CsaV3_7G022670.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G022670.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGypsy/ty3 element polyprotein
Locationchr7 : 11529695 .. 11529848 (-)
Sequence length154
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

mRNA sequence

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

Coding sequence (CDS)

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

Protein sequence

MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARASQX
Homology
[Close]
BLAST of CsaV3_7G022670.1 vs. NCBI nr
Match: ADN34034.1 (gypsy/ty3 element polyprotein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+GTFT  LDPVI  +VFAMR VGLE+M+D  +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARAS 256

[Close]
BLAST of CsaV3_7G022670.1 vs. NCBI nr
Match: ADN34016.1 (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-05
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMAR 49
           MA++VL GTFTN LDP I  +VFAMR VGLE++M+A QL E+K E+ +
Sbjct: 179 MAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEVTK 226

[Close]
BLAST of CsaV3_7G022670.1 vs. TrEMBL
Match: tr|E5GC35|E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-09
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+GTFT  LDPVI  +VFAMR VGLE+M+D  +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARAS 256

[Close]
BLAST of CsaV3_7G022670.1 vs. TrEMBL
Match: tr|E5GC18|E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.6e-06
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMAR 49
           MA++VL GTFTN LDP I  +VFAMR VGLE++M+A QL E+K E+ +
Sbjct: 179 MAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEVTK 226

The following BLAST results are available for this feature:
BLAST of CsaV3_7G022670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34034.11.3e-0868.00gypsy/ty3 element polyprotein, partial [Cucumis melo subsp. melo][more]
ADN34016.11.3e-0560.42ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of CsaV3_7G022670.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022670.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC35|E5GC35_CUCME8.3e-0968.00Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 P... [more]
tr|E5GC18|E5GC18_CUCME8.6e-0660.42Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G022670CsaV3_7G022670gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022670.1.cds1CsaV3_7G022670.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022670.1.exon1CsaV3_7G022670.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G022670.1CsaV3_7G022670.1-proteinpolypeptide