CsaV3_6G041310.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G041310.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Aspartic acid proteinase inhibitor
Location	chr6 : 23990739 .. 23991316 (+)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATCAAGTCATGGCTGCCGCTGGAATTGGAACAATTCGATCGTGATTGGTACTGGAATGCGATACCGAATGATCCAAATAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTTTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAATGATGCAATGATGATGGATGCATCAATGATCTACAATCTCAACAAATTATCTACTCTCTCTCACTTGTTTATGTGTATGCATGTTATACATGCAATTGGAATGAAAAGTAGTACAAATTTAGATAAAATAAAAGTATAAAAAGCAGGTATGCTTTTGGTGTGTTTTCATCTAAATTCTCTCTCGTTTTAATTTATCTAGACCCAAAATTGAGACAGATTCAAAATCTAGAATTACGCCCACATGATGACTTCAACATTTTCTTGCAC

mRNA sequence

AAATCAAGTCATGGCTGCCGCTGGAATTGGAACAATTCGATCGTGATTGGTACTGGAATGCGATACCGAATGATCCAAATAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTTTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAA

Coding sequence (CDS)

AAATCAAGTCATGGCTGCCGCTGGAATTGGAACAATTCGATCGTGATTGGTACTGGAATGCGATACCGAATGATCCAAATAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTTTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAA

Protein sequence

KSSHGCRWNWNNSIVIGTGMRYRMIQIVIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMENTSKNVKQVVSFVPLR

Homology

[Close]

BLAST of CsaV3_6G041310.1 vs. NCBI nr
Match: XP_011658473.1 (PREDICTED: uncharacterized protein LOC105436020 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 6.5e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMEN 87
           VIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMEN
Sbjct: 26  VIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMEN 85

Query: 88  TSKNVKQVVSFVPLR 103
           TSKNVKQVVSFVPLR
Sbjct: 86  TSKNVKQVVSFVPLR 100

[Close]

BLAST of CsaV3_6G041310.1 vs. NCBI nr
Match: XP_004151410.1 (PREDICTED: uncharacterized protein LOC101213950 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVME 87
           VIEMAEYAVKEQGE+ LILNSV  GQIV VFL G+TYYNLLILAHHP TFQGFYS IV+E
Sbjct: 25  VIEMAEYAVKEQGEDHLILNSVADGQIVTVFLGGNTYYNLLILAHHPRTFQGFYSAIVLE 84

Query: 88  NTSKNVKQVVSFVPL 102
           NTSKNVK+VVSF  L
Sbjct: 85  NTSKNVKEVVSFFRL 99

[Close]

BLAST of CsaV3_6G041310.1 vs. NCBI nr
Match: ABB96307.1 (aspartic acid proteinase inhibitor, partial [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  +++SFVPL
Sbjct: 86  EKASDNSLKLISFVPL 101

[Close]

BLAST of CsaV3_6G041310.1 vs. NCBI nr
Match: AAT67162.1 (aspartic protease inhibitor [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 86  EKASDNSLKLVAFVPL 101

[Close]

BLAST of CsaV3_6G041310.1 vs. NCBI nr
Match: 2KXG_A (Chain A, The solution structure of the squash aspartic acid proteinase inhibitor (SQAPI))

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 19  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 78

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 79  EKASDNSLKLVAFVPL 94

[Close]

BLAST of CsaV3_6G041310.1 vs. TrEMBL
Match: tr|Q2V8I8|Q2V8I8_CUCMA (Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  +++SFVPL
Sbjct: 86  EKASDNSLKLISFVPL 101

[Close]

BLAST of CsaV3_6G041310.1 vs. TrEMBL
Match: tr|Q6DLC9|Q6DLC9_CUCMA (Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 86  EKASDNSLKLVAFVPL 101

[Close]

BLAST of CsaV3_6G041310.1 vs. TrEMBL
Match: tr|Q2PZK2|Q2PZK2_CUCMA (Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 27  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 86

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 87  EKASDNSLKLVAFVPL 102

[Close]

BLAST of CsaV3_6G041310.1 vs. TrEMBL
Match: tr|O81131|O81131_CUCMA (Aspartic proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API-1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 18  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 77

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 78  EKASDNSLKLVAFVPL 93

[Close]

BLAST of CsaV3_6G041310.1 vs. TrEMBL
Match: tr|Q6DLC8|Q6DLC8_CUCMA (Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     + YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPDWNNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  +++SFVPL
Sbjct: 86  EKASDNSLKLISFVPL 101

The following BLAST results are available for this feature:

BLAST of CsaV3_6G041310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658473.1	6.5e-33	100.00	PREDICTED: uncharacterized protein LOC105436020 [Cucumis sativus]	[more]
XP_004151410.1	1.2e-23	82.67	PREDICTED: uncharacterized protein LOC101213950 [Cucumis sativus]	[more]
ABB96307.1	2.5e-08	47.37	aspartic acid proteinase inhibitor, partial [Cucurbita maxima]	[more]
AAT67162.1	4.2e-08	47.37	aspartic protease inhibitor [Cucurbita maxima]	[more]
2KXG_A	4.2e-08	47.37	Chain A, The solution structure of the squash aspartic acid proteinase inhibitor...	[more]

BLAST of CsaV3_6G041310.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G041310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G041310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q2V8I8\|Q2V8I8_CUCMA	1.6e-08	47.37	Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API...	[more]
tr\|Q6DLC9\|Q6DLC9_CUCMA	2.8e-08	47.37	Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=1 SV=1	[more]
tr\|Q2PZK2\|Q2PZK2_CUCMA	2.8e-08	47.37	Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 PE=4 S...	[more]
tr\|O81131\|O81131_CUCMA	2.8e-08	47.37	Aspartic proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API-1 PE...	[more]
tr\|Q6DLC8\|Q6DLC8_CUCMA	4.8e-08	46.05	Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G041310	CsaV3_6G041310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G041310.1.exon1	CsaV3_6G041310.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G041310.1.cds1	CsaV3_6G041310.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G041310.1	CsaV3_6G041310.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 13..102 e-value: 1.1E-23 score: 85.0