CsaV3_7G012630.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G012630.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUlp1 protease family, C-terminal catalytic domain-containing protein
Locationchr7 : 6578429 .. 6579056 (+)
Sequence length306
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGTTTACAAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAACTATACAGTATGTCTTTGTAGATCCATCCCTCACCTCTGTCGGACACTCGCAAGAATCTCGAGTTCGACACTTATGCAGTAGATTGATGGTCTCAAAGATTAACGAAATAGTTCTTGCTCCTTTTAATCCTGGGTAAGTCAAGTTATTTTATTACTTGCATTGCAAAAAACTAGTACTAATATTTTGTATAATTAGGGGTCATTGGGCACTGCTGGCCATAAATGCATATGATGATATAGTATTTTACCTCGACTCACTAAGGACAACATCGAAGTCAACTATAAGATACGTCACCGACACGTAAGTTAATCTAGTATTTCATTTAGTGTTGATTCTTATATGCATGTACACAATATTTAAACTATTTGTTCAATCTTATCTTGTCAAAACAGAGCAATAGCGATGTTTCAGTCACAAAAGAACATTAAAAAAAGTAGAAAACAAACTTTATGGCTAACAGTAAAGGTAAGTATCAACTTTTAAAGTCATTAAATTTTTGTAGACTACTAGCAATTAGGATTACTTTGTTATTCAAATTTGTTGCTTTTATATAGTGTCCACTG

mRNA sequence

CTCGTTTACAAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAACTATACAGTATGTCTTTGTAGATCCATCCCTCACCTCTGTCGGACACTCGCAAGAATCTCGAGTTCGACACTTATGCAGTAGATTGATGGTCTCAAAGATTAACGAAATAGTTCTTGCTCCTTTTAATCCTGGGGGTCATTGGGCACTGCTGGCCATAAATGCATATGATGATATAGTATTTTACCTCGACTCACTAAGGACAACATCGAAGTCAACTATAAGATACGTCACCGACACGTAA

Coding sequence (CDS)

CTCGTTTACAAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAACTATACAGTATGTCTTTGTAGATCCATCCCTCACCTCTGTCGGACACTCGCAAGAATCTCGAGTTCGACACTTATGCAGTAGATTGATGGTCTCAAAGATTAACGAAATAGTTCTTGCTCCTTTTAATCCTGGGGGTCATTGGGCACTGCTGGCCATAAATGCATATGATGATATAGTATTTTACCTCGACTCACTAAGGACAACATCGAAGTCAACTATAAGATACGTCACCGACACGTAA

Protein sequence

LVYKFIIFCRYLYSSVLGSKETIQYVFVDPSLTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNPGGHWALLAINAYDDIVFYLDSLRTTSKSTIRYVTDT
Homology
[Close]
BLAST of CsaV3_7G012630.1 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 3   YKFIIFCRYLYSSVLGSKETIQYVFVDPSLTSVGHSQESRVRHLCSRLMVSKINEIVLAP 62
           +  + +  YLYS++LGSKE +QY+F+DPSLTS GHSQESRVR+LCSRLMVSK NEIVLAP
Sbjct: 70  FTLVAYMTYLYSAILGSKENVQYIFIDPSLTSTGHSQESRVRNLCSRLMVSKSNEIVLAP 129

Query: 63  FNPG 67
           FNPG
Sbjct: 130 FNPG 133

[Close]
BLAST of CsaV3_7G012630.1 vs. NCBI nr
Match: XP_011656204.1 (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 8   FCRYLYSSVLGSKETIQYVFVDPSLTSVGH-SQESRVRHLCSRLMVSKINEIVLAPFNPG 67
           F    Y + L S++   Y+FV PSL SVGH +QE R R+L SRLM SK N++VLAPFNPG
Sbjct: 290 FTLVAYMTYLHSQDVSNYIFVFPSLISVGHDTQEVRARNLSSRLMASKPNQLVLAPFNPG 349

[Close]
BLAST of CsaV3_7G012630.1 vs. NCBI nr
Match: PRQ38798.1 (hypothetical protein RchiOBHm_Chr4g0417951 [Rosa chinensis])

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-07
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDPS +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 59  IYMRHLWSLLKMKEEDHLYAFVDPSRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 118

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 119 GNHWLLAAINPFTALVYYFDPLGNTN 144

[Close]
BLAST of CsaV3_7G012630.1 vs. NCBI nr
Match: PRQ21563.1 (putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensis])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 413 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 472

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 473 GNHWLLAAINPFTALVYYFDPLGNTN 498

[Close]
BLAST of CsaV3_7G012630.1 vs. NCBI nr
Match: PRQ44716.1 (putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensis])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 302 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 361

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 362 GNHWLLAAINPFTALVYYFDPLGNTN 387

[Close]
BLAST of CsaV3_7G012630.1 vs. TrEMBL
Match: tr|A0A2P6QX76|A0A2P6QX76_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0417951 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDPS +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 59  IYMRHLWSLLKMKEEDHLYAFVDPSRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 118

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 119 GNHWLLAAINPFTALVYYFDPLGNTN 144

[Close]
BLAST of CsaV3_7G012630.1 vs. TrEMBL
Match: tr|A0A2P6PI11|A0A2P6PI11_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0240601 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 413 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 472

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 473 GNHWLLAAINPFTALVYYFDPLGNTN 498

[Close]
BLAST of CsaV3_7G012630.1 vs. TrEMBL
Match: tr|A0A2P6RE63|A0A2P6RE63_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0482291 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 302 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 361

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 362 GNHWLLAAINPFTALVYYFDPLGNTN 387

[Close]
BLAST of CsaV3_7G012630.1 vs. TrEMBL
Match: tr|A0A2P6S839|A0A2P6S839_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0318241 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +    E   Y FVDP  +++     ESR   L  RL  +++++++LAP+N 
Sbjct: 59  IYMRHLWSLLKMKNEDHLYAFVDPGRISNEAGKVESRSCALSLRLESAQVDQLILAPYNT 118

Query: 67  GGHWALLAINAYDDIVFYLDSL 88
           G HW L AIN Y  +++Y D L
Sbjct: 119 GNHWLLAAINPYTALLYYFDPL 140

[Close]
BLAST of CsaV3_7G012630.1 vs. TrEMBL
Match: tr|A0A2P6QQA8|A0A2P6QQA8_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0390571 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +    E   Y FVDP  +++     E+R   L  RL  +K+++++LA +N 
Sbjct: 413 IYMRHLWSLLKMRNEDHLYAFVDPGRISNEARKVEARSCALSLRLESAKLDQLILASYNT 472

Query: 67  GGHWALLAINAYDDIVFYLDSL 88
           G HW L AIN +  +V+Y D L
Sbjct: 473 GNHWLLAAINTFTTLVYYFDPL 494

The following BLAST results are available for this feature:
BLAST of CsaV3_7G012630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657210.12.4e-1973.44PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
XP_011656204.11.6e-0756.67PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
PRQ38798.14.6e-0737.21hypothetical protein RchiOBHm_Chr4g0417951 [Rosa chinensis][more]
PRQ21563.11.4e-0636.05putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensi... [more]
PRQ44716.11.4e-0636.05putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensi... [more]
BLAST of CsaV3_7G012630.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G012630.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G012630.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P6QX76|A0A2P6QX76_ROSCH3.1e-0737.21Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0417951 PE=4... [more]
tr|A0A2P6PI11|A0A2P6PI11_ROSCH8.9e-0736.05Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen... [more]
tr|A0A2P6RE63|A0A2P6RE63_ROSCH8.9e-0736.05Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen... [more]
tr|A0A2P6S839|A0A2P6S839_ROSCH8.9e-0737.80Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen... [more]
tr|A0A2P6QQA8|A0A2P6QQA8_ROSCH4.4e-0636.59Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR003653Peptidase_C48_C
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008234 cysteine-type peptidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G012630CsaV3_7G012630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G012630.1.exon1CsaV3_7G012630.1.exon1exon
CsaV3_7G012630.1.exon2CsaV3_7G012630.1.exon2exon
CsaV3_7G012630.1.exon3CsaV3_7G012630.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G012630.1.cds1CsaV3_7G012630.1.cds1CDS
CsaV3_7G012630.1.cds2CsaV3_7G012630.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G012630.1CsaV3_7G012630.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003653Ulp1 protease family, C-terminal catalytic domainPFAMPF02902Peptidase_C48coord: 56..92
e-value: 2.2E-6
score: 27.6
NoneNo IPR availableGENE3DG3DSA:3.40.395.10coord: 4..101
e-value: 2.2E-6
score: 29.5
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILYSSF54001Cysteine proteinasescoord: 24..97