CsaV3_7G012630 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G012630
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ulp1 protease family, C-terminal catalytic domain-containing protein
Location	chr7 : 6578429 .. 6579056 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTTTACAAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAACTATACAGTATGTCTTTGTAGATCCATCCCTCACCTCTGTCGGACACTCGCAAGAATCTCGAGTTCGACACTTATGCAGTAGATTGATGGTCTCAAAGATTAACGAAATAGTTCTTGCTCCTTTTAATCCTGGGTAAGTCAAGTTATTTTATTACTTGCATTGCAAAAAACTAGTACTAATATTTTGTATAATTAGGGGTCATTGGGCACTGCTGGCCATAAATGCATATGATGATATAGTATTTTACCTCGACTCACTAAGGACAACATCGAAGTCAACTATAAGATACGTCACCGACACGTAAGTTAATCTAGTATTTCATTTAGTGTTGATTCTTATATGCATGTACACAATATTTAAACTATTTGTTCAATCTTATCTTGTCAAAACAGAGCAATAGCGATGTTTCAGTCACAAAAGAACATTAAAAAAAGTAGAAAACAAACTTTATGGCTAACAGTAAAGGTAAGTATCAACTTTTAAAGTCATTAAATTTTTGTAGACTACTAGCAATTAGGATTACTTTGTTATTCAAATTTGTTGCTTTTATATAGTGTCCACTG

mRNA sequence

CTCGTTTACAAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAACTATACAGTATGTCTTTGTAGATCCATCCCTCACCTCTGTCGGACACTCGCAAGAATCTCGAGTTCGACACTTATGCAGTAGATTGATGGTCTCAAAGATTAACGAAATAGTTCTTGCTCCTTTTAATCCTGGGGGTCATTGGGCACTGCTGGCCATAAATGCATATGATGATATAGTATTTTACCTCGACTCACTAAGGACAACATCGAAGTCAACTATAAGATACGTCACCGACACGTAA

Coding sequence (CDS)

CTCGTTTACAAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAACTATACAGTATGTCTTTGTAGATCCATCCCTCACCTCTGTCGGACACTCGCAAGAATCTCGAGTTCGACACTTATGCAGTAGATTGATGGTCTCAAAGATTAACGAAATAGTTCTTGCTCCTTTTAATCCTGGGGGTCATTGGGCACTGCTGGCCATAAATGCATATGATGATATAGTATTTTACCTCGACTCACTAAGGACAACATCGAAGTCAACTATAAGATACGTCACCGACACGTAA

Protein sequence

LVYKFIIFCRYLYSSVLGSKETIQYVFVDPSLTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNPGGHWALLAINAYDDIVFYLDSLRTTSKSTIRYVTDT

Homology

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BLAST of CsaV3_7G012630 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 3   YKFIIFCRYLYSSVLGSKETIQYVFVDPSLTSVGHSQESRVRHLCSRLMVSKINEIVLAP 62
           +  + +  YLYS++LGSKE +QY+F+DPSLTS GHSQESRVR+LCSRLMVSK NEIVLAP
Sbjct: 70  FTLVAYMTYLYSAILGSKENVQYIFIDPSLTSTGHSQESRVRNLCSRLMVSKSNEIVLAP 129

Query: 63  FNPG 67
           FNPG
Sbjct: 130 FNPG 133

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BLAST of CsaV3_7G012630 vs. NCBI nr
Match: XP_011656204.1 (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 8   FCRYLYSSVLGSKETIQYVFVDPSLTSVGH-SQESRVRHLCSRLMVSKINEIVLAPFNPG 67
           F    Y + L S++   Y+FV PSL SVGH +QE R R+L SRLM SK N++VLAPFNPG
Sbjct: 290 FTLVAYMTYLHSQDVSNYIFVFPSLISVGHDTQEVRARNLSSRLMASKPNQLVLAPFNPG 349

[Close]

BLAST of CsaV3_7G012630 vs. NCBI nr
Match: PRQ38798.1 (hypothetical protein RchiOBHm_Chr4g0417951 [Rosa chinensis])

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-07
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDPS +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 59  IYMRHLWSLLKMKEEDHLYAFVDPSRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 118

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 119 GNHWLLAAINPFTALVYYFDPLGNTN 144

[Close]

BLAST of CsaV3_7G012630 vs. NCBI nr
Match: PRQ21563.1 (putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensis])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 413 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 472

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 473 GNHWLLAAINPFTALVYYFDPLGNTN 498

[Close]

BLAST of CsaV3_7G012630 vs. NCBI nr
Match: PRQ44716.1 (putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensis])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 302 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 361

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 362 GNHWLLAAINPFTALVYYFDPLGNTN 387

[Close]

BLAST of CsaV3_7G012630 vs. TrEMBL
Match: tr|A0A2P6QX76|A0A2P6QX76_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0417951 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDPS +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 59  IYMRHLWSLLKMKEEDHLYAFVDPSRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 118

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 119 GNHWLLAAINPFTALVYYFDPLGNTN 144

[Close]

BLAST of CsaV3_7G012630 vs. TrEMBL
Match: tr|A0A2P6PI11|A0A2P6PI11_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0240601 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 413 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 472

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 473 GNHWLLAAINPFTALVYYFDPLGNTN 498

[Close]

BLAST of CsaV3_7G012630 vs. TrEMBL
Match: tr|A0A2P6RE63|A0A2P6RE63_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0482291 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +   +E   Y FVDP  +++     E+R   L  RL  +++++++LAP+N 
Sbjct: 302 IYMRHLWSLLKMKEEDHLYAFVDPGRISNEAGKVEARSCALSLRLESAQLDQLILAPYNT 361

Query: 67  GGHWALLAINAYDDIVFYLDSLRTTS 92
           G HW L AIN +  +V+Y D L  T+
Sbjct: 362 GNHWLLAAINPFTALVYYFDPLGNTN 387

[Close]

BLAST of CsaV3_7G012630 vs. TrEMBL
Match: tr|A0A2P6S839|A0A2P6S839_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0318241 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +    E   Y FVDP  +++     ESR   L  RL  +++++++LAP+N 
Sbjct: 59  IYMRHLWSLLKMKNEDHLYAFVDPGRISNEAGKVESRSCALSLRLESAQVDQLILAPYNT 118

Query: 67  GGHWALLAINAYDDIVFYLDSL 88
           G HW L AIN Y  +++Y D L
Sbjct: 119 GNHWLLAAINPYTALLYYFDPL 140

[Close]

BLAST of CsaV3_7G012630 vs. TrEMBL
Match: tr|A0A2P6QQA8|A0A2P6QQA8_ROSCH (Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0390571 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 7   IFCRYLYSSVLGSKETIQYVFVDPS-LTSVGHSQESRVRHLCSRLMVSKINEIVLAPFNP 66
           I+ R+L+S +    E   Y FVDP  +++     E+R   L  RL  +K+++++LA +N 
Sbjct: 413 IYMRHLWSLLKMRNEDHLYAFVDPGRISNEARKVEARSCALSLRLESAKLDQLILASYNT 472

Query: 67  GGHWALLAINAYDDIVFYLDSL 88
           G HW L AIN +  +V+Y D L
Sbjct: 473 GNHWLLAAINTFTTLVYYFDPL 494

The following BLAST results are available for this feature:

BLAST of CsaV3_7G012630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657210.1	2.4e-19	73.44	PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus]	[more]
XP_011656204.1	1.6e-07	56.67	PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus]	[more]
PRQ38798.1	4.6e-07	37.21	hypothetical protein RchiOBHm_Chr4g0417951 [Rosa chinensis]	[more]
PRQ21563.1	1.4e-06	36.05	putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensi...	[more]
PRQ44716.1	1.4e-06	36.05	putative Ulp1 protease family catalytic domain-containing protein [Rosa chinensi...	[more]

BLAST of CsaV3_7G012630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G012630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G012630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P6QX76\|A0A2P6QX76_ROSCH	3.1e-07	37.21	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0417951 PE=4...	[more]
tr\|A0A2P6PI11\|A0A2P6PI11_ROSCH	8.9e-07	36.05	Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen...	[more]
tr\|A0A2P6RE63\|A0A2P6RE63_ROSCH	8.9e-07	36.05	Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen...	[more]
tr\|A0A2P6S839\|A0A2P6S839_ROSCH	8.9e-07	37.80	Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen...	[more]
tr\|A0A2P6QQA8\|A0A2P6QQA8_ROSCH	4.4e-06	36.59	Putative Ulp1 protease family catalytic domain-containing protein OS=Rosa chinen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008234	cysteine-type peptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **INTERPRO**
Term	Definition
IPR038765	Papain_like_cys_pep_sf
IPR003653	Peptidase_C48_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008234	cysteine-type peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G012630.1	CsaV3_7G012630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 56..92 e-value: 2.2E-6 score: 27.6
None	No IPR available	GENE3D	G3DSA:3.40.395.10		coord: 4..101 e-value: 2.2E-6 score: 29.5
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	SSF54001	Cysteine proteinases	coord: 24..97

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G012630	Melon (DHL92) v3.5.1	cucmeB544