Cucsa.042170.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.042170.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear transcription factor Y protein
Location	scaffold00540 : 676228 .. 676667 (+)
Sequence length	331

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCcATGCAAAAATATCTGACGACACCAAAGAGACCATCTAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCT

mRNA sequence

ATGCTTGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCT

Coding sequence (CDS)

ATGCTTGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCT

Protein sequence

MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSX

Homology

[Close]

BLAST of Cucsa.042170.1 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-27
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISF+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E  
Sbjct: 93  ECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD 152

Query: 63  ---SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGG--YYGGGGS 111
              ++R EP   R    G  +G   P       G    GM D    MGG  YY  G S
Sbjct: 153 RGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSS 210

[Close]

BLAST of Cucsa.042170.1 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-23
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  
Sbjct: 92  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGE 151

Query: 63  R 64
           R
Sbjct: 152 R 152

[Close]

BLAST of Cucsa.042170.1 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 60
           M ECVSE+ISF+T EA+++CQ+E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E
Sbjct: 59  MQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIE 118

Query: 61  SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAM---GGYYGGGG 110
             RT   L R     PQ G           G V     DA+   GG+YGGGG
Sbjct: 119 GERTG--LGR-----PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Cucsa.042170.1 vs. Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E  
Sbjct: 64  ECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG- 123

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGH 93
            T+   +       + G  S  GQ  Q+ H
Sbjct: 124 DTKGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of Cucsa.042170.1 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 7.3e-18
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 61
           ECVSE+ISFITSEA+++CQRE+RKT+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 72  ECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129

[Close]

BLAST of Cucsa.042170.1 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.4e-54
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           RTEPMLRRNVDYG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGS 228

[Close]

BLAST of Cucsa.042170.1 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-53
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 5   VSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 64
           ++ YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT
Sbjct: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 164

Query: 65  EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS
Sbjct: 165 EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 210

[Close]

BLAST of Cucsa.042170.1 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 96  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 155

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 156 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 212

[Close]

BLAST of Cucsa.042170.1 vs. TrEMBL
Match: A0A0E3N6S2_GOSBA (Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 73  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 132

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 133 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 189

[Close]

BLAST of Cucsa.042170.1 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 88  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 147

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 148 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 204

[Close]

BLAST of Cucsa.042170.1 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-28
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISF+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E  
Sbjct: 93  ECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD 152

Query: 63  ---SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGG--YYGGGGS 111
              ++R EP   R    G  +G   P       G    GM D    MGG  YY  G S
Sbjct: 153 RGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSS 210

[Close]

BLAST of Cucsa.042170.1 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  
Sbjct: 92  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGE 151

Query: 63  R 64
           R
Sbjct: 152 R 152

[Close]

BLAST of Cucsa.042170.1 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 60
           M ECVSE+ISF+T EA+++CQ+E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E
Sbjct: 59  MQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIE 118

Query: 61  SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAM---GGYYGGGG 110
             RT   L R     PQ G           G V     DA+   GG+YGGGG
Sbjct: 119 GERTG--LGR-----PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Cucsa.042170.1 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-19
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E  
Sbjct: 64  ECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG- 123

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGH 93
            T+   +       + G  S  GQ  Q+ H
Sbjct: 124 DTKGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of Cucsa.042170.1 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-19
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1   MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 60
           M ECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++YI+PL V+L RYRE E
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of Cucsa.042170.1 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 6.3e-54
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           RTEPMLRRNVDYG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGS 228

[Close]

BLAST of Cucsa.042170.1 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 5   VSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 64
           ++ YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT
Sbjct: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 164

Query: 65  EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS
Sbjct: 165 EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 210

[Close]

BLAST of Cucsa.042170.1 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 7.0e-53
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES- 62
           ECVSEYISFIT EANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESES 
Sbjct: 90  ECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 149

Query: 63  -IRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGG 110
            IRTEP+LRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGG
Sbjct: 150 RIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGG 198

[Close]

BLAST of Cucsa.042170.1 vs. NCBI nr
Match: gi|823266462|ref|XP_012465928.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 88  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 147

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 148 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 204

[Close]

BLAST of Cucsa.042170.1 vs. NCBI nr
Match: gi|805305825|gb|AKB11452.1| (leafy cotyledon 1A [Gossypium barbadense])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 73  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 132

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 133 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 189

The following BLAST results are available for this feature:

BLAST of Cucsa.042170.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB9_ARATH	8.6e-27	56.78	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1...	[more]
NFYB6_ARATH	2.0e-23	83.61	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1...	[more]
NFYB2_ARATH	1.7e-19	48.21	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB8_ARATH	3.3e-18	50.00	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2...	[more]
NFYB3_ORYSJ	7.3e-18	67.24	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]

BLAST of Cucsa.042170.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U1_CUCSA	4.4e-54	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1	[more]
A0A0A0L4W1_CUCSA	1.3e-53	97.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1	[more]
A0A0B0PGM2_GOSAR	4.9e-37	69.75	Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN...	[more]
A0A0E3N6S2_GOSBA	4.9e-37	69.75	Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1	[more]
A0A0D2SEP9_GOSRA	4.9e-37	69.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1	[more]

BLAST of Cucsa.042170.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21970.1	4.8e-28	56.78	Histone superfamily protein	[more]
AT5G47670.1	1.1e-24	83.61	nuclear factor Y, subunit B6	[more]
AT5G47640.1	9.8e-21	48.21	nuclear factor Y, subunit B2	[more]
AT2G37060.1	1.8e-19	50.00	nuclear factor Y, subunit B8	[more]
AT3G53340.1	4.1e-19	65.00	nuclear factor Y, subunit B10	[more]

BLAST of Cucsa.042170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200905\|gb\|KGN56038.1\|	6.3e-54	97.22	hypothetical protein Csa_3G049440 [Cucumis sativus]	[more]
gi\|700200906\|gb\|KGN56039.1\|	1.8e-53	97.17	hypothetical protein Csa_3G055940 [Cucumis sativus]	[more]
gi\|659096616\|ref\|XP_008449191.1\|	7.0e-53	95.41	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]
gi\|823266462\|ref\|XP_012465928.1\|	7.0e-37	69.75	PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii]	[more]
gi\|805305825\|gb\|AKB11452.1\|	7.0e-37	69.75	leafy cotyledon 1A [Gossypium barbadense]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0033613	activating transcription factor binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.042170	Cucsa.042170	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.042170.1	Cucsa.042170.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.042170.1.CDS.1	Cucsa.042170.1.CDS.1	CDS
Cucsa.042170.1.CDS.2	Cucsa.042170.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 4..20 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 1..37 score: 2.2
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 1..64 score: 2.4
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 1..65 score: 5.24
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 39..57 score: 2.2E-16coord: 1..19 score: 2.2E-16coord: 20..38 score: 2.2
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 3..104 score: 1.2
None	No IPR available	PANTHER	PTHR11064:SF20	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATED	coord: 3..104 score: 1.2