CsaV3_7G022670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G022670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGypsy/ty3 element polyprotein
Locationchr7 : 11529695 .. 11529848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

mRNA sequence

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

Coding sequence (CDS)

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

Protein sequence

MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARASQX
Homology
[Close]
BLAST of CsaV3_7G022670 vs. NCBI nr
Match: ADN34034.1 (gypsy/ty3 element polyprotein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+GTFT  LDPVI  +VFAMR VGLE+M+D  +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARAS 256

[Close]
BLAST of CsaV3_7G022670 vs. NCBI nr
Match: ADN34016.1 (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-05
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMAR 49
           MA++VL GTFTN LDP I  +VFAMR VGLE++M+A QL E+K E+ +
Sbjct: 179 MAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEVTK 226

[Close]
BLAST of CsaV3_7G022670 vs. TrEMBL
Match: tr|E5GC35|E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-09
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+GTFT  LDPVI  +VFAMR VGLE+M+D  +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARAS 256

[Close]
BLAST of CsaV3_7G022670 vs. TrEMBL
Match: tr|E5GC18|E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.6e-06
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMAR 49
           MA++VL GTFTN LDP I  +VFAMR VGLE++M+A QL E+K E+ +
Sbjct: 179 MAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEVTK 226

The following BLAST results are available for this feature:
BLAST of CsaV3_7G022670 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34034.11.3e-0868.00gypsy/ty3 element polyprotein, partial [Cucumis melo subsp. melo][more]
ADN34016.11.3e-0560.42ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of CsaV3_7G022670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC35|E5GC35_CUCME8.3e-0968.00Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 P... [more]
tr|E5GC18|E5GC18_CUCME8.6e-0660.42Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G022670.1CsaV3_7G022670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G022670Watermelon (97103) v2cucwmbB544
CsaV3_7G022670Watermelon (97103) v2cucwmbB582
CsaV3_7G022670Wax gourdcucwgoB696
CsaV3_7G022670Wax gourdcucwgoB708
CsaV3_7G022670Cucumber (Chinese Long) v3cuccucB215
CsaV3_7G022670Silver-seed gourdcarcucB0380
CsaV3_7G022670Silver-seed gourdcarcucB0426
CsaV3_7G022670Silver-seed gourdcarcucB0572
CsaV3_7G022670Cucumber (Gy14) v2cgybcucB307
CsaV3_7G022670Cucumber (Gy14) v2cgybcucB347
CsaV3_7G022670Cucumber (Gy14) v1cgycucB161
CsaV3_7G022670Cucumber (Gy14) v1cgycucB361
CsaV3_7G022670Cucurbita maxima (Rimu)cmacucB0174
CsaV3_7G022670Cucurbita maxima (Rimu)cmacucB0640
CsaV3_7G022670Cucurbita maxima (Rimu)cmacucB0685
CsaV3_7G022670Cucurbita moschata (Rifu)cmocucB0156
CsaV3_7G022670Cucurbita moschata (Rifu)cmocucB0624
CsaV3_7G022670Cucurbita moschata (Rifu)cmocucB0670
CsaV3_7G022670Cucurbita pepo (Zucchini)cpecucB0324
CsaV3_7G022670Cucurbita pepo (Zucchini)cpecucB0372
CsaV3_7G022670Cucurbita pepo (Zucchini)cpecucB0864
CsaV3_7G022670Wild cucumber (PI 183967)cpicucB376
CsaV3_7G022670Wild cucumber (PI 183967)cpicucB414
CsaV3_7G022670Bottle gourd (USVL1VR-Ls)cuclsiB527
CsaV3_7G022670Bottle gourd (USVL1VR-Ls)cuclsiB533
CsaV3_7G022670Melon (DHL92) v3.5.1cucmeB535
CsaV3_7G022670Melon (DHL92) v3.5.1cucmeB551
CsaV3_7G022670Melon (DHL92) v3.6.1cucmedB516
CsaV3_7G022670Melon (DHL92) v3.6.1cucmedB539
CsaV3_7G022670Watermelon (Charleston Gray)cucwcgB536
CsaV3_7G022670Watermelon (Charleston Gray)cucwcgB566
CsaV3_7G022670Watermelon (97103) v1cucwmB578
CsaV3_7G022670Watermelon (97103) v1cucwmB630