CsaV3_UNG230080 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG230080
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	scaffold116 : 85039 .. 87126 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAAAAATTATCTAAAGTTTCATTGGGGGAGGCTGATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGACGGGGAGATTGCTTTAACCGGAATACGGGATTCTCACCCCGTGTTTTCAACGCACAGATTGAAGTTCCGACTCCCTCAGATTATCACCTCCACTCCCCAACGCCGCCGTCTTCTTCGACATTGGATTCAAGTCCACCTTCCCGCCCTCCCTCCTACTCTTTCCCTATCTCCCTACTCTTCTTCCCGGTCCTTGTTGCACAACCTAACTCTTCTTCCCCGGCTACAACTTCCTTCTTATCAACTCCACTGTCTCTGAAGATCTAGACTCGAAATTTCGTTTTCATGCTCTTATTGAGTTCTGGTTATTAGGGTTTTCTTTCGCCTTGCCTCCACTTTTCTCACTTCCATTGGCGTACTTCTGCTGAAATTAGAGGTTTAATTTTTTCATTTCTCTATCTTTTTGGCATTTTGGATTCTTCTGCTGTTTCCTTTTTCTCCTCATTCATTGGATTCTTTTTTTTTTTCTGCCTAACATCGTAAATATCGATGCTCTCTGTTTGTTTTGAATTTTTCTTGCTTCTTAACTTTTACCTAGTTTTTTGGAATACGTAACATGGATAAATCAGGAAAAAAAGAATTACGTGCTTCTCCCTGGGTATATATTGATTCGGAAAAAATGTGATTCTTGAATTACTACATGCAATCTTTTCATAGTTGGTTCGGGTTGGGAATGCATGTTAAATTAACTTTGTGATTGATCTTTGTCACTCGTATTCATCTGTCTACCACATTGGTAATGGAGATGAGGGATTTTCTTAAATATGGATTATGGACTTGTATCATCCATCAGATTGTGTTATTTTCGTTTTAGTAAACTCTATTATTTTGATTTTCTATACTCTTTTTTGCTTTTGGACGGCTCTACTTCATTGATAACGCTCTTCACCACAGCTGTACTCTGGAAAATGGGTACTCCTGTCTTGATTTTGTCTCGTTTGGGATCAAGAGATGTTTATATGTTTCTCACAAGAAGAAATACAATAAGTATAGGATTTATTACACAATTGGTCATAAAATCTAAAGAAGTACAACAATAGTTTATAGTTGTAGTCGTGCAATATAGAAGCACACCAACTTACTACATTTCCTTTTTTTTTTTCCCGCAAAGGAACCTTTTACACAACCTTGACTGCAGAAGTTAAAAGGGAAAGGATTGTGAGTGTTAGGTGCACCGTAGTGAAACCTCACCATCAAAATGTGCAAGTTTTGCCTCTAACAACACTGGTCGTGAATGTTTACAACTGATCTCTCTCAGTTATTTTTTATATTTTTATTGTTATTTTTTCTTTTTCTGCAAGGCTAGATTTCGTTTCAATCTATTAATGTGATTGGCCATATTTTGGTGAACTTATTTGTTACAAATCAAAGGGAAAAGAAATCAGCCTTGACTATATACTTCTTTTGTCTACAGGCTACAATCCTGCTTGGTTGCTCTGGACCTCGTATGGTCATTAAAAATGATTGAATTGAATATTTCTTGAAATTGTACATTAAATTCACTTTTCAATGGCTCGTAAGGGTAATCAACAGAAAACAGGGTCAGAGGCCATGCATCGAACAGTAAAAAAAAGGTTCAGATTTGCAGTCCAAGGGGCAAGGAAGAGCACGAGAAATAAAGGTATTTCCCGGAGAGGAACTACCAAATGACAACCAGCATAGTCGACCGTTCGAGGAAGGGATGATGAATAGTGACTCTGGAGAAGGTTTGAAGAATCTAAAAAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGGTCCAGAGGAACCAAATTTTCCCTCCGAAGAATCTGAGAACTGCGATGGAAACAACGGAGGCTCTAGTGTAGGAGAACAATACAAGGGGTCTTCTGGTGATAAGGACCAGGTTCAGGTAGATGGAAGCTTCAGCTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCGGATAATTTTGGTGAAAAGTTCTGTGGAATCTATGTCATCAATATTTGA

mRNA sequence

ATGAATAAAAAATTATCTAAAGTTTCATTGGGGGAGGCTGATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGACGGGGAGATTGCTTTAACCGGAATACGGGATTCTCACCCCGTGTTTTCAACGCACAGATTGAAGTTCCGACTCCCTCAGATTATCACCTCCACTCCCCAACGCCGCCGTCTTCTTCGACATTGGATTCAAGTCCACCTTCCCGCCCTCCCTCCTACTCTTTCCCTATCTCCCTACTCTTCTTCCCGGGTTTTCTTTCGCCTTGCCTCCACTTTTCTCACTTCCATTGGCGTACTTCTGCTGAAATTAGAGGCTACAATCCTGCTTGGTTGCTCTGGACCTCGTATGTCCAAGGGGCAAGGAAGAGCACGAGAAATAAAGGTATTTCCCGGAGAGGAACTACCAAATGACAACCAGCATAGTCGACCGTTCGAGGAAGGGATGATGAATAGTGACTCTGGAGAAGGTTTGAAGAATCTAAAAAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGGTCCAGAGGAACCAAATTTTCCCTCCGAAGAATCTGAGAACTGCGATGGAAACAACGGAGGCTCTAGTGTAGGAGAACAATACAAGGGGTCTTCTGGTGATAAGGACCAGGTTCAGGTAGATGGAAGCTTCAGCTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCGGATAATTTTGGTGAAAAGTTCTGTGGAATCTATGTCATCAATATTTGA

Coding sequence (CDS)

ATGAATAAAAAATTATCTAAAGTTTCATTGGGGGAGGCTGATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGACGGGGAGATTGCTTTAACCGGAATACGGGATTCTCACCCCGTGTTTTCAACGCACAGATTGAAGTTCCGACTCCCTCAGATTATCACCTCCACTCCCCAACGCCGCCGTCTTCTTCGACATTGGATTCAAGTCCACCTTCCCGCCCTCCCTCCTACTCTTTCCCTATCTCCCTACTCTTCTTCCCGGGTTTTCTTTCGCCTTGCCTCCACTTTTCTCACTTCCATTGGCGTACTTCTGCTGAAATTAGAGGCTACAATCCTGCTTGGTTGCTCTGGACCTCGTATGTCCAAGGGGCAAGGAAGAGCACGAGAAATAAAGGTATTTCCCGGAGAGGAACTACCAAATGACAACCAGCATAGTCGACCGTTCGAGGAAGGGATGATGAATAGTGACTCTGGAGAAGGTTTGAAGAATCTAAAAAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGGTCCAGAGGAACCAAATTTTCCCTCCGAAGAATCTGAGAACTGCGATGGAAACAACGGAGGCTCTAGTGTAGGAGAACAATACAAGGGGTCTTCTGGTGATAAGGACCAGGTTCAGGTAGATGGAAGCTTCAGCTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCGGATAATTTTGGTGAAAAGTTCTGTGGAATCTATGTCATCAATATTTGA

Protein sequence

MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTPQRRRLLRHWIQVHLPALPPTLSLSPYSSSRVFFRLASTFLTSIGVLLLKLEATILLGCSGPRMSKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLKNLKKSAKSLRKEKQGIEGLHGPEEPNFPSEESENCDGNNGGSSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMANLNFSDNFGEKFCGIYVINI

Homology

[Close]

BLAST of CsaV3_UNG230080 vs. NCBI nr
Match: XP_004148820.2 (PREDICTED: uncharacterized protein LOC101205292 [Cucumis sativus] >KGN47442.1 hypothetical protein Csa_6G324860 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 123 SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 182
           SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX
Sbjct: 28  SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 87

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 242
           XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA
Sbjct: 88  XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 147

Query: 243 NLNFSDN 250
           NLNFSDN
Sbjct: 148 NLNFSDN 154

[Close]

BLAST of CsaV3_UNG230080 vs. NCBI nr
Match: KGN47441.1 (hypothetical protein Csa_6G324850 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTP 60
          MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTP
Sbjct: 1  MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTP 59

[Close]

BLAST of CsaV3_UNG230080 vs. NCBI nr
Match: XP_022959130.1 (uncharacterized protein LOC111460216 [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-22
Identity = 65/127 (51.18%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 123 SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 182
           SKGQGRAREIKVFPGE LPNDN HSR FEEGM+N +SGEG+                   
Sbjct: 28  SKGQGRAREIKVFPGEGLPNDNHHSRAFEEGMVNRNSGEGIKNLKKSEKSLRKEKQGVEG 87

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 242
                                   S+GEQY GS  DK+Q  +DGSFS FLNGEHIR+VM 
Sbjct: 88  FHSPDEPTCLPEESGNCNGNNEDSSIGEQYNGS--DKEQDPLDGSFSCFLNGEHIRNVMG 147

Query: 243 NLNFSDN 250
           NL FSDN
Sbjct: 148 NLKFSDN 152

[Close]

BLAST of CsaV3_UNG230080 vs. NCBI nr
Match: XP_023006520.1 (uncharacterized protein LOC111499224 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 65/127 (51.18%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 123 SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 182
           SKGQGRAREIKVFPGE LPNDN HSR FEEGM+N +SGEG+                   
Sbjct: 28  SKGQGRAREIKVFPGEVLPNDNHHSRAFEEGMVNQNSGEGIKNLKKFEKSLRKEKQGVEG 87

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 242
                                   S+GEQY GS  DK Q  +DGSFS FLNGEHIR+VM 
Sbjct: 88  FHSPEEPTCLPEESGNCNGNNEDSSIGEQYNGS--DKVQDPLDGSFSCFLNGEHIRNVMG 147

Query: 243 NLNFSDN 250
           NL FSDN
Sbjct: 148 NLKFSDN 152

[Close]

BLAST of CsaV3_UNG230080 vs. NCBI nr
Match: XP_023548281.1 (uncharacterized protein LOC111806957 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 64/127 (50.39%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 123 SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 182
           SKGQGRAREIKVFPGE LPNDN HSR FEEGM+N +SGEG+                   
Sbjct: 28  SKGQGRAREIKVFPGEGLPNDNHHSRAFEEGMVNRNSGEGIKNLKKSEKSLRKEKQGVEG 87

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 242
                                   S+GEQY GS  DK++  +DGSFS FLNGEHIR+VM 
Sbjct: 88  FHSPDEPTCLPEESGNCNGNNEDSSIGEQYNGS--DKERDPLDGSFSCFLNGEHIRNVMG 147

Query: 243 NLNFSDN 250
           NL FSDN
Sbjct: 148 NLKFSDN 152

[Close]

BLAST of CsaV3_UNG230080 vs. TrEMBL
Match: tr|A0A0A0KGB7|A0A0A0KGB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324860 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 123 SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 182
           SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX
Sbjct: 28  SKGQGRAREIKVFPGEELPNDNQHSRPFEEGMMNSDSGEGLXXXXXXXXXXXXXXXXXXX 87

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 242
           XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA
Sbjct: 88  XXXXXXXXXXXXXXXXXXXXXXXXSVGEQYKGSSGDKDQVQVDGSFSFFLNGEHIRSVMA 147

Query: 243 NLNFSDN 250
           NLNFSDN
Sbjct: 148 NLNFSDN 154

[Close]

BLAST of CsaV3_UNG230080 vs. TrEMBL
Match: tr|A0A0A0KI41|A0A0A0KI41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324850 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTP 60
          MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTP
Sbjct: 1  MNKKLSKVSLGEADFQLFYAFVVDNGDGEIALTGIRDSHPVFSTHRLKFRLPQIITSTP 59

[Close]

BLAST of CsaV3_UNG230080 vs. TrEMBL
Match: tr|A0A1S3C7K6|A0A1S3C7K6_CUCME (uncharacterized protein LOC103497773 OS=Cucumis melo OX=3656 GN=LOC103497773 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 48/96 (50.00%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 154 MMNSDSGEGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGEQYK 213
           MMN+DSGEGL                                           SVGEQ  
Sbjct: 1   MMNNDSGEGLKNLKKSAKSLRKEKQGIEGLHTLEEPKFPSEESENCDRNNGGPSVGEQ-- 60

Query: 214 GSSGDKDQVQVDGSFSFFLNGEHIRSVMANLNFSDN 250
           GS+GDKDQVQVDGSF+FFLNGEHIRSVMANLNFSDN
Sbjct: 61  GSAGDKDQVQVDGSFNFFLNGEHIRSVMANLNFSDN 94

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG230080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148820.2	2.3e-34	100.00	PREDICTED: uncharacterized protein LOC101205292 [Cucumis sativus] >KGN47442.1 hy...	[more]
KGN47441.1	1.7e-24	100.00	hypothetical protein Csa_6G324850 [Cucumis sativus]	[more]
XP_022959130.1	3.5e-22	51.18	uncharacterized protein LOC111460216 [Cucurbita moschata]	[more]
XP_023006520.1	1.0e-21	51.18	uncharacterized protein LOC111499224 [Cucurbita maxima]	[more]
XP_023548281.1	1.0e-21	50.39	uncharacterized protein LOC111806957 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_UNG230080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG230080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG230080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGB7\|A0A0A0KGB7_CUCSA	1.5e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324860 PE=4 SV=1	[more]
tr\|A0A0A0KI41\|A0A0A0KI41_CUCSA	1.1e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324850 PE=4 SV=1	[more]
tr\|A0A1S3C7K6\|A0A1S3C7K6_CUCME	1.8e-11	50.00	uncharacterized protein LOC103497773 OS=Cucumis melo OX=3656 GN=LOC103497773 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG230080.1	CsaV3_UNG230080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 163..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..220

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG230080	CSPI06G17630	Wild cucumber (PI 183967)	cpicucB321
CsaV3_UNG230080	Carg05562	Silver-seed gourd	carcucB0076
CsaV3_UNG230080	MELO3C021254	Melon (DHL92) v3.5.1	cucmeB094
CsaV3_UNG230080	Cla97C06G113830	Watermelon (97103) v2	cucwmbB097
CsaV3_UNG230080	Bhi12G001745	Wax gourd	cucwgoB128

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_UNG230080	CsaV3_6G028410	Cucumber (Chinese Long) v3	cuccucB064

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_UNG230080	Cucumber (Gy14) v2	cgybcucB257
CsaV3_UNG230080	Cucumber (Gy14) v1	cgycucB373
CsaV3_UNG230080	Cucurbita maxima (Rimu)	cmacucB0417
CsaV3_UNG230080	Cucurbita moschata (Rifu)	cmocucB0412
CsaV3_UNG230080	Melon (DHL92) v3.6.1	cucmedB087
CsaV3_UNG230080	Watermelon (Charleston Gray)	cucwcgB104
CsaV3_UNG230080	Watermelon (97103) v1	cucwmB111