CsaV3_7G021150.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G021150.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 9570306 .. 9571751 (-)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTAATAATAATAATATTTTATTATTATTATTTAAAATTTTAAAAAATAAATGTTTTTTTTTCTTTCTCTCTCCCCTCTCTCACAGGATGCAACACCCCCACCATCTTGTTTCTCCTTCTCCCTTTTCCCGTAACCTACCCAGCAGCAACCTACCTTCTTCTCTTCTTCTTTCTATTTTCCGTTCTATTCTACAGCCAACCACCTTTCGATCTCACGTCGACTGCCTAGCTCATCACGTCCTGAACTGTCGTGTACCAGTTTTGTTCGTGTGGTTCTTCATCTATTGGTCGGGGATCGTCTGCAGCGTCTTCATCCGCCAACCACCAACTCCATCAGGTCTTCATCCGCTACCTGTTAAGCAACCGTCGTCAGGTGCCTACTGTGAACCTGAGTCGAACCCAAGCTGAAGGCACCAGATCCAAGCCGCCCATTCTTCTCTCCATCCGACCAAGCCATCCACTATCATTCGGGTTGGTCTGCTCCTTGAAGTTAGCCACCCGTGAGCCGCGCGTCGAGCCTCTTTTCCAAGCCAGCTGCGGGTTCTGTTTTGCACGAGAGTTTTCGTGTAGATTCGCTCACTGCTGCCTCTATTTTACTGTGAGTGGTTGAATTTTTATTGATAAAAATTGAAGTTTGGGTTGTAGTTGTTTCCAAAACGAATTCAAGTAATTGGTTGGATTAATTGTTGACCATTGTTCGATCTTAGGTTGAAGGTAACACTTGAATTCCTTGGGTTCACAACAAACATTAGATTTAGTTGGATCTCGATTCGCAAATATTTGGGTAAGTTGTGAAAAATCACATTGGAAGATATTGAATATTTTTGTTAATGTTTAGGTTCATTTTTCATAGACCTTAGCACGGTTAAGGAGCTTACCTAACTTTAAGGTAAGGGATTTTCACTATTGGACTCACCTATAAAGTGGGATATTTTGATGGTATGTTTATCTCTAAACTGAGTGACAAGGCGTGAATTGACATGCAAGAAGCAAAAAAAATTATGCAAAGAGTAGGTAAGGTCGTTATCAACTAAGGGTACTTACCTAAACTCCTTGACGAAAATTTATTTATAGTTTACCCTTGATTTTACCGTAGATAGAAGCAAGCAAGGGTGTCGAACCCAAGGGAGTGATCGATTTTTCCTTGAATAAAATGCTTGAATATATAGAGATTAGTAACAAAAGGAAGATAAAAATATTGAAAACAAATTGACGGAAAATTGTAGGAGGGAATGAGAAGGGGAGTTTGGTATGGAAAAAAACTCACAAAAGAGGGAGATAGTAGATATTGAATACCACGGTGGTAAGTGAGGCATGAGCTTAGCTTACATGAAATCTTATCATTGAATCAAAGAAGGTAAGGAAATTAAATTGTGCATAGCTTAAAAGAGAATTTGATTCAAGATTTCCTTGCAAGATCAAATTGCTTGATCTGGGAAAGAATT

mRNA sequence

ATGCAACACCCCCACCATCTTGTTTCTCCTTCTCCCTTTTCCCGTAACCTACCCAGCAGCAACCTACCTTCTTCTCTTCTTCTTTCTATTTTCCGTTCTATTCTACAGCCAACCACCTTTCGATCTCACGTCGACTGCCTAGCTCATCACGTCCTGAACTGTCGTGTACCAGTTTTGTTCGTGTGGTTCTTCATCTATTGGTCGGGGATCGTCTGCAGCGTCTTCATCCGCCAACCACCAACTCCATCAGGTCTTCATCCGCTACCTGTTAAGCAACCGTCGTCAGGTGCCTACTGTGAACCTGAGTCGAACCCAAGCTGA

Coding sequence (CDS)

ATGCAACACCCCCACCATCTTGTTTCTCCTTCTCCCTTTTCCCGTAACCTACCCAGCAGCAACCTACCTTCTTCTCTTCTTCTTTCTATTTTCCGTTCTATTCTACAGCCAACCACCTTTCGATCTCACGTCGACTGCCTAGCTCATCACGTCCTGAACTGTCGTGTACCAGTTTTGTTCGTGTGGTTCTTCATCTATTGGTCGGGGATCGTCTGCAGCGTCTTCATCCGCCAACCACCAACTCCATCAGGTCTTCATCCGCTACCTGTTAAGCAACCGTCGTCAGGTGCCTACTGTGAACCTGAGTCGAACCCAAGCTGA

Protein sequence

MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLFVWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS
Homology
[Close]
BLAST of CsaV3_7G021150.1 vs. NCBI nr
Match: KGN44083.1 (hypothetical protein Csa_7G176620 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60
           MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF
Sbjct: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60

Query: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 107
           VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS
Sbjct: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 106

[Close]
BLAST of CsaV3_7G021150.1 vs. TrEMBL
Match: tr|A0A0A0K3K8|A0A0A0K3K8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176620 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.4e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60
           MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF
Sbjct: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60

Query: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 107
           VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS
Sbjct: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 106

The following BLAST results are available for this feature:
BLAST of CsaV3_7G021150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44083.11.3e-55100.00hypothetical protein Csa_7G176620 [Cucumis sativus][more]
BLAST of CsaV3_7G021150.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G021150.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G021150.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3K8|A0A0A0K3K8_CUCSA8.4e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G021150CsaV3_7G021150gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G021150.1.cds1CsaV3_7G021150.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G021150.1.exon1CsaV3_7G021150.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G021150.1CsaV3_7G021150.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..106