CsaV3_UNG230080.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATAAAAAATTATCTAAAGTTTCATTGGGGGAGGCTGATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGACGGGGAGATTGCTTTAACCGGAATACGGGATTCTCACCCCGTGTTTTCAACGCACAGATTGAAGTTCCGACTCCCTCAGATTATCACCTCCACTCCCCAACGCCGCCGTCTTCTTCGACATTGGATTCAAGTCCACCTTCCCGCCCTCCCTCCTACTCTTTCCCTATCTCCCTACTCTTCTTCCCGGTCCTTGTTGCACAACCTAACTCTTCTTCCCCGGCTACAACTTCCTTCTTATCAACTCCACTGTCTCTGAAGATCTAGACTCGAAATTTCGTTTTCATGCTCTTATTGAGTTCTGGTTATTAGGGTTTTCTTTCGCCTTGCCTCCACTTTTCTCACTTCCATTGGCGTACTTCTGCTGAAATTAGAGGTTTAATTTTTTCATTTCTCTATCTTTTTGGCATTTTGGATTCTTCTGCTGTTTCCTTTTTCTCCTCATTCATTGGATTCTTTTTTTTTTTCTGCCTAACATCGTAAATATCGATGCTCTCTGTTTGTTTTGAATTTTTCTTGCTTCTTAACTTTTACCTAGTTTTTTGGAATACGTAACATGGATAAATCAGGAAAAAAAGAATTACGTGCTTCTCCCTGGGTATATATTGATTCGGAAAAAATGTGATTCTTGAATTACTACATGCAATCTTTTCATAGTTGGTTCGGGTTGGGAATGCATGTTAAATTAACTTTGTGATTGATCTTTGTCACTCGTATTCATCTGTCTACCACATTGGTAATGGAGATGAGGGATTTTCTTAAATATGGATTATGGACTTGTATCATCCATCAGATTGTGTTATTTTCGTTTTAGTAAACTCTATTATTTTGATTTTCTATACTCTTTTTTGCTTTTGGACGGCTCTACTTCATTGATAACGCTCTTCACCACAGCTGTACTCTGGAAAATGGGTACTCCTGTCTTGATTTTGTCTCGTTTGGGATCAAGAGATGTTTATATGTTTCTCACAAGAAGAAATACAATAAGTATAGGATTTATTACACAATTGGTCATAAAATCTAAAGAAGTACAACAATAGTTTATAGTTGTAGTCGTGCAATATAGAAGCACACCAACTTACTACATTTCCTTTTTTTTTTTCCCGCAAAGGAACCTTTTACACAACCTTGACTGCAGAAGTTAAAAGGGAAAGGATTGTGAGTGTTAGGTGCACCGTAGTGAAACCTCACCATCAAAATGTGCAAGTTTTGCCTCTAACAACACTGGTCGTGAATGTTTACAACTGATCTCTCTCAGTTATTTTTTATATTTTTATTGTTATTTTTTCTTTTTCTGCAAGGCTAGATTTCGTTTCAATCTATTAATGTGATTGGCCATATTTTGGTGAACTTATTTGTTACAAATCAAAGGGAAAAGAAATCAGCCTTGACTATATACTTCTTTTGTCTACAGGCTACAATCCTGCTTGGTTGCTCTGGACCTCGTATGGTCATTAAAAATGATTGAATTGAATATTTCTTGAAATTGTACATTAAATTCACTTTTCAATGGCTCGTAAGGGTAATCAACAGAAAACAGGGTCAGAGGCCATGCATCGAACAGTAAAAAAAAGGTTCAGATTTGCAGTCCAAGGGGCAAGGAAGAGCACGAGAAATAAAGGTATTTCCCGGAGAGGAACTACCAAATGACAACCAGCATAGTCGACCGTTCGAGGAAGGGATGATGAATAGTGACTCTGGAGAAGGTTTGAAGAATCTAAAAAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGGTCCAGAGGAACCAAATTTTCCCTCCGAAGAATCTGAGAACTGCGATGGAAACAACGGAGGCTCTAGTGTAGGAGAACAATACAAGGGGTCTTCTGGTGATAAGGACCAGGTTCAGGTAGATGGAAGCTTCAGCTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCGGATAATTTTGGTGAAAAGTTCTGTGGAATCTATGTCATCAATATTTGA ATGAATAAAAAATTATCTAAAGTTTCATTGGGGGAGGCTGATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGACGGGGAGATTGCTTTAACCGGAATACGGGATTCTCACCCCGTGTTTTCAACGCACAGATTGAAGTTCCGACTCCCTCAGATTATCACCTCCACTCCCCAACGCCGCCGTCTTCTTCGACATTGGATTCAAGTCCACCTTCCCGCCCTCCCTCCTACTCTTTCCCTATCTCCCTACTCTTCTTCCCGGGTTTTCTTTCGCCTTGCCTCCACTTTTCTCACTTCCATTGGCGTACTTCTGCTGAAATTAGAGGCTACAATCCTGCTTGGTTGCTCTGGACCTCGTATGTCCAAGGGGCAAGGAAGAGCACGAGAAATAAAGGTATTTCCCGGAGAGGAACTACCAAATGACAACCAGCATAGTCGACCGTTCGAGGAAGGGATGATGAATAGTGACTCTGGAGAAGGTTTGAAGAATCTAAAAAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGGTCCAGAGGAACCAAATTTTCCCTCCGAAGAATCTGAGAACTGCGATGGAAACAACGGAGGCTCTAGTGTAGGAGAACAATACAAGGGGTCTTCTGGTGATAAGGACCAGGTTCAGGTAGATGGAAGCTTCAGCTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCGGATAATTTTGGTGAAAAGTTCTGTGGAATCTATGTCATCAATATTTGA ATGAATAAAAAATTATCTAAAGTTTCATTGGGGGAGGCTGATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGACGGGGAGATTGCTTTAACCGGAATACGGGATTCTCACCCCGTGTTTTCAACGCACAGATTGAAGTTCCGACTCCCTCAGATTATCACCTCCACTCCCCAACGCCGCCGTCTTCTTCGACATTGGATTCAAGTCCACCTTCCCGCCCTCCCTCCTACTCTTTCCCTATCTCCCTACTCTTCTTCCCGGGTTTTCTTTCGCCTTGCCTCCACTTTTCTCACTTCCATTGGCGTACTTCTGCTGAAATTAGAGGCTACAATCCTGCTTGGTTGCTCTGGACCTCGTATGTCCAAGGGGCAAGGAAGAGCACGAGAAATAAAGGTATTTCCCGGAGAGGAACTACCAAATGACAACCAGCATAGTCGACCGTTCGAGGAAGGGATGATGAATAGTGACTCTGGAGAAGGTTTGAAGAATCTAAAAAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGGTCCAGAGGAACCAAATTTTCCCTCCGAAGAATCTGAGAACTGCGATGGAAACAACGGAGGCTCTAGTGTAGGAGAACAATACAAGGGGTCTTCTGGTGATAAGGACCAGGTTCAGGTAGATGGAAGCTTCAGCTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCGGATAATTTTGGTGAAAAGTTCTGTGGAATCTATGTCATCAATATTTGA MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTPQRRRLLRHWIQVHLPALPPTLSLSPYSSSRVFFRLASTFLTSIGVLLLKLEATILLGCSGPRMSKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLKNLKKSAKSLRKEKQGIEGLHGPEEPNFPSEESENCDGNNGGSSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMANLNFSDNFGEKFCGIYVINI
BLAST of CsaV3_UNG230080.1 vs. NCBI nr
Match: XP_004148820.2 (PREDICTED: uncharacterized protein LOC101205292 [Cucumis sativus] >KGN47442.1 hypothetical protein Csa_6G324860 [Cucumis sativus]) HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. NCBI nr
Match: KGN47441.1 (hypothetical protein Csa_6G324850 [Cucumis sativus]) HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. NCBI nr
Match: XP_022959130.1 (uncharacterized protein LOC111460216 [Cucurbita moschata]) HSP 1 Score: 115.2 bits (287), Expect = 3.5e-22 Identity = 65/127 (51.18%), Postives = 72/127 (56.69%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. NCBI nr
Match: XP_023006520.1 (uncharacterized protein LOC111499224 [Cucurbita maxima]) HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21 Identity = 65/127 (51.18%), Postives = 71/127 (55.91%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. NCBI nr
Match: XP_023548281.1 (uncharacterized protein LOC111806957 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21 Identity = 64/127 (50.39%), Postives = 72/127 (56.69%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. TrEMBL
Match: tr|A0A0A0KGB7|A0A0A0KGB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324860 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. TrEMBL
Match: tr|A0A0A0KI41|A0A0A0KI41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324850 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG230080.1 vs. TrEMBL
Match: tr|A0A1S3C7K6|A0A1S3C7K6_CUCME (uncharacterized protein LOC103497773 OS=Cucumis melo OX=3656 GN=LOC103497773 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11 Identity = 48/96 (50.00%), Postives = 51/96 (53.12%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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