Cucsa.042170 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.042170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear transcription factor Y protein
Location	scaffold00540 : 676228 .. 676667 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCcATGCAAAAATATCTGACGACACCAAAGAGACCATCTAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCT

mRNA sequence

ATGCTTGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCT

Coding sequence (CDS)

ATGCTTGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCT

Protein sequence

MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSX

Homology

[Close]

BLAST of Cucsa.042170 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-27
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISF+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E  
Sbjct: 93  ECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD 152

Query: 63  ---SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGG--YYGGGGS 111
              ++R EP   R    G  +G   P       G    GM D    MGG  YY  G S
Sbjct: 153 RGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSS 210

[Close]

BLAST of Cucsa.042170 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-23
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  
Sbjct: 92  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGE 151

Query: 63  R 64
           R
Sbjct: 152 R 152

[Close]

BLAST of Cucsa.042170 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 60
           M ECVSE+ISF+T EA+++CQ+E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E
Sbjct: 59  MQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIE 118

Query: 61  SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAM---GGYYGGGG 110
             RT   L R     PQ G           G V     DA+   GG+YGGGG
Sbjct: 119 GERTG--LGR-----PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Cucsa.042170 vs. Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E  
Sbjct: 64  ECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG- 123

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGH 93
            T+   +       + G  S  GQ  Q+ H
Sbjct: 124 DTKGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of Cucsa.042170 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 7.3e-18
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 61
           ECVSE+ISFITSEA+++CQRE+RKT+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 72  ECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129

[Close]

BLAST of Cucsa.042170 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.4e-54
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           RTEPMLRRNVDYG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGS 228

[Close]

BLAST of Cucsa.042170 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-53
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 5   VSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 64
           ++ YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT
Sbjct: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 164

Query: 65  EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS
Sbjct: 165 EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 210

[Close]

BLAST of Cucsa.042170 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 96  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 155

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 156 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 212

[Close]

BLAST of Cucsa.042170 vs. TrEMBL
Match: A0A0E3N6S2_GOSBA (Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 73  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 132

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 133 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 189

[Close]

BLAST of Cucsa.042170 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 88  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 147

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 148 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 204

[Close]

BLAST of Cucsa.042170 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-28
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISF+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E  
Sbjct: 93  ECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD 152

Query: 63  ---SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGG--YYGGGGS 111
              ++R EP   R    G  +G   P       G    GM D    MGG  YY  G S
Sbjct: 153 RGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSS 210

[Close]

BLAST of Cucsa.042170 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  
Sbjct: 92  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGE 151

Query: 63  R 64
           R
Sbjct: 152 R 152

[Close]

BLAST of Cucsa.042170 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 60
           M ECVSE+ISF+T EA+++CQ+E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E
Sbjct: 59  MQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIE 118

Query: 61  SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAM---GGYYGGGG 110
             RT   L R     PQ G           G V     DA+   GG+YGGGG
Sbjct: 119 GERTG--LGR-----PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Cucsa.042170 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-19
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E  
Sbjct: 64  ECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG- 123

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGH 93
            T+   +       + G  S  GQ  Q+ H
Sbjct: 124 DTKGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of Cucsa.042170 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-19
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1   MLECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 60
           M ECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++YI+PL V+L RYRE E
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of Cucsa.042170 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 6.3e-54
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 62
           ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 63  RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           RTEPMLRRNVDYG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGS 228

[Close]

BLAST of Cucsa.042170 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 5   VSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 64
           ++ YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT
Sbjct: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 164

Query: 65  EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 111
           EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS
Sbjct: 165 EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGS 210

[Close]

BLAST of Cucsa.042170 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 7.0e-53
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES- 62
           ECVSEYISFIT EANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESES 
Sbjct: 90  ECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 149

Query: 63  -IRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGG 110
            IRTEP+LRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGG
Sbjct: 150 RIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGG 198

[Close]

BLAST of Cucsa.042170 vs. NCBI nr
Match: gi|823266462|ref|XP_012465928.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 88  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 147

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 148 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 204

[Close]

BLAST of Cucsa.042170 vs. NCBI nr
Match: gi|805305825|gb|AKB11452.1| (leafy cotyledon 1A [Gossypium barbadense])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 3   ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-- 62
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E  
Sbjct: 73  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 132

Query: 63  --SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY-----GGGG 110
             S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GGGG
Sbjct: 133 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGG 189

The following BLAST results are available for this feature:

BLAST of Cucsa.042170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB9_ARATH	8.6e-27	56.78	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1...	[more]
NFYB6_ARATH	2.0e-23	83.61	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1...	[more]
NFYB2_ARATH	1.7e-19	48.21	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB8_ARATH	3.3e-18	50.00	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2...	[more]
NFYB3_ORYSJ	7.3e-18	67.24	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]

BLAST of Cucsa.042170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U1_CUCSA	4.4e-54	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1	[more]
A0A0A0L4W1_CUCSA	1.3e-53	97.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1	[more]
A0A0B0PGM2_GOSAR	4.9e-37	69.75	Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN...	[more]
A0A0E3N6S2_GOSBA	4.9e-37	69.75	Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1	[more]
A0A0D2SEP9_GOSRA	4.9e-37	69.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1	[more]

BLAST of Cucsa.042170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21970.1	4.8e-28	56.78	Histone superfamily protein	[more]
AT5G47670.1	1.1e-24	83.61	nuclear factor Y, subunit B6	[more]
AT5G47640.1	9.8e-21	48.21	nuclear factor Y, subunit B2	[more]
AT2G37060.1	1.8e-19	50.00	nuclear factor Y, subunit B8	[more]
AT3G53340.1	4.1e-19	65.00	nuclear factor Y, subunit B10	[more]

BLAST of Cucsa.042170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200905\|gb\|KGN56038.1\|	6.3e-54	97.22	hypothetical protein Csa_3G049440 [Cucumis sativus]	[more]
gi\|700200906\|gb\|KGN56039.1\|	1.8e-53	97.17	hypothetical protein Csa_3G055940 [Cucumis sativus]	[more]
gi\|659096616\|ref\|XP_008449191.1\|	7.0e-53	95.41	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]
gi\|823266462\|ref\|XP_012465928.1\|	7.0e-37	69.75	PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii]	[more]
gi\|805305825\|gb\|AKB11452.1\|	7.0e-37	69.75	leafy cotyledon 1A [Gossypium barbadense]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0033613	activating transcription factor binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.042170.1	Cucsa.042170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 4..20 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 1..37 score: 2.2
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 1..64 score: 2.4
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 1..65 score: 5.24
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 39..57 score: 2.2E-16coord: 1..19 score: 2.2E-16coord: 20..38 score: 2.2
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 3..104 score: 1.2
None	No IPR available	PANTHER	PTHR11064:SF20	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATED	coord: 3..104 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.042170	Csa3G049440	Cucumber (Chinese Long) v2	cgycuB014

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.042170	Cucumber (Chinese Long) v3	cgycucB017
Cucsa.042170	Watermelon (97103) v2	cgywmbB016
Cucsa.042170	Wax gourd	cgywgoB016
Cucsa.042170	Wax gourd	cgywgoB017
Cucsa.042170	Cucurbita maxima (Rimu)	cgycmaB0029
Cucsa.042170	Cucurbita maxima (Rimu)	cgycmaB0030
Cucsa.042170	Cucurbita maxima (Rimu)	cgycmaB0032
Cucsa.042170	Cucurbita maxima (Rimu)	cgycmaB0033
Cucsa.042170	Cucurbita moschata (Rifu)	cgycmoB0027
Cucsa.042170	Cucurbita moschata (Rifu)	cgycmoB0030
Cucsa.042170	Wild cucumber (PI 183967)	cgycpiB015
Cucsa.042170	Melon (DHL92) v3.5.1	cgymeB013
Cucsa.042170	Watermelon (Charleston Gray)	cgywcgB018
Cucsa.042170	Watermelon (97103) v1	cgywmB017
Cucsa.042170	Cucurbita pepo (Zucchini)	cgycpeB0026
Cucsa.042170	Cucurbita pepo (Zucchini)	cgycpeB0027
Cucsa.042170	Cucurbita pepo (Zucchini)	cgycpeB0028
Cucsa.042170	Cucurbita pepo (Zucchini)	cgycpeB0029
Cucsa.042170	Bottle gourd (USVL1VR-Ls)	cgylsiB014
Cucsa.042170	Bottle gourd (USVL1VR-Ls)	cgylsiB015
Cucsa.042170	Melon (DHL92) v3.6.1	cgymedB016
Cucsa.042170	Silver-seed gourd	carcgyB0007
Cucsa.042170	Silver-seed gourd	carcgyB0404
Cucsa.042170	Silver-seed gourd	carcgyB0660