Cucsa.011040.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.011040.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial inner membrane protease ATP23
Location	scaffold00154 : 369562 .. 372095 (+)
Sequence length	793

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGAAACTTAGAGGCTTAAACATGGCGGAAGAATCCACGCCGGAACCTGGATCAAATCGTTCGTATTCTTCCGTCAACGGTGGCCGGACTAAGGAGGAATGCGAGGATATGATTCGAAGAAGTCTCCGAAGTATGAATTACAACTATATTCTTTCCTCTTCATTCGTTTCCTCAACATCTGGGACCCTAAACCCCAACATATTTTCGGGGTTTAGGGTTTTACGACTTTCCTTAATTTCCAGGTTATTTGAAAAATTAGAACTTCCTGTCTTGTTCTCACGGGTCATTCTATCTATTTCTGCGTCTCTCAGCTCCGATGGTGAAATTCTTGATGGAGCACTTGGAGAAATCTGGATGTGGGATTGGGGATAGGTTTATTAAGGCTGTTCATTGCGAGAAGCAGATCAGTGGTGGTTATGTTCGTGGTGAAGGGGTAATTATAATCTCCTCTCTTTGTTTCTGCATATGCTTTTAAATGAATACCTTACTTTTTACCTTATCGTTGAGAATGAATAAACAAAATTTGGATAGTTAGAAAAGGAATGGGGAGGAAGAGACTGTTGAACACTGATTTCTTTGCTGTGCCCTGTTTTTtGGTTTTAGATAATGGTGTGTAGTAACCACATGAACATTCAAGATGAGGTGAACCAAGTAGTAATTCATGAGCTTATTCATGCTTTTGATGATTGTCGAGCGGCAAACTTGGATTGGGCTAATTGTACTCATCATGCTTGCAGTGAGGTGTGCATCTACATTTAGCCATTTAACCATTTCCTTTCACAAATTGAGTCTTTTTtCCCCATATGTTTACATTATTTTGTTTTGGGACTTTCTAACGTACATACATTTGGAATTTAGATTCGTGCTGGACATTTAAGTGGTGATTGCCACTATAAACGGGAACTATTGCGAGGTTTCATGAAATTACGAGGCCATGAGCAAGTATGATTTTCTTTCACTTCCTTTTTGGAAAGAACATAATAGTCTTACCTCTTATTCGCGTCTAAATATGAGCATGAGTTTGTAGTCCATGATATCTCAAATTTGATTTCTTTGACACTGTTCATACCCTCTTGCTTAAATAGGTGAACAGCATTCATGAAAATGCTTAGAGTAGTGATAAATATTTGGCGTTGGATCAAGGACTAATGAACATGAATCACTTGGAAGTTGTAAATTTTTTtGTACCTTTTGAGCTAATTTCTTTGCACTCTGCTGATAGATAAGTTACACTTTTACGTTTCTCAAGTCTTTATGTTACACTAGAGAACTTTTCTCATGGTAGAACTTAAAATCTGCGTGTATGCTCATGCTAACTTGAATCTGATCTTGGAAATGAATATGATTGTATAAATGTTTTCAGTCATTCTATCTTTTAACTTTTGGCTTGTAATCTTTAGTCACAATAAGTATTTTTATGCTCAAGTATTCACATTTCCCTCGGCCCTCGGCTAAACTAGCTCAATTTTTTtATATCCGTAAGTGTTTGGACCAGCTTACGTGTACCTTGACTAATCTCACGGACAACCGATCTGACCTTACAACATTTGGGTATAAGGAAACTCCTAGGAAATTAATTCCTAGTAAGTGGCTACCATGAATTAAACTCATGACCTCTTAGTTAGTTTTCCTATTTATCACTAGGTTAATTCATGATGGTTTCTAAACTGAACAAGAGGAGTGAGAGTGAAAGTCCTATTTTTTGGATAGGAGAATGAAACATGATATTAGCAGGATCTTTTGGGAAGACTTATCTTGAAGCCATGTGTATTGAGTTCATTTCTGTTTTTtCTCAATGGCTAATATTTGGAAGAAGCCTAGGTTTATGCAACTCTAAAATTAAGAGGTGCAATTGGGGGACTATTATAAGTCGTTTTGGTTGTTATATGTAGGAGAGTGGCGATGGACCGGTGACCTAACCACGTGTGGATGTTTGATGATCAGCATTTTTTATTCTTTCTTCTAACAAAACCTGTTCTCACATTTTTCTTTTCTTCTTCATCCATGAACATTAGGTGAACTACATTCCATTGAGCTCTTTTGGATAGGTTTCCATTGACTTTTTTCTTTTCTATAGGAATGTGTGAGAAGAAGAGTCATGAAATCACTGGTGGCTAATCCTTACTGCCCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTATGGGATGTTTGTTATAATGATACACAGCCATTTGATAGAGCTCCCTAAAACTTGGAATATAGTCATTTCATCAACCAAGAACAAAGCAGCCACTGCTCCTAATTTAATGGTGCTGTGCCAAAAAGAACAACAGGTTTTCTTCCCAAGTTTTAGATTGCTTAAATTTTGGAGAGAATTTATTTGCCTTGAGCAGTTCGATTACGATCGATGGTTTTATTCCATTATAGACATTCCCATTTTTGTTGCTTCTGATTCCATACCATTTATAATAGATAAACTTATTGCAGAATACATCTAAATGTGTTGAAGCAAATAAAACGTGATTTAGCTCCTCTTTTGAAAGTATGAGAAGTTTAACATTTGTGAA

mRNA sequence

AAATTGAAACTTAGAGGCTTAAACATGGCGGAAGAATCCACGCCGGAACCTGGATCAAATCGTTCGTATTCTTCCGTCAACGGTGGCCGGACTAAGGAGGAATGCGAGGATATGATTCGAAGAAGTCTCCGAACTCCGATGGTGAAATTCTTGATGGAGCACTTGGAGAAATCTGGATGTGGGATTGGGGATAGGTTTATTAAGGCTGTTCATTGCGAGAAGCAGATCAGTGGTGGTTATGTTCGTGGTGAAGGGATTCGTGCTGGACATTTAAGTGGTGATTGCCACTATAAACGGGAACTATTGCGAGGTTTCATGAAATTACGAGGCCATGAGCAAGAATGTGTGAGAAGAAGAGTCATGAAATCACTGGTGGCTAATCCTTACTGCCCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTATGGGATGTTTGTTATAATGATACACAGCCATTTGATAGAGCTCCCTAAAACTTGGAATATAGTCATTTCATCAACCAAGAACAAAGCAGCCACTGCTCCTAATTTAATGGTGCTGTGCCAAAAAGAACAACAGGTTTTCTTCCCAAGTTTTAGATTGCTTAAATTTTGGAGAGAATTTATTTGCCTTGAGCAGTTCGATTACGATCGATGGTTTTATTCCATTATAGACATTCCCATTTTTGTTGCTTCTGATTCCATACCATTTATAATAGATAAACTTATTGCAGAATACATCTAAATGTGTTGAAGCAAATAAAACGTGATTTAGCTCCTCTTTTGAAAGTATGAGAAGTTTAACATTTGTGAA

Coding sequence (CDS)

ATGGCGGAAGAATCCACGCCGGAACCTGGATCAAATCGTTCGTATTCTTCCGTCAACGGTGGCCGGACTAAGGAGGAATGCGAGGATATGATTCGAAGAAGTCTCCGAACTCCGATGGTGAAATTCTTGATGGAGCACTTGGAGAAATCTGGATGTGGGATTGGGGATAGGTTTATTAAGGCTGTTCATTGCGAGAAGCAGATCAGTGGTGGTTATGTTCGTGGTGAAGGGATTCGTGCTGGACATTTAAGTGGTGATTGCCACTATAAACGGGAACTATTGCGAGGTTTCATGAAATTACGAGGCCATGAGCAAGAATGTGTGAGAAGAAGAGTCATGAAATCACTGGTGGCTAATCCTTACTGCCCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTATGGGATGTTTGTTATAATGATACACAGCCATTTGATAGAGCTCCCTAA

Protein sequence

MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIKAVHCEKQISGGYVRGEGIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAVWDVCYNDTQPFDRAP*

Homology

[Close]

BLAST of Cucsa.011040.2 vs. Swiss-Prot
Match: ATP23_CRYNJ (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATP23 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-13
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 63  HCEKQISGGYVRGEG---IRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVAN 122
           HC  ++  G +R      IRA +LSGDC + RE+ RGF       Q CV+RR + S++AN
Sbjct: 137 HCRFKVDWGNLRHHACSEIRAANLSGDCRFTREVKRGFYAFNKQHQACVKRRAILSVLAN 196

Query: 123 PYC--PEAAAKDAMEAVWDVCYNDTQPFD 147
           P C  PE  A+ A+  VW+ C+ DT+PFD
Sbjct: 197 PACTSPEM-AEKAVNEVWESCFTDTRPFD 224

[Close]

BLAST of Cucsa.011040.2 vs. Swiss-Prot
Match: ATP23_CRYNB (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ATP23 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 63  HCEKQISGGYVRGEG---IRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVAN 122
           HC  ++  G +R      IRA +LSGDC + RE+ RGF       Q CV+RR + S++AN
Sbjct: 137 HCRFKVDWGNLRHHACSEIRAANLSGDCRFTREVKRGFYAFNKQHQACVKRRAILSVLAN 196

Query: 123 PYC--PEAAAKDAMEAVWDVCYNDTQPFD 147
           P C  PE  A+ A+  VW+ C+ DT+PFD
Sbjct: 197 PACTSPEM-AERAVNEVWESCFTDTRPFD 224

[Close]

BLAST of Cucsa.011040.2 vs. Swiss-Prot
Match: ATP23_AJECN (Mitochondrial inner membrane protease ATP23 OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=ATP23 PE=3 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 78  IRAGHLSGDCHYKRELLR-GFMKLRGHEQECVRRRVMKSLVANPYCPEAA-AKDAMEAVW 137
           IRA  LSG+C + RE  R G  KL    QECVRRR   S++A P C +A  AK  ++ VW
Sbjct: 166 IRASSLSGECRWAREFFRRGQWKLTQQHQECVRRRAALSVMARPACKDAEHAKQVVDEVW 225

Query: 138 DVCYNDTQPFD 147
           D C+ DT+PFD
Sbjct: 226 DSCFRDTRPFD 236

[Close]

BLAST of Cucsa.011040.2 vs. Swiss-Prot
Match: ATP23_YARLI (Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATP23 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 78  IRAGHLSGDCHYKRELLRGFMK--LRGHEQECVRRRVMKSLVANPYCP-EAAAKDAMEAV 137
           IRA  LSG+C    EL++G +    RGH QEC +RR + S++ANP C  EA A   +  V
Sbjct: 176 IRASTLSGECRMMNELMKGKLARLTRGH-QECAKRRAILSVMANPGCKDEAQATQVVNEV 235

Query: 138 WDVCYNDTQPFD 147
           WD C+NDT+PFD
Sbjct: 236 WDSCFNDTRPFD 246

[Close]

BLAST of Cucsa.011040.2 vs. Swiss-Prot
Match: ATP23_SCLS1 (Mitochondrial inner membrane protease atp23 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atp23 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 78  IRAGHLSGDCHYKREL-LRGFMKLRGHEQECVRRRVMKSLVANPYC-PEAAAKDAMEAVW 137
           IRA  LSG+C + RE   R   ++    QECVRRR +KS++A P+C  +  A   +  VW
Sbjct: 170 IRAASLSGECRWTREFWTRNNYRVTQQHQECVRRRAVKSVLARPWCKDDVQAVKVVNEVW 229

Query: 138 DVCYNDTQPFD 147
           D CY+DT+PFD
Sbjct: 230 DSCYSDTRPFD 240

[Close]

BLAST of Cucsa.011040.2 vs. TrEMBL
Match: M1AUF2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011703 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.6e-59
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 16  SSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIKAVHCEKQISGGYVRG 75
           S++N G T EEC+DMIRR LRTPMVKFL EHLEKSGC IGD FIKA+HC+++ISGGY RG
Sbjct: 5   STINKGSTVEECQDMIRRGLRTPMVKFLKEHLEKSGCRIGDNFIKAIHCDQKISGGYARG 64

Query: 76  EGIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAVW 135
            GIRAGHLSGDCHYKRELLRG++K+RGHEQECV+RRVMKS+  NP C E+A++DAMEA+W
Sbjct: 65  RGIRAGHLSGDCHYKRELLRGYLKIRGHEQECVKRRVMKSMSGNPNCSESASRDAMEAIW 124

Query: 136 DVCYNDTQPFDRAP 150
           DVCYNDT+PFDRAP
Sbjct: 125 DVCYNDTKPFDRAP 138

[Close]

BLAST of Cucsa.011040.2 vs. TrEMBL
Match: A0A0A0KSC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517840 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.3e-52
Identity = 119/195 (61.03%), Postives = 130/195 (66.67%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCEKQISGGYVRGEGIR--AGHLSGDCHYKR----ELLRGFMKLR------------- 120
           AVHCEKQISGGYVRGEGI   + H++      +    EL+  F   R             
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 ------GH-EQEC-VRRRVMKSLV-------------------ANPYCPEAAAKDAMEAV 150
                 GH   +C  +R +++  +                   ANPYCPEAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

[Close]

BLAST of Cucsa.011040.2 vs. TrEMBL
Match: B9SLT5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 103/195 (52.82%), Postives = 115/195 (58.97%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           M  E T  PGS        GGRT EEC+DMIR+SLRTPMVKFL EHLEK+GCGIGD FIK
Sbjct: 1   MEGEPTNTPGS--------GGRTIEECQDMIRKSLRTPMVKFLREHLEKAGCGIGDNFIK 60

Query: 61  AVHCEKQISGGYVRGEGI-------------------RAGHLSGDC------------HY 120
           AV+CEK++SGGYV G+GI                      H   DC            H 
Sbjct: 61  AVNCEKKMSGGYVSGDGIVVCSNHMNMQDEVNQVVIHELIHAYDDCRAANLDWANCVHHA 120

Query: 121 KRELLRGFMKLRGH---------------EQECVRRRVMKSLVANPYCPEAAAKDAMEAV 150
             E+  G +    H               EQECVRRRVMKS++ANPYC EAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQECVRRRVMKSMIANPYCSEAAAKDAMEAV 180

[Close]

BLAST of Cucsa.011040.2 vs. TrEMBL
Match: A0A0D2QVN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G267200 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40
Identity = 91/151 (60.26%), Postives = 103/151 (68.21%), Query Frame = 1


Query: 21  GRTKEECEDMIRRSLRTPMVKFLMEHLEK---------SGCGIGDRFIKAVHCEKQISGG 80
           G T +EC+DMI+RSLRTPMVKFLMEH+EK             I D   + V  E   +  
Sbjct: 11  GCTIKECQDMIQRSLRTPMVKFLMEHMEKTGCKIVVCSDQVKIQDDVNQVVIHELIHAYD 70

Query: 81  YVRGEG-------------IRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVA 140
             R                IRAGHLSGDCHYKRE LRGFMK+RGHEQ+CVRRRVMKS++A
Sbjct: 71  ECRASNLDWTNCAHHACSEIRAGHLSGDCHYKREFLRGFMKIRGHEQDCVRRRVMKSVIA 130

Query: 141 NPYCPEAAAKDAMEAVWDVCYNDTQPFDRAP 150
           NP+C E AAKDAMEAVWDVCYNDT+PFDRAP
Sbjct: 131 NPFCSETAAKDAMEAVWDVCYNDTKPFDRAP 161

[Close]

BLAST of Cucsa.011040.2 vs. TrEMBL
Match: D7SPY5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00250 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.1e-38
Identity = 95/195 (48.72%), Postives = 111/195 (56.92%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           M  +S P   +    S VNGG T +ECE MI++SLRTPMVKFL E+LEKSGC IGD+FIK
Sbjct: 1   MEGDSAPTIPAADVSSGVNGGMTVKECEQMIQKSLRTPMVKFLRENLEKSGCAIGDKFIK 60

Query: 61  AVHCEKQISGGYVRGEGI-------------------RAGHLSGDC------------HY 120
           A++C  ++SGGY RGEGI                      H   DC            H 
Sbjct: 61  AIYCNTKVSGGYARGEGIVVCSNHMNIQDEVNQVVIHELIHAYDDCRAANLDWTNCAHHA 120

Query: 121 KRELLRGFMKLRGH---------------EQECVRRRVMKSLVANPYCPEAAAKDAMEAV 150
             E+  G +    H                QECVRRRVMKS+ ANP+C EAAAKDAMEAV
Sbjct: 121 CSEIRSGHLSGDCHFKRELLRGYLKVRGHGQECVRRRVMKSVTANPHCSEAAAKDAMEAV 180

[Close]

BLAST of Cucsa.011040.2 vs. TAIR10
Match: AT3G03420.1 (AT3G03420.1 Ku70-binding family protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 78  IRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAVWDV 137
           IRAGHLSGDCH+KRELLRGF+KLRGHEQEC++RRV+KSL  NPYC E AAKDAMEAVWD 
Sbjct: 123 IRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSLRGNPYCSEVAAKDAMEAVWDT 182

Query: 138 CYNDTQPFDRAP 150
           CYNDT+PFDRAP
Sbjct: 183 CYNDTKPFDRAP 194

HSP 2 Score: 85.1 bits (209), Expect = 4.0e-17
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 1  MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
          M + + P  GS  +      G++ +EC+DMIRRS R P+VKFLME +EKSGC +GD F+K
Sbjct: 1  MEDAAAPNSGSEFN-PGARRGKSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVK 60

Query: 61 AVHCEKQISGGYVRGEGI 79
          AV C   ++GGY +G GI
Sbjct: 61 AVVCTGPVAGGYTKGRGI 77

[Close]

BLAST of Cucsa.011040.2 vs. NCBI nr
Match: gi|778703521|ref|XP_011655379.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 4.7e-52
Identity = 119/195 (61.03%), Postives = 130/195 (66.67%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCEKQISGGYVRGEGIR--AGHLSGDCHYKR----ELLRGFMKLR------------- 120
           AVHCEKQISGGYVRGEGI   + H++      +    EL+  F   R             
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 ------GH-EQEC-VRRRVMKSLV-------------------ANPYCPEAAAKDAMEAV 150
                 GH   +C  +R +++  +                   ANPYCPEAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

[Close]

BLAST of Cucsa.011040.2 vs. NCBI nr
Match: gi|659117903|ref|XP_008458847.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 116/195 (59.49%), Postives = 128/195 (65.64%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYSSV GGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVTGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCEKQISGGYVRGEGIR--AGHLSGDCHYKR----ELLRGFMKLR------------- 120
           AVHCEKQISGGYVRGEGI   + H++      +    EL+  F   R             
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 ------GH-EQEC-VRRRVMKSLV-------------------ANPYCPEAAAKDAMEAV 150
                 GH   +C  +R +++  +                   ANPYCPE AAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLTANPYCPEPAAKDAMEAV 180

[Close]

BLAST of Cucsa.011040.2 vs. NCBI nr
Match: gi|729377715|ref|XP_010549760.1| (PREDICTED: mitochondrial inner membrane protease ATP23 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 204.9 bits (520), Expect = 9.8e-50
Identity = 93/149 (62.42%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           M ++++P  GS+R +     G + EEC++MIRRSLR P VKFL+E +EKSGC +G  FI 
Sbjct: 1   MEDDTSPTIGSSR-FGDGQRGSSIEECQNMIRRSLRNPKVKFLIEQMEKSGCRVGANFIN 60

Query: 61  AVHCEKQISGGYVRGEGIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANP 120
           AV C+  I+GGY  GEGIRA HLSGDCH+KRELLRG++ +RGHEQ+C++RRVM S+  NP
Sbjct: 61  AVVCKGPIAGGYTAGEGIRANHLSGDCHFKRELLRGYLDMRGHEQDCIKRRVMMSMRNNP 120

Query: 121 YCPEAAAKDAMEAVWDVCYNDTQPFDRAP 150
            C EAA+KDAMEA+WD+CYNDT+PFDRAP
Sbjct: 121 NCTEAASKDAMEAIWDICYNDTKPFDRAP 148

[Close]

BLAST of Cucsa.011040.2 vs. NCBI nr
Match: gi|255572026|ref|XP_002526954.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Ricinus communis])

HSP 1 Score: 179.9 bits (455), Expect = 3.4e-42
Identity = 103/195 (52.82%), Postives = 115/195 (58.97%), Query Frame = 1


Query: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60
           M  E T  PGS        GGRT EEC+DMIR+SLRTPMVKFL EHLEK+GCGIGD FIK
Sbjct: 1   MEGEPTNTPGS--------GGRTIEECQDMIRKSLRTPMVKFLREHLEKAGCGIGDNFIK 60

Query: 61  AVHCEKQISGGYVRGEGI-------------------RAGHLSGDC------------HY 120
           AV+CEK++SGGYV G+GI                      H   DC            H 
Sbjct: 61  AVNCEKKMSGGYVSGDGIVVCSNHMNMQDEVNQVVIHELIHAYDDCRAANLDWANCVHHA 120

Query: 121 KRELLRGFMKLRGH---------------EQECVRRRVMKSLVANPYCPEAAAKDAMEAV 150
             E+  G +    H               EQECVRRRVMKS++ANPYC EAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQECVRRRVMKSMIANPYCSEAAAKDAMEAV 180

[Close]

BLAST of Cucsa.011040.2 vs. NCBI nr
Match: gi|823128929|ref|XP_012445283.1| (PREDICTED: mitochondrial inner membrane protease ATP23 isoform X2 [Gossypium raimondii])

HSP 1 Score: 171.8 bits (434), Expect = 9.2e-40
Identity = 91/151 (60.26%), Postives = 103/151 (68.21%), Query Frame = 1


Query: 21  GRTKEECEDMIRRSLRTPMVKFLMEHLEK---------SGCGIGDRFIKAVHCEKQISGG 80
           G T +EC+DMI+RSLRTPMVKFLMEH+EK             I D   + V  E   +  
Sbjct: 11  GCTIKECQDMIQRSLRTPMVKFLMEHMEKTGCKIVVCSDQVKIQDDVNQVVIHELIHAYD 70

Query: 81  YVRGEG-------------IRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVA 140
             R                IRAGHLSGDCHYKRE LRGFMK+RGHEQ+CVRRRVMKS++A
Sbjct: 71  ECRASNLDWTNCAHHACSEIRAGHLSGDCHYKREFLRGFMKIRGHEQDCVRRRVMKSVIA 130

Query: 141 NPYCPEAAAKDAMEAVWDVCYNDTQPFDRAP 150
           NP+C E AAKDAMEAVWDVCYNDT+PFDRAP
Sbjct: 131 NPFCSETAAKDAMEAVWDVCYNDTKPFDRAP 161

The following BLAST results are available for this feature:

BLAST of Cucsa.011040.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATP23_CRYNJ	2.5e-13	43.82	Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neof...	[more]
ATP23_CRYNB	3.3e-13	43.82	Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neof...	[more]
ATP23_AJECN	1.1e-11	50.70	Mitochondrial inner membrane protease ATP23 OS=Ajellomyces capsulatus (strain NA...	[more]
ATP23_YARLI	3.1e-11	50.00	Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB ...	[more]
ATP23_SCLS1	1.2e-10	46.48	Mitochondrial inner membrane protease atp23 OS=Sclerotinia sclerotiorum (strain ...	[more]

BLAST of Cucsa.011040.2 vs. TrEMBL


Match Name	E-value	Identity	Description
M1AUF2_SOLTU	3.6e-59	77.61	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011703 PE=4 SV=1	[more]
A0A0A0KSC7_CUCSA	3.3e-52	61.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517840 PE=4 SV=1	[more]
B9SLT5_RICCO	2.3e-42	52.82	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1	[more]
A0A0D2QVN7_GOSRA	6.4e-40	60.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G267200 PE=4 SV=1	[more]
D7SPY5_VITVI	2.1e-38	48.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00250 PE=4 SV=...	[more]

BLAST of Cucsa.011040.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03420.1	1.4e-33	84.72	Ku70-binding family protein	[more]

BLAST of Cucsa.011040.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703521\|ref\|XP_011655379.1\|	4.7e-52	61.03	PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis sativus]	[more]
gi\|659117903\|ref\|XP_008458847.1\|	1.2e-50	59.49	PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis melo]	[more]
gi\|729377715\|ref\|XP_010549760.1\|	9.8e-50	62.42	PREDICTED: mitochondrial inner membrane protease ATP23 isoform X2 [Tarenaya hass...	[more]
gi\|255572026\|ref\|XP_002526954.1\|	3.4e-42	52.82	PREDICTED: mitochondrial inner membrane protease ATP23 [Ricinus communis]	[more]
gi\|823128929\|ref\|XP_012445283.1\|	9.2e-40	60.26	PREDICTED: mitochondrial inner membrane protease ATP23 isoform X2 [Gossypium rai...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019165	Peptidase_M76_ATP23

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004222	metalloendopeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.011040	Cucsa.011040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.011040.2	Cucsa.011040.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.011040.2.five_prime_UTR.1	Cucsa.011040.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.011040.2.CDS.1	Cucsa.011040.2.CDS.1	CDS
Cucsa.011040.2.CDS.2	Cucsa.011040.2.CDS.2	CDS
Cucsa.011040.2.CDS.3	Cucsa.011040.2.CDS.3	CDS
Cucsa.011040.2.CDS.4	Cucsa.011040.2.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.011040.2.three_prime_UTR.1	Cucsa.011040.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019165	Peptidase M76, ATP23	PFAM	PF09768	Peptidase_M76	coord: 78..146 score: 1.3
None	No IPR available	PANTHER	PTHR21711	KUB3-PROV PROTEIN	coord: 25..149 score: 6.7
None	No IPR available	PANTHER	PTHR21711:SF0	MITOCHONDRIAL INNER MEMBRANE PROTEASE ATP23 HOMOLOG	coord: 25..149 score: 6.7