CsaV3_7G030580.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G030580.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 19351472 .. 19351810 (+)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATAATCCGCAAAGAACAAAGCAAAGGGCTAGGCGATTTGATACACACGTAGCCACATTTCGTATACTCCTCCCGCCTCGGGCTCGCACTGTGAATTGGGAAACTCGTTTCTCACTGATCTGATGGTGTGGCGATGCCGAAAACAAACTTTAATTTAATCTTCATCTCCTCATTGACCGTACAAACTTCAAAATTTGTGAAACTGAAACAGCAATAGACAAAGCTAATCCCAATTCCAAGAGACAAATTCCACAGATCCTTTGCTCAAATTTGCAGCAAAATCACCGCGACCTGATTGCTATGTCGAGTCGGCCAATCATTACTTTCTCTTAG

mRNA sequence

ATGGAGCATAATCCGCAAAGAACAAAGCAAAGGGCTAGGCGATTTGATACACACGTAGCCACATTTCGTATACTCCTCCCGCCTCGGGCTCGCACTGTGAATTGGGAAACTCCAATAGACAAAGCTAATCCCAATTCCAAGAGACAAATTCCACAGATCCTTTGCTCAAATTTGCAGCAAAATCACCGCGACCTGATTGCTATGTCGAGTCGGCCAATCATTACTTTCTCTTAG

Coding sequence (CDS)

ATGGAGCATAATCCGCAAAGAACAAAGCAAAGGGCTAGGCGATTTGATACACACGTAGCCACATTTCGTATACTCCTCCCGCCTCGGGCTCGCACTGTGAATTGGGAAACTCCAATAGACAAAGCTAATCCCAATTCCAAGAGACAAATTCCACAGATCCTTTGCTCAAATTTGCAGCAAAATCACCGCGACCTGATTGCTATGTCGAGTCGGCCAATCATTACTTTCTCTTAG

Protein sequence

MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQNHRDLIAMSSRPIITFS
Homology
[Close]
BLAST of CsaV3_7G030580.1 vs. NCBI nr
Match: KGN45078.1 (hypothetical protein Csa_7G420710 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60
          MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ
Sbjct: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60

Query: 61 NHRDLIAMSSRPIITFS 78
          NHRDLIAMSSRPIITFS
Sbjct: 61 NHRDLIAMSSRPIITFS 77

[Close]
BLAST of CsaV3_7G030580.1 vs. TrEMBL
Match: tr|A0A0A0K6G9|A0A0A0K6G9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420710 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60
          MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ
Sbjct: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60

Query: 61 NHRDLIAMSSRPIITFS 78
          NHRDLIAMSSRPIITFS
Sbjct: 61 NHRDLIAMSSRPIITFS 77

The following BLAST results are available for this feature:
BLAST of CsaV3_7G030580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45078.12.8e-36100.00hypothetical protein Csa_7G420710 [Cucumis sativus][more]
BLAST of CsaV3_7G030580.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G030580.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G030580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K6G9|A0A0A0K6G9_CUCSA1.8e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G030580CsaV3_7G030580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G030580.1.exon1CsaV3_7G030580.1.exon1exon
CsaV3_7G030580.1.exon2CsaV3_7G030580.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G030580.1.cds1CsaV3_7G030580.1.cds1CDS
CsaV3_7G030580.1.cds2CsaV3_7G030580.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G030580.1CsaV3_7G030580.1-proteinpolypeptide