CsaV3_7G019920.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G019920.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 9166683 .. 9167048 (+)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCACCCCCAAAAAAAGTTTGGAATCGTTTTGCCTCTAAAGTCATTTTGAAGCTCGGCCGTGGTTTCTCGAAGCCATCGGAATCAATAACTCGAACGACACGGCGGTTTTTGAGTCGTCTCGGGTCTAGTGACTCCAGCGGAAGGCGGTGTTGCCGCTGCAGCTGCCACGACCAGCCCGAATATTGGCTCCAAGATCGTCCGAGTTTTGGGAATAATTGTAATACTAATTATTATATGGAAGTTGAATTTGAAAATGTAGAGGGGGAGGAATTGGAAGATGAAGCCGTGGATGAAAAGGCTGAGGAGTTTATTGCTAAGTTTCATGAATCTTTGAAGCTTGAAAGATTGCAACATTTTTGA

mRNA sequence

ATGCTTCCACCCCCAAAAAAAGTTTGGAATCGTTTTGCCTCTAAAGTCATTTTGAAGCTCGGCCGTGGTTTCTCGAAGCCATCGGAATCAATAACTCGAACGACACGGCGGTTTTTGAGTCGTCTCGGGTCTAGTGACTCCAGCGGAAGGCGGTGTTGCCGCTGCAGCTGCCACGACCAGCCCGAATATTGGCTCCAAGATCGTCCGAGTTTTGGGAATAATTGTAATACTAATTATTATATGGAAGTTGAATTTGAAAATGTAGAGGGGGAGGAATTGGAAGATGAAGCCGTGGATGAAAAGGCTGAGGAGTTTATTGCTAAGTTTCATGAATCTTTGAAGCTTGAAAGATTGCAACATTTTTGA

Coding sequence (CDS)

ATGCTTCCACCCCCAAAAAAAGTTTGGAATCGTTTTGCCTCTAAAGTCATTTTGAAGCTCGGCCGTGGTTTCTCGAAGCCATCGGAATCAATAACTCGAACGACACGGCGGTTTTTGAGTCGTCTCGGGTCTAGTGACTCCAGCGGAAGGCGGTGTTGCCGCTGCAGCTGCCACGACCAGCCCGAATATTGGCTCCAAGATCGTCCGAGTTTTGGGAATAATTGTAATACTAATTATTATATGGAAGTTGAATTTGAAAATGTAGAGGGGGAGGAATTGGAAGATGAAGCCGTGGATGAAAAGGCTGAGGAGTTTATTGCTAAGTTTCATGAATCTTTGAAGCTTGAAAGATTGCAACATTTTTGA

Protein sequence

MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQPEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEDEAVDEKAEEFIAKFHESLKLERLQHF

Homology

[Close]

BLAST of CsaV3_7G019920.1 vs. NCBI nr
Match: KGN44055.1 (hypothetical protein Csa_7G145980 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 3.5e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQ 60
           MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQ
Sbjct: 1   MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQ 60

Query: 61  PEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEXXAVDEKAEEFIAKFHESLKLERLQH 120
           PEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEXXAVDEKAEEFIAKFHESLKLERLQH
Sbjct: 61  PEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEXXAVDEKAEEFIAKFHESLKLERLQH 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]

BLAST of CsaV3_7G019920.1 vs. TrEMBL
Match: tr|A0A0A0K332|A0A0A0K332_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G145980 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQ 60
           MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQ
Sbjct: 1   MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSGRRCCRCSCHDQ 60

Query: 61  PEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEXXAVDEKAEEFIAKFHESLKLERLQH 120
           PEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEXXAVDEKAEEFIAKFHESLKLERLQH
Sbjct: 61  PEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEXXAVDEKAEEFIAKFHESLKLERLQH 120

Query: 121 F 122
           F
Sbjct: 121 F 121

The following BLAST results are available for this feature:

BLAST of CsaV3_7G019920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44055.1	3.5e-62	100.00	hypothetical protein Csa_7G145980 [Cucumis sativus]	[more]

BLAST of CsaV3_7G019920.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G019920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G019920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K332\|A0A0A0K332_CUCSA	2.3e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G145980 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G019920	CsaV3_7G019920	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G019920.1.exon1	CsaV3_7G019920.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G019920.1.cds1	CsaV3_7G019920.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G019920.1	CsaV3_7G019920.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 95..119 e-value: 2.5E-10 score: 39.6