CsaV3_7G000050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtein RADIALIS-like
Locationchr7 : 120080 .. 121362 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGGTAATGTATAAGCTTTCGAGTTAATTGGTGGATTATTACATGGTATCAGAGTATCACAGTTCAGTTTGTTTCTAAAATGTCATTCTCTGTACATCTCGTTGGATCTTAATTCTAATATATTTTGAAGCCTACAAGTGAAACGAGAGTGTTAAGGTATTGATATATAGCTAAATTTAGTGTTAATGTATTGACATATATATTTTGAACTCAATTTTTGTTTTGAACTTAATACTTGTATACCTTTATACAGATAAACACACGAGAATCTACCTTAAAAACAATTGATTATAAGAGAGAAGTAATTCGTCTATTTTATATTATTCATTTTCTTAAAAATGGTATTATTTACGATATTCTCTTTATAATTAATATTATATTTTTTTAATCTCACCATTGTTAAGCTGATCTAAATACAACATTCGTTTCGATTTTCGTGTTTATACGTGATAATATGTAGTTAGGAATTTTTTTTCCAATATTTCCATCAATAAAAATTTTATCTATGAAAATCAAGTTTTTATATATTGATACATTTTCTGGTAGAAGTTTCTGTAACACATTATTTTATTTAGAGAGCACATAATATCTAAAAAAGTTGGATTAAATCATTATCTTTATAGTAATTAATACAGTGTAGTATTAATATAGAAGATCACCTTATATTTGAAACGTATATTTTTGTCTCTAATAACTAGTCATGTTTTCAACTGATCTAGTTGATTTCAAACGAGGTACCCTAATTATTTTTCATGGAAAAAGAAAAACAAACAAACCCTCCTCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAATGTTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

mRNA sequence

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

Coding sequence (CDS)

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

Protein sequence

MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQEEMSISMNSSPPFGMASSLNLWLHVSIKNKQYNNSSSCKLSERPPSLFLFLETKAAPIP
Homology
[Close]
BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_004151125.2 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical protein Csa_7G170600 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]
BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 4.6e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]
BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQEEMS 86
          VKFIESGQV FPYRTSGGG+   M+
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMT 85

[Close]
BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_022952072.1 (protein RADIALIS-like 1 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGGGNQ 82
          DVKFIESGQVPFPYRTSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]
BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_023511620.1 (3-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 80/111 (72.07%), Postives = 84/111 (75.68%), Query Frame = 0 

Query: 1   MASMSSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
           MASMSSHGS  TWTV QNKAFE+ALAVYDQDTPD+WLNVAKAV GKTAEEV+ HYALLVE
Sbjct: 1   MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 60

Query: 61  DVKFIESGQVPFPYRTSGGGNQE-----EMSISMNSSPPFGMASSLNLWLH 106
           DVKFIESGQVPFPYRTSGGG QE      M I +             LWLH
Sbjct: 61  DVKFIESGQVPFPYRTSGGGTQEFCLIPLMPIIILKPSHMNSYDFQQLWLH 111

[Close]
BLAST of CsaV3_7G000050 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-28
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGNQEEMS 86
            IE+G VPFP YRTSGG     +S
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLS 88

[Close]
BLAST of CsaV3_7G000050 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-27
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0 

Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]
BLAST of CsaV3_7G000050 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 105.1 bits (261), Expect = 3.5e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of CsaV3_7G000050 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-22
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]
BLAST of CsaV3_7G000050 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS SS  + +WT  ++K FE ALA +D+DTPDRW  +A+AVGGK+ EEVKRHY LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGQVPFP-YRTS 77
          V  IESG+ P P YR +
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]
BLAST of CsaV3_7G000050 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-27
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGNQEEMS 86
            IE+G VPFP YRTSGG     +S
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLS 88

[Close]
BLAST of CsaV3_7G000050 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-26
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0 

Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]
BLAST of CsaV3_7G000050 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 5  SSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGG 79
          IESG+VPFP YRT+GG
Sbjct: 63 IESGKVPFPNYRTTGG 78

[Close]
BLAST of CsaV3_7G000050 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          V  IESG+ P P   S G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of CsaV3_7G000050 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-22
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of CsaV3_7G000050 vs. TrEMBL
Match: tr|A0A0A0K348|A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.4e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]
BLAST of CsaV3_7G000050 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]
BLAST of CsaV3_7G000050 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-30
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTSGG 79
          VK IESG+VPFPYRTS G
Sbjct: 61 VKHIESGKVPFPYRTSRG 78

[Close]
BLAST of CsaV3_7G000050 vs. TrEMBL
Match: tr|A0A2R6RHD7|A0A2R6RHD7_ACTCH (Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07050 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSS GSG+WT  QNKAFEKALAVYD+DT DRW N+AKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASMSSRGSGSWTAKQNKAFEKALAVYDKDTTDRWYNIAKAVGGKTVEEVKRHYEILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQEEMS 86
          +K IE+GQVPFP YRT+GG +Q   S
Sbjct: 61 IKHIEAGQVPFPNYRTAGGSSQGSTS 86

[Close]
BLAST of CsaV3_7G000050 vs. TrEMBL
Match: tr|A0A2C9UGM6|A0A2C9UGM6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G163100 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0 

Query: 4  MSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 63
          MSS GSG+WT  QNKAFEKALAVYD+DTP+RW NVAKAVGGKTAEEVKRHY +LVEDVK+
Sbjct: 1  MSSRGSGSWTAQQNKAFEKALAVYDKDTPERWANVAKAVGGKTAEEVKRHYEILVEDVKY 60

Query: 64 IESGQVPFP-YRTSGG---GNQEEMSISMNS 91
          IESGQVPFP YRT+GG   GN ++    M +
Sbjct: 61 IESGQVPFPNYRTTGGSTRGNLDDQQKRMKN 91

The following BLAST results are available for this feature:
BLAST of CsaV3_7G000050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151125.21.4e-38100.00PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical pr... [more]
XP_008447024.14.6e-3797.53PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
XP_022136064.11.8e-3385.88protein RADIALIS-like 1 [Momordica charantia][more]
XP_022952072.11.8e-3391.46protein RADIALIS-like 1 [Cucurbita moschata][more]
XP_023511620.11.5e-3272.073-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_7G000050 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.12.8e-2869.41RAD-like 1[more]
AT2G21650.12.3e-2772.15Homeodomain-like superfamily protein[more]
AT1G75250.13.5e-2368.42RAD-like 6[more]
AT1G19510.12.3e-2263.41RAD-like 5[more]
AT2G18328.12.0e-1858.44RAD-like 4[more]
BLAST of CsaV3_7G000050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4JVB8|RADL1_ARATH5.0e-2769.41Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
sp|Q9SIJ5|RADL2_ARATH4.2e-2672.15Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
sp|Q58FS3|RAD_ANTMA2.3e-2469.74Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
sp|Q6NNN0|RADL3_ARATH2.8e-2263.75Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
sp|Q1A173|RADL6_ARATH6.3e-2268.42Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
BLAST of CsaV3_7G000050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K348|A0A0A0K348_CUCSA9.4e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1[more]
tr|A0A1S3BFW6|A0A1S3BFW6_CUCME3.0e-3797.53protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1[more]
tr|A0A1S3BGF6|A0A1S3BGF6_CUCME4.7e-3083.33protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1[more]
tr|A0A2R6RHD7|A0A2R6RHD7_ACTCH1.1e-2875.58Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A2C9UGM6|A0A2C9UGM6_MANES1.5e-2873.63Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G163100 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000050.1CsaV3_7G000050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
e-value: 9.7E-7
score: 38.4
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 11..54
e-value: 3.18659E-6
score: 39.8662
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 3..71
e-value: 9.0E-21
score: 75.5
NoneNo IPR availablePANTHERPTHR43952FAMILY NOT NAMEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR43952:SF14PROTEIN RADIALIS-LIKE 1-RELATEDcoord: 1..81
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 10..66

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000050Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000050Silver-seed gourdcarcucB0201
CsaV3_7G000050Silver-seed gourdcarcucB0347
CsaV3_7G000050Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000050Cucumber (Gy14) v2cgybcucB348
CsaV3_7G000050Cucumber (Gy14) v1cgycucB141
CsaV3_7G000050Cucumber (Gy14) v1cgycucB572
CsaV3_7G000050Cucurbita maxima (Rimu)cmacucB0177
CsaV3_7G000050Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G000050Cucurbita maxima (Rimu)cmacucB0689
CsaV3_7G000050Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000050Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000050Cucurbita moschata (Rifu)cmocucB0161
CsaV3_7G000050Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G000050Cucurbita moschata (Rifu)cmocucB0674
CsaV3_7G000050Cucurbita moschata (Rifu)cmocucB0757
CsaV3_7G000050Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000050Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G000050Cucurbita pepo (Zucchini)cpecucB0371
CsaV3_7G000050Cucurbita pepo (Zucchini)cpecucB0869
CsaV3_7G000050Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000050Wild cucumber (PI 183967)cpicucB118
CsaV3_7G000050Wild cucumber (PI 183967)cpicucB415
CsaV3_7G000050Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000050Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G000050Melon (DHL92) v3.5.1cucmeB530
CsaV3_7G000050Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G000050Melon (DHL92) v3.6.1cucmedB518
CsaV3_7G000050Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G000050Watermelon (Charleston Gray)cucwcgB558
CsaV3_7G000050Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G000050Watermelon (97103) v1cucwmB634
CsaV3_7G000050Watermelon (97103) v1cucwmB640
CsaV3_7G000050Watermelon (97103) v2cucwmbB539
CsaV3_7G000050Watermelon (97103) v2cucwmbB549
CsaV3_7G000050Wax gourdcucwgoB692
CsaV3_7G000050Wax gourdcucwgoB706