CsaV3_7G000050.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G000050.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Protein RADIALIS-like
Location	chr7 : 120080 .. 121362 (+)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGGTAATGTATAAGCTTTCGAGTTAATTGGTGGATTATTACATGGTATCAGAGTATCACAGTTCAGTTTGTTTCTAAAATGTCATTCTCTGTACATCTCGTTGGATCTTAATTCTAATATATTTTGAAGCCTACAAGTGAAACGAGAGTGTTAAGGTATTGATATATAGCTAAATTTAGTGTTAATGTATTGACATATATATTTTGAACTCAATTTTTGTTTTGAACTTAATACTTGTATACCTTTATACAGATAAACACACGAGAATCTACCTTAAAAACAATTGATTATAAGAGAGAAGTAATTCGTCTATTTTATATTATTCATTTTCTTAAAAATGGTATTATTTACGATATTCTCTTTATAATTAATATTATATTTTTTTAATCTCACCATTGTTAAGCTGATCTAAATACAACATTCGTTTCGATTTTCGTGTTTATACGTGATAATATGTAGTTAGGAATTTTTTTTCCAATATTTCCATCAATAAAAATTTTATCTATGAAAATCAAGTTTTTATATATTGATACATTTTCTGGTAGAAGTTTCTGTAACACATTATTTTATTTAGAGAGCACATAATATCTAAAAAAGTTGGATTAAATCATTATCTTTATAGTAATTAATACAGTGTAGTATTAATATAGAAGATCACCTTATATTTGAAACGTATATTTTTGTCTCTAATAACTAGTCATGTTTTCAACTGATCTAGTTGATTTCAAACGAGGTACCCTAATTATTTTTCATGGAAAAAGAAAAACAAACAAACCCTCCTCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAATGTTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

mRNA sequence

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

Coding sequence (CDS)

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

Protein sequence

MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQEEMSISMNSSPPFGMASSLNLWLHVSIKNKQYNNSSSCKLSERPPSLFLFLETKAAPIP

Homology

[Close]

BLAST of CsaV3_7G000050.1 vs. NCBI nr
Match: XP_004151125.2 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical protein Csa_7G170600 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of CsaV3_7G000050.1 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 4.6e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CsaV3_7G000050.1 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQEEMS 86
          VKFIESGQV FPYRTSGGG+   M+
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMT 85

[Close]

BLAST of CsaV3_7G000050.1 vs. NCBI nr
Match: XP_022952072.1 (protein RADIALIS-like 1 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGGGNQ 82
          DVKFIESGQVPFPYRTSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]

BLAST of CsaV3_7G000050.1 vs. NCBI nr
Match: XP_023511620.1 (3-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 80/111 (72.07%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MASMSSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
           MASMSSHGS  TWTV QNKAFE+ALAVYDQDTPD+WLNVAKAV GKTAEEV+ HYALLVE
Sbjct: 1   MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 60

Query: 61  DVKFIESGQVPFPYRTSGGGNQE-----EMSISMNSSPPFGMASSLNLWLH 106
           DVKFIESGQVPFPYRTSGGG QE      M I +             LWLH
Sbjct: 61  DVKFIESGQVPFPYRTSGGGTQEFCLIPLMPIIILKPSHMNSYDFQQLWLH 111

[Close]

BLAST of CsaV3_7G000050.1 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-28
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGNQEEMS 86
            IE+G VPFP YRTSGG     +S
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLS 88

[Close]

BLAST of CsaV3_7G000050.1 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-27
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of CsaV3_7G000050.1 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 105.1 bits (261), Expect = 3.5e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CsaV3_7G000050.1 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-22
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of CsaV3_7G000050.1 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS SS  + +WT  ++K FE ALA +D+DTPDRW  +A+AVGGK+ EEVKRHY LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGQVPFP-YRTS 77
          V  IESG+ P P YR +
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]

BLAST of CsaV3_7G000050.1 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-27
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGNQEEMS 86
            IE+G VPFP YRTSGG     +S
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLS 88

[Close]

BLAST of CsaV3_7G000050.1 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-26
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of CsaV3_7G000050.1 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 5  SSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGG 79
          IESG+VPFP YRT+GG
Sbjct: 63 IESGKVPFPNYRTTGG 78

[Close]

BLAST of CsaV3_7G000050.1 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          V  IESG+ P P   S G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CsaV3_7G000050.1 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-22
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CsaV3_7G000050.1 vs. TrEMBL
Match: tr|A0A0A0K348|A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.4e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of CsaV3_7G000050.1 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CsaV3_7G000050.1 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-30
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTSGG 79
          VK IESG+VPFPYRTS G
Sbjct: 61 VKHIESGKVPFPYRTSRG 78

[Close]

BLAST of CsaV3_7G000050.1 vs. TrEMBL
Match: tr|A0A2R6RHD7|A0A2R6RHD7_ACTCH (Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07050 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSS GSG+WT  QNKAFEKALAVYD+DT DRW N+AKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASMSSRGSGSWTAKQNKAFEKALAVYDKDTTDRWYNIAKAVGGKTVEEVKRHYEILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQEEMS 86
          +K IE+GQVPFP YRT+GG +Q   S
Sbjct: 61 IKHIEAGQVPFPNYRTAGGSSQGSTS 86

[Close]

BLAST of CsaV3_7G000050.1 vs. TrEMBL
Match: tr|A0A2C9UGM6|A0A2C9UGM6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G163100 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 4  MSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 63
          MSS GSG+WT  QNKAFEKALAVYD+DTP+RW NVAKAVGGKTAEEVKRHY +LVEDVK+
Sbjct: 1  MSSRGSGSWTAQQNKAFEKALAVYDKDTPERWANVAKAVGGKTAEEVKRHYEILVEDVKY 60

Query: 64 IESGQVPFP-YRTSGG---GNQEEMSISMNS 91
          IESGQVPFP YRT+GG   GN ++    M +
Sbjct: 61 IESGQVPFPNYRTTGGSTRGNLDDQQKRMKN 91

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151125.2	1.4e-38	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical pr...	[more]
XP_008447024.1	4.6e-37	97.53	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022136064.1	1.8e-33	85.88	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_022952072.1	1.8e-33	91.46	protein RADIALIS-like 1 [Cucurbita moschata]	[more]
XP_023511620.1	1.5e-32	72.07	3-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_7G000050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	2.8e-28	69.41	RAD-like 1	[more]
AT2G21650.1	2.3e-27	72.15	Homeodomain-like superfamily protein	[more]
AT1G75250.1	3.5e-23	68.42	RAD-like 6	[more]
AT1G19510.1	2.3e-22	63.41	RAD-like 5	[more]
AT2G18328.1	2.0e-18	58.44	RAD-like 4	[more]

BLAST of CsaV3_7G000050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JVB8\|RADL1_ARATH	5.0e-27	69.41	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	4.2e-26	72.15	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	2.3e-24	69.74	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	2.8e-22	63.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	6.3e-22	68.42	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CsaV3_7G000050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K348\|A0A0A0K348_CUCSA	9.4e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1	[more]
tr\|A0A1S3BFW6\|A0A1S3BFW6_CUCME	3.0e-37	97.53	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
tr\|A0A1S3BGF6\|A0A1S3BGF6_CUCME	4.7e-30	83.33	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
tr\|A0A2R6RHD7\|A0A2R6RHD7_ACTCH	1.1e-28	75.58	Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]
tr\|A0A2C9UGM6\|A0A2C9UGM6_MANES	1.5e-28	73.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G163100 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G000050	CsaV3_7G000050	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G000050.1.exon1	CsaV3_7G000050.1.exon1	exon
CsaV3_7G000050.1.exon2	CsaV3_7G000050.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G000050.1.cds1	CsaV3_7G000050.1.cds1	CDS
CsaV3_7G000050.1.cds2	CsaV3_7G000050.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G000050.1	CsaV3_7G000050.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 9.7E-7 score: 38.4
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 3.18659E-6 score: 39.8662
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 3..71 e-value: 9.0E-21 score: 75.5
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..81
None	No IPR available	PANTHER	PTHR43952:SF14	PROTEIN RADIALIS-LIKE 1-RELATED	coord: 1..81
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 10..66