CsaV3_UNG046330.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG046330.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Zinc finger CCCH domain-containing protein
Location	scaffold72 : 14990 .. 15834 (-)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCATCCCTCCGGAACTTACATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGCAGCCTTCCAACAACTCCAACTCGGGCTCCAACTGGTCATGGTGTTGGACTGCTCGATTTCACAGAGCATGGATTCGAGGAGGAGCCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCGGATGTTGAATGGGTATCAGAGCTAGTGAAGTGAGTATTGAAATTGAACTTTTTGGTTGGTTCTTCAAATGGGTTTTTTTTCTCTAATCATTATTCGATTCTGATTTTAAGGAAACAAAAAATTAGCCTAAGCCTAAGCCTAAGCCTAAGCCGAATCTTTTTGTTTGATATGTAAATACACAAAATGGGGGCAACTAAAACTGGGAAGACAATAGGATTTTAATTTTTACTTGTGTAAGCCTTAAATATGTATATATGGGCTCTGTTTTTAGAATTTTGAAATGGGTTGATAAGAATTTTGATGGAGAAATGAAAATTCCATCTAACTCTCAATGTATAGGTAGTAATTTTAGTGAACTAGATATGATGATCCATAGGATCATGGGGTTATGATAGTTTTCTACTTTCTGATCATTGTGATTATATATTGTAAGTTAATGTTTGTGTTAATGCAAATTATATGGATGAACTTGATTTAAATTGTCGTTGACTTGTTAATTGTGTTGTTGTTGATAAAGGTGGCCTGAATTGTGA

mRNA sequence

ATGGTCGCATCCCTCCGGAACTTACATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGCAGCCTTCCAACAACTCCAACTCGGGCTCCAACTGGTCATGGTGTTGGACTGCTCGATTTCACAGAGCATGGATTCGAGGAGGAGCCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCGGATGTTGAATGGGTATCAGAGCTAGTGAAGTGGCCTGAATTGTGA

Coding sequence (CDS)

ATGGTCGCATCCCTCCGGAACTTACATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGCAGCCTTCCAACAACTCCAACTCGGGCTCCAACTGGTCATGGTGTTGGACTGCTCGATTTCACAGAGCATGGATTCGAGGAGGAGCCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCGGATGTTGAATGGGTATCAGAGCTAGTGAAGTGGCCTGAATTGTGA

Protein sequence

MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVKWPEL

Homology

[Close]

BLAST of CsaV3_UNG046330.1 vs. NCBI nr
Match: XP_004135688.1 (PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 7.2e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE
Sbjct: 269 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 328

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK
Sbjct: 329 HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 382

[Close]

BLAST of CsaV3_UNG046330.1 vs. NCBI nr
Match: KGN66203.1 (hypothetical protein Csa_1G575190 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 7.2e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE
Sbjct: 164 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 223

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK
Sbjct: 224 HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 277

[Close]

BLAST of CsaV3_UNG046330.1 vs. NCBI nr
Match: NP_001315383.1 (zinc finger CCCH domain-containing protein 49-like [Cucumis melo] >AGL76984.1 zinc finger CCCH domain-containing protein [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 1.0e-58
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDF+E
Sbjct: 272 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSE 331

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           +GFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK
Sbjct: 332 YGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 385

[Close]

BLAST of CsaV3_UNG046330.1 vs. NCBI nr
Match: XP_022961034.1 (zinc finger CCCH domain-containing protein 20 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 5.2e-50
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR+CHGFCSLPTTPTRAPT  GVGLLDF++
Sbjct: 268 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSD 327

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           HG +EEP MERVESGRELRAKMLEKLSKENSLD  +S+ S CTPDV WVSEL+K
Sbjct: 328 HGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLK 381

[Close]

BLAST of CsaV3_UNG046330.1 vs. NCBI nr
Match: XP_023516367.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.5 bits (524), Expect = 5.2e-50
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR+CHGFCSLPTTPTRAPT  GVGLLDF++
Sbjct: 268 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSD 327

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           HG +EEP MERVESGRELRAKMLEKLSKENSLD  +S+ S CTPDV WVSEL+K
Sbjct: 328 HGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLK 381

[Close]

BLAST of CsaV3_UNG046330.1 vs. TAIR10
Match: AT2G19810.1 (CCCH-type zinc finger family protein)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-23
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 1   MVASLRNLHLSKVK-SLPSSWNVQIGSPGYP------SRVCHGFCSLPTTPTRAPTGHGV 60
           +VASLRNL L+KVK SL SS+N QIG  G        S +  GF SLPTTPTR       
Sbjct: 242 VVASLRNLQLNKVKSSLSSSYNNQIGGYGXXXXXXRGSVLGPGFRSLPTTPTRP------ 301

Query: 61  GLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNP---STCTPDVEWVS 114
           G ++  E+G EEEP MERVESGRELRA++ EKLSKEN +   E +P   +  TPDV WVS
Sbjct: 302 GFMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVS 358

[Close]

BLAST of CsaV3_UNG046330.1 vs. TAIR10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-18
Identity = 61/118 (51.69%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNV-QIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFT 60
           +V S RNL  + VKS P +  +   GSP   S +  GF SLPTTPTR       G LD  
Sbjct: 245 VVPSFRNLQFNSVKSFPRNNPLFGFGSP-RGSILGPGFQSLPTTPTRP------GNLDIW 304

Query: 61  EHGFEEEPVMER-VESGRELRAKMLEKLSKENSLDWAESNPSTC---TPDVEWVSELV 114
           E+G EEEPVMER VESGRELR KM EKL KEN +D    +P       PDV WVS+L+
Sbjct: 305 EYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]

BLAST of CsaV3_UNG046330.1 vs. TAIR10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 60  EHGFEEEPVMERVESGRELRAKMLEKLSKENSL 93
           E   EE P ME VESG+ELRA+M  +LS+ENSL
Sbjct: 282 EFEIEEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]

BLAST of CsaV3_UNG046330.1 vs. Swiss-Prot
Match: sp|O82199|C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 1   MVASLRNLHLSKVK-SLPSSWNVQIGSPGYP------SRVCHGFCSLPTTPTRAPTGHGV 60
           +VASLRNL L+KVK SL SS+N QIG  G        S +  GF SLPTTPTR       
Sbjct: 242 VVASLRNLQLNKVKSSLSSSYNNQIGGYGXXXXXXRGSVLGPGFRSLPTTPTRP------ 301

Query: 61  GLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNP---STCTPDVEWVS 114
           G ++  E+G EEEP MERVESGRELRA++ EKLSKEN +   E +P   +  TPDV WVS
Sbjct: 302 GFMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVS 358

[Close]

BLAST of CsaV3_UNG046330.1 vs. Swiss-Prot
Match: sp|Q9M0G2|C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-17
Identity = 61/118 (51.69%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNV-QIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFT 60
           +V S RNL  + VKS P +  +   GSP   S +  GF SLPTTPTR       G LD  
Sbjct: 245 VVPSFRNLQFNSVKSFPRNNPLFGFGSP-RGSILGPGFQSLPTTPTRP------GNLDIW 304

Query: 61  EHGFEEEPVMER-VESGRELRAKMLEKLSKENSLDWAESNPSTC---TPDVEWVSELV 114
           E+G EEEPVMER VESGRELR KM EKL KEN +D    +P       PDV WVS+L+
Sbjct: 305 EYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]

BLAST of CsaV3_UNG046330.1 vs. Swiss-Prot
Match: sp|Q9FU27|C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPS-SWNVQIGSPGYPS-RVCHGFCSLPTTP--------TRAPTG 60
           ++AS R L L+KVKS PS  W+    S  Y S +   G  SLPTTP        T +   
Sbjct: 263 VLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLASTATVTTASSFM 322

Query: 61  HGVGLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTP--DVEW 114
             +  LD    G +EEPV +RVESGR LR K+ E+LS++ ++    +  +T     DV+W
Sbjct: 323 PNLEPLDLGLIG-DEEPV-QRVESGRALREKVFERLSRDGAISGDATAFATAGVGLDVDW 382

[Close]

BLAST of CsaV3_UNG046330.1 vs. Swiss-Prot
Match: sp|Q6L4N4|C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.5e-05
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 64  EEEPVMERVESGRELRAKMLEKLSKENSLDW-AESNPSTCTPDVEWVSELV 114
           EEE  MERVESGR LR K+ E+LSKE ++   A +  +   PDV WVS+L+
Sbjct: 351 EEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVGWVSDLI 401

[Close]

BLAST of CsaV3_UNG046330.1 vs. TrEMBL
Match: tr|A0A0A0LWQ7|A0A0A0LWQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575190 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.8e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE
Sbjct: 164 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 223

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK
Sbjct: 224 HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 277

[Close]

BLAST of CsaV3_UNG046330.1 vs. TrEMBL
Match: tr|A0A1S3BQ41|A0A1S3BQ41_CUCME (zinc finger CCCH domain-containing protein 49-like OS=Cucumis melo OX=3656 GN=LOC103492287 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-59
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDF+E
Sbjct: 269 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSE 328

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           +GFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK
Sbjct: 329 YGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 382

[Close]

BLAST of CsaV3_UNG046330.1 vs. TrEMBL
Match: tr|R4QQJ8|R4QQJ8_CUCME (Zinc finger CCCH domain-containing protein OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-59
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTE 60
           MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDF+E
Sbjct: 272 MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSE 331

Query: 61  HGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
           +GFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK
Sbjct: 332 YGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 385

[Close]

BLAST of CsaV3_UNG046330.1 vs. TrEMBL
Match: tr|A0A2N9IKS7|A0A2N9IKS7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52602 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 80/119 (67.23%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR----VCHGFCSLPTTPTR-APTGHGVGL 60
           MVASLRNL L KVKSLPSSWNVQIGS G+ S     +  GFCS+PTTPTR APT  G+G 
Sbjct: 277 MVASLRNLQLGKVKSLPSSWNVQIGSSGFGSPRGSILRPGFCSMPTTPTRTAPTRPGIGY 336

Query: 61  LDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 115
            D  E G EEEP MERVESGR++RAKM EKL +ENSL   + +PST +PDV WVSELVK
Sbjct: 337 FDLWEQGCEEEPPMERVESGRDIRAKMFEKLREENSLGRVDPSPSTNSPDVGWVSELVK 395

[Close]

BLAST of CsaV3_UNG046330.1 vs. TrEMBL
Match: tr|A0A251NEY3|A0A251NEY3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G216200 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.2e-32
Identity = 81/126 (64.29%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   MVASLRNLHLSKVKSLPSSWNVQI-----GSPGYPSRVC-------HGFCSLPTTPTRAP 60
           +VASLRNL L KVKSLPSSWNVQ+     GSPG P  V         GFCSLP+TPTR P
Sbjct: 272 VVASLRNLQLGKVKSLPSSWNVQVGSSGFGSPGSPGFVSPRGSILRPGFCSLPSTPTRVP 331

Query: 61  TGHGVGLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEW 115
              G+G LDF E G EEEP MERVESGR LRAKM E+L +ENSL   ES PS   PDV W
Sbjct: 332 GRSGIGYLDFCEEGCEEEPAMERVESGRGLRAKMFERLREENSLGRVESGPSGGAPDVGW 391

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG046330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135688.1	7.2e-60	100.00	PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis sativus]	[more]
KGN66203.1	7.2e-60	100.00	hypothetical protein Csa_1G575190 [Cucumis sativus]	[more]
NP_001315383.1	1.0e-58	98.25	zinc finger CCCH domain-containing protein 49-like [Cucumis melo] >AGL76984.1 zi...	[more]
XP_022961034.1	5.2e-50	85.96	zinc finger CCCH domain-containing protein 20 [Cucurbita moschata]	[more]
XP_023516367.1	5.2e-50	85.96	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_UNG046330.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19810.1	2.3e-23	55.28	CCCH-type zinc finger family protein	[more]
AT4G29190.1	3.7e-18	51.69	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	5.2e-04	63.64	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

BLAST of CsaV3_UNG046330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82199\|C3H20_ARATH	4.1e-22	55.28	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9M0G2\|C3H49_ARATH	6.7e-17	51.69	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9FU27\|C3H2_ORYSJ	1.1e-08	39.20	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q6L4N4\|C3H35_ORYSJ	4.5e-05	52.94	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CsaV3_UNG046330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWQ7\|A0A0A0LWQ7_CUCSA	4.8e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575190 PE=4 SV=1	[more]
tr\|A0A1S3BQ41\|A0A1S3BQ41_CUCME	6.9e-59	98.25	zinc finger CCCH domain-containing protein 49-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|R4QQJ8\|R4QQJ8_CUCME	6.9e-59	98.25	Zinc finger CCCH domain-containing protein OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
tr\|A0A2N9IKS7\|A0A2N9IKS7_FAGSY	1.1e-32	67.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52602 PE=4 SV=1	[more]
tr\|A0A251NEY3\|A0A251NEY3_PRUPE	4.2e-32	64.29	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G216200 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_UNG046330	CsaV3_UNG046330	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_UNG046330.1.cds2	CsaV3_UNG046330.1.cds2	CDS
CsaV3_UNG046330.1.cds1	CsaV3_UNG046330.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_UNG046330.1.exon2	CsaV3_UNG046330.1.exon2	exon
CsaV3_UNG046330.1.exon1	CsaV3_UNG046330.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_UNG046330.1	CsaV3_UNG046330.1-protein	polypeptide