CsaV3_7G021150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G021150
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 9570306 .. 9571751 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTAATAATAATAATATTTTATTATTATTATTTAAAATTTTAAAAAATAAATGTTTTTTTTTCTTTCTCTCTCCCCTCTCTCACAGGATGCAACACCCCCACCATCTTGTTTCTCCTTCTCCCTTTTCCCGTAACCTACCCAGCAGCAACCTACCTTCTTCTCTTCTTCTTTCTATTTTCCGTTCTATTCTACAGCCAACCACCTTTCGATCTCACGTCGACTGCCTAGCTCATCACGTCCTGAACTGTCGTGTACCAGTTTTGTTCGTGTGGTTCTTCATCTATTGGTCGGGGATCGTCTGCAGCGTCTTCATCCGCCAACCACCAACTCCATCAGGTCTTCATCCGCTACCTGTTAAGCAACCGTCGTCAGGTGCCTACTGTGAACCTGAGTCGAACCCAAGCTGAAGGCACCAGATCCAAGCCGCCCATTCTTCTCTCCATCCGACCAAGCCATCCACTATCATTCGGGTTGGTCTGCTCCTTGAAGTTAGCCACCCGTGAGCCGCGCGTCGAGCCTCTTTTCCAAGCCAGCTGCGGGTTCTGTTTTGCACGAGAGTTTTCGTGTAGATTCGCTCACTGCTGCCTCTATTTTACTGTGAGTGGTTGAATTTTTATTGATAAAAATTGAAGTTTGGGTTGTAGTTGTTTCCAAAACGAATTCAAGTAATTGGTTGGATTAATTGTTGACCATTGTTCGATCTTAGGTTGAAGGTAACACTTGAATTCCTTGGGTTCACAACAAACATTAGATTTAGTTGGATCTCGATTCGCAAATATTTGGGTAAGTTGTGAAAAATCACATTGGAAGATATTGAATATTTTTGTTAATGTTTAGGTTCATTTTTCATAGACCTTAGCACGGTTAAGGAGCTTACCTAACTTTAAGGTAAGGGATTTTCACTATTGGACTCACCTATAAAGTGGGATATTTTGATGGTATGTTTATCTCTAAACTGAGTGACAAGGCGTGAATTGACATGCAAGAAGCAAAAAAAATTATGCAAAGAGTAGGTAAGGTCGTTATCAACTAAGGGTACTTACCTAAACTCCTTGACGAAAATTTATTTATAGTTTACCCTTGATTTTACCGTAGATAGAAGCAAGCAAGGGTGTCGAACCCAAGGGAGTGATCGATTTTTCCTTGAATAAAATGCTTGAATATATAGAGATTAGTAACAAAAGGAAGATAAAAATATTGAAAACAAATTGACGGAAAATTGTAGGAGGGAATGAGAAGGGGAGTTTGGTATGGAAAAAAACTCACAAAAGAGGGAGATAGTAGATATTGAATACCACGGTGGTAAGTGAGGCATGAGCTTAGCTTACATGAAATCTTATCATTGAATCAAAGAAGGTAAGGAAATTAAATTGTGCATAGCTTAAAAGAGAATTTGATTCAAGATTTCCTTGCAAGATCAAATTGCTTGATCTGGGAAAGAATT

mRNA sequence

ATGCAACACCCCCACCATCTTGTTTCTCCTTCTCCCTTTTCCCGTAACCTACCCAGCAGCAACCTACCTTCTTCTCTTCTTCTTTCTATTTTCCGTTCTATTCTACAGCCAACCACCTTTCGATCTCACGTCGACTGCCTAGCTCATCACGTCCTGAACTGTCGTGTACCAGTTTTGTTCGTGTGGTTCTTCATCTATTGGTCGGGGATCGTCTGCAGCGTCTTCATCCGCCAACCACCAACTCCATCAGGTCTTCATCCGCTACCTGTTAAGCAACCGTCGTCAGGTGCCTACTGTGAACCTGAGTCGAACCCAAGCTGA

Coding sequence (CDS)

ATGCAACACCCCCACCATCTTGTTTCTCCTTCTCCCTTTTCCCGTAACCTACCCAGCAGCAACCTACCTTCTTCTCTTCTTCTTTCTATTTTCCGTTCTATTCTACAGCCAACCACCTTTCGATCTCACGTCGACTGCCTAGCTCATCACGTCCTGAACTGTCGTGTACCAGTTTTGTTCGTGTGGTTCTTCATCTATTGGTCGGGGATCGTCTGCAGCGTCTTCATCCGCCAACCACCAACTCCATCAGGTCTTCATCCGCTACCTGTTAAGCAACCGTCGTCAGGTGCCTACTGTGAACCTGAGTCGAACCCAAGCTGA

Protein sequence

MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLFVWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS
Homology
[Close]
BLAST of CsaV3_7G021150 vs. NCBI nr
Match: KGN44083.1 (hypothetical protein Csa_7G176620 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60
           MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF
Sbjct: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60

Query: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 107
           VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS
Sbjct: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 106

[Close]
BLAST of CsaV3_7G021150 vs. TrEMBL
Match: tr|A0A0A0K3K8|A0A0A0K3K8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176620 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.4e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60
           MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF
Sbjct: 1   MQHPHHLVSPSPFSRNLPSSNLPSSLLLSIFRSILQPTTFRSHVDCLAHHVLNCRVPVLF 60

Query: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 107
           VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS
Sbjct: 61  VWFFIYWSGIVCSVFIRQPPTPSGLHPLPVKQPSSGAYCEPESNPS 106

The following BLAST results are available for this feature:
BLAST of CsaV3_7G021150 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44083.11.3e-55100.00hypothetical protein Csa_7G176620 [Cucumis sativus][more]
BLAST of CsaV3_7G021150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G021150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G021150 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3K8|A0A0A0K3K8_CUCSA8.4e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G021150.1CsaV3_7G021150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..106

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G021150Silver-seed gourdcarcucB0924
CsaV3_7G021150Silver-seed gourdcarcucB0946
CsaV3_7G021150Cucumber (Gy14) v2cgybcucB347
CsaV3_7G021150Cucurbita maxima (Rimu)cmacucB0052
CsaV3_7G021150Cucurbita maxima (Rimu)cmacucB0585
CsaV3_7G021150Cucurbita moschata (Rifu)cmocucB0038
CsaV3_7G021150Cucurbita moschata (Rifu)cmocucB0575
CsaV3_7G021150Cucurbita pepo (Zucchini)cpecucB0733
CsaV3_7G021150Cucurbita pepo (Zucchini)cpecucB0991
CsaV3_7G021150Wild cucumber (PI 183967)cpicucB414
CsaV3_7G021150Bottle gourd (USVL1VR-Ls)cuclsiB539
CsaV3_7G021150Melon (DHL92) v3.5.1cucmeB541
CsaV3_7G021150Melon (DHL92) v3.6.1cucmedB528
CsaV3_7G021150Watermelon (Charleston Gray)cucwcgB554
CsaV3_7G021150Watermelon (97103) v1cucwmB600
CsaV3_7G021150Watermelon (97103) v2cucwmbB600
CsaV3_7G021150Wax gourdcucwgoB723