

[Close]

BLAST of Cucsa.056200 vs. TrEMBL
Match: M5XWK4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003403mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-29
Identity = 72/111 (64.86%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLD  + + FKELET+AMECNQAMRRLK  N  QY LNAK ST  DVMGIDYK  +KPA
Sbjct: 343 WDLDTMLSHKFKELETLAMECNQAMRRLKLGNGFQYVLNAKGSTAADVMGIDYKLTLKPA 402

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIK 109
           LNS++   K SS  +LE LISL+QQSSE SA IE + N IA+LQSH DE++
Sbjct: 403 LNSYSDDIKKSSVEKLEELISLQQQSSELSATIEGKRNFIATLQSHIDEVE 453

[Close]

BLAST of Cucsa.056200 vs. TrEMBL
Match: F6H969_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g00950 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.4e-28
Identity = 66/111 (59.46%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLD T+G+ FKELE +++ECNQA+RRLK  N  QY LNAK S+PT+V+GIDYK+ +KPA
Sbjct: 338 WDLDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAKGSSPTEVLGIDYKSALKPA 397

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIK 109
           L+SFA     SS  +LE LISL+QQS E++AKIE++ N +A+LQS +DE++
Sbjct: 398 LDSFADDINKSSMSKLEELISLQQQSVENAAKIEAKRNRLAALQSRSDEVE 448

[Close]

BLAST of Cucsa.056200 vs. TrEMBL
Match: B9T7Y6_RICCO (Hec1 protein, putative OS=Ricinus communis GN=RCOM_0275810 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDL+  +G+ +KELET++M+CNQA+RRLK  N  QY LNAK STPT+VMG+DYK+++KP 
Sbjct: 340 WDLNTEIGHKYKELETLSMDCNQAVRRLKLGNGFQYLLNAKGSTPTEVMGVDYKSVVKPG 399

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIK 109
           L SFA   K SS  +LE  ISL+Q SSE +AK E + N IA+LQSH DE++
Sbjct: 400 LASFADDVKRSSMAKLEEFISLQQGSSEFTAKTEGKKNRIAALQSHIDEVE 450

[Close]

BLAST of Cucsa.056200 vs. TrEMBL
Match: F6I2P0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00940 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-27
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLD T+G+ FKELE +++ECNQA+RRLK  N  QY LNAK S+P +V+GIDYK+ +KPA
Sbjct: 552 WDLDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAKGSSPAEVLGIDYKSTLKPA 611

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIK 109
           L+SFA     SS  +LE LISL+QQS E++AKIE++ N +A+LQS +DE++
Sbjct: 612 LDSFADDINKSSMSKLEELISLQQQSVENAAKIEAKRNRLAALQSSSDEVE 662

[Close]

BLAST of Cucsa.056200 vs. TAIR10
Match: AT3G54630.1 (AT3G54630.1 Kinetochore protein Ndc80 (InterPro:IPR005550))

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19
Identity = 44/111 (39.64%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           W+L++ + N F +++T+A++CNQA+RRLK D   Q+++N +  TP  VMG+DYK+++KPA
Sbjct: 343 WELNSQIRNQFHQIQTLAIDCNQALRRLKLD--IQFAVNERGETPAAVMGVDYKSVVKPA 402

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIK 109
           L S     K SS  ++E L++L+   SE ++KIES+ + + S+Q   ++++
Sbjct: 403 LCSLCDGIKGSSAEKVEELVTLQHHKSEMASKIESKRSLLGSIQLQINDLE 451

[Close]

BLAST of Cucsa.056200 vs. NCBI nr
Match: gi|700192403|gb|KGN47607.1| (hypothetical protein Csa_6G364112 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.4e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA
Sbjct: 137 WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 196

Query: 61  LNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQD 120
           LNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQD
Sbjct: 197 LNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRITERYWHLIQD 256

Query: 121 VSVVLLSACS 131
           VSVVLLSACS
Sbjct: 257 VSVVLLSACS 266

[Close]

BLAST of Cucsa.056200 vs. NCBI nr
Match: gi|778680142|ref|XP_004149971.2| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLDAT+GN FKELE +AMECNQAMRRLK D+CHQY LNAK STP DVMGIDYKT +KPA
Sbjct: 341 WDLDATLGNKFKELEAIAMECNQAMRRLKLDSCHQYVLNAKGSTPADVMGIDYKTTLKPA 400

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE 107
           L+SFA   + SS M+LE LISLRQQSSE++AKIES+ +HIASLQSH +E
Sbjct: 401 LDSFAEDIRRSSMMKLEELISLRQQSSENTAKIESKRDHIASLQSHVNE 449

[Close]

BLAST of Cucsa.056200 vs. NCBI nr
Match: gi|659077518|ref|XP_008439248.1| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 5.4e-36
Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLDAT+GN FKELE +AMECNQAMRRLK D+CHQY LNAK STP DVMGIDYK+ +KPA
Sbjct: 341 WDLDATLGNKFKELEAIAMECNQAMRRLKLDSCHQYVLNAKGSTPADVMGIDYKSTVKPA 400

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE 107
           L+SFA   + SS M+LE LISLRQQSSE++AKI+S+ N IASLQSH +E
Sbjct: 401 LDSFAEDIRRSSMMKLEELISLRQQSSENTAKIDSKRNQIASLQSHINE 449

[Close]

BLAST of Cucsa.056200 vs. NCBI nr
Match: gi|778680904|ref|XP_011651417.1| (PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-33
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 1


Query: 2   DLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPAL 61
           DLDAT+GN FK LE +AMECNQAMRRLK D+CHQY LNAK STP DVMGIDYKT +KPAL
Sbjct: 28  DLDATLGNTFKGLEAIAMECNQAMRRLKLDSCHQYVLNAKGSTPADVMGIDYKTTLKPAL 87

Query: 62  NSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE 107
           +SFA   + SS M+LE LISLRQQS+E++AKIES+ +H+ASLQ H +E
Sbjct: 88  DSFAEDIRRSSMMKLEELISLRQQSNENTAKIESKRSHMASLQPHINE 135

[Close]

BLAST of Cucsa.056200 vs. NCBI nr
Match: gi|645223942|ref|XP_008218874.1| (PREDICTED: probable kinetochore protein ndc80 [Prunus mume])

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-30
Identity = 73/111 (65.77%), Postives = 85/111 (76.58%), Query Frame = 1


Query: 1   WDLDATMGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPA 60
           WDLD  + + FKELET+AMECNQAMRRLK  N  QY LNAK STP DVMGIDYK  +KPA
Sbjct: 343 WDLDTMLSHKFKELETLAMECNQAMRRLKLGNGFQYVLNAKGSTPADVMGIDYKLTLKPA 402

Query: 61  LNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIK 109
           LNS++   K SS  +LE LISL+QQSSE SA IE + N IA+LQSH DE++
Sbjct: 403 LNSYSDDIKKSSVEKLEELISLQQQSSELSATIEGKRNFIATLQSHIDEVE 453

The following BLAST results are available for this feature:

BLAST of Cucsa.056200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGU7_CUCSA	2.4e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364112 PE=4 SV=1	[more]
M5XWK4_PRUPE	2.6e-29	64.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003403mg PE=4 SV=1	[more]
F6H969_VITVI	6.4e-28	59.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g00950 PE=4 SV=...	[more]
B9T7Y6_RICCO	1.9e-27	58.56	Hec1 protein, putative OS=Ricinus communis GN=RCOM_0275810 PE=4 SV=1	[more]
F6I2P0_VITVI	3.2e-27	58.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00940 PE=4 SV=...	[more]

BLAST of Cucsa.056200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54630.1	2.2e-19	39.64	Kinetochore protein Ndc80 (InterPro:IPR005550)	[more]

BLAST of Cucsa.056200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192403\|gb\|KGN47607.1\|	3.4e-67	100.00	hypothetical protein Csa_6G364112 [Cucumis sativus]	[more]
gi\|778680142\|ref\|XP_004149971.2\|	3.7e-37	75.23	PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus]	[more]
gi\|659077518\|ref\|XP_008439248.1\|	5.4e-36	73.39	PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo]	[more]
gi\|778680904\|ref\|XP_011651417.1\|	1.1e-33	71.30	PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus]	[more]
gi\|645223942\|ref\|XP_008218874.1\|	4.4e-30	65.77	PREDICTED: probable kinetochore protein ndc80 [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.056200.1	Cucsa.056200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.056200	CSPI06G19280	Wild cucumber (PI 183967)	cgycpiB042
Cucsa.056200	CsaV3_6G032180	Cucumber (Chinese Long) v3	cgycucB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.056200	Cucumber (Chinese Long) v2	cgycuB041
Cucsa.056200	Melon (DHL92) v3.5.1	cgymeB040
Cucsa.056200	Watermelon (Charleston Gray)	cgywcgB046
Cucsa.056200	Watermelon (97103) v1	cgywmB045
Cucsa.056200	Cucurbita pepo (Zucchini)	cgycpeB0068
Cucsa.056200	Bottle gourd (USVL1VR-Ls)	cgylsiB045
Cucsa.056200	Melon (DHL92) v3.6.1	cgymedB040
Cucsa.056200	Silver-seed gourd	carcgyB0168
Cucsa.056200	Silver-seed gourd	carcgyB0779
Cucsa.056200	Watermelon (97103) v2	cgywmbB045
Cucsa.056200	Wax gourd	cgywgoB046
Cucsa.056200	Cucurbita maxima (Rimu)	cgycmaB0074
Cucsa.056200	Cucurbita moschata (Rifu)	cgycmoB0068
Cucsa.056200	Cucurbita moschata (Rifu)	cgycmoB0069