CsaV3_6G041310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041310
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionAspartic acid proteinase inhibitor
Locationchr6 : 23990739 .. 23991316 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAATCAAGTCATGGCTGCCGCTGGAATTGGAACAATTCGATCGTGATTGGTACTGGAATGCGATACCGAATGATCCAAATAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTTTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAATGATGCAATGATGATGGATGCATCAATGATCTACAATCTCAACAAATTATCTACTCTCTCTCACTTGTTTATGTGTATGCATGTTATACATGCAATTGGAATGAAAAGTAGTACAAATTTAGATAAAATAAAAGTATAAAAAGCAGGTATGCTTTTGGTGTGTTTTCATCTAAATTCTCTCTCGTTTTAATTTATCTAGACCCAAAATTGAGACAGATTCAAAATCTAGAATTACGCCCACATGATGACTTCAACATTTTCTTGCAC

mRNA sequence

AAATCAAGTCATGGCTGCCGCTGGAATTGGAACAATTCGATCGTGATTGGTACTGGAATGCGATACCGAATGATCCAAATAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTTTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAA

Coding sequence (CDS)

AAATCAAGTCATGGCTGCCGCTGGAATTGGAACAATTCGATCGTGATTGGTACTGGAATGCGATACCGAATGATCCAAATAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTTTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAA

Protein sequence

KSSHGCRWNWNNSIVIGTGMRYRMIQIVIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMENTSKNVKQVVSFVPLR
Homology
[Close]
BLAST of CsaV3_6G041310 vs. NCBI nr
Match: XP_011658473.1 (PREDICTED: uncharacterized protein LOC105436020 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 6.5e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMEN 87
           VIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMEN
Sbjct: 26  VIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVMEN 85

Query: 88  TSKNVKQVVSFVPLR 103
           TSKNVKQVVSFVPLR
Sbjct: 86  TSKNVKQVVSFVPLR 100

[Close]
BLAST of CsaV3_6G041310 vs. NCBI nr
Match: XP_004151410.1 (PREDICTED: uncharacterized protein LOC101213950 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFYSTIVME 87
           VIEMAEYAVKEQGE+ LILNSV  GQIV VFL G+TYYNLLILAHHP TFQGFYS IV+E
Sbjct: 25  VIEMAEYAVKEQGEDHLILNSVADGQIVTVFLGGNTYYNLLILAHHPRTFQGFYSAIVLE 84

Query: 88  NTSKNVKQVVSFVPL 102
           NTSKNVK+VVSF  L
Sbjct: 85  NTSKNVKEVVSFFRL 99

[Close]
BLAST of CsaV3_6G041310 vs. NCBI nr
Match: ABB96307.1 (aspartic acid proteinase inhibitor, partial [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  +++SFVPL
Sbjct: 86  EKASDNSLKLISFVPL 101

[Close]
BLAST of CsaV3_6G041310 vs. NCBI nr
Match: AAT67162.1 (aspartic protease inhibitor [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 86  EKASDNSLKLVAFVPL 101

[Close]
BLAST of CsaV3_6G041310 vs. NCBI nr
Match: 2KXG_A (Chain A, The solution structure of the squash aspartic acid proteinase inhibitor (SQAPI))

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 19  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 78

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 79  EKASDNSLKLVAFVPL 94

[Close]
BLAST of CsaV3_6G041310 vs. TrEMBL
Match: tr|Q2V8I8|Q2V8I8_CUCMA (Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  +++SFVPL
Sbjct: 86  EKASDNSLKLISFVPL 101

[Close]
BLAST of CsaV3_6G041310 vs. TrEMBL
Match: tr|Q6DLC9|Q6DLC9_CUCMA (Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 86  EKASDNSLKLVAFVPL 101

[Close]
BLAST of CsaV3_6G041310 vs. TrEMBL
Match: tr|Q2PZK2|Q2PZK2_CUCMA (Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 27  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 86

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 87  EKASDNSLKLVAFVPL 102

[Close]
BLAST of CsaV3_6G041310 vs. TrEMBL
Match: tr|O81131|O81131_CUCMA (Aspartic proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API-1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     D YYNL++ A H PH F  FY+ +V+
Sbjct: 18  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVL 77

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  ++V+FVPL
Sbjct: 78  EKASDNSLKLVAFVPL 93

[Close]
BLAST of CsaV3_6G041310 vs. TrEMBL
Match: tr|Q6DLC8|Q6DLC8_CUCMA (Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 28  VIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGDTYYNLLILA-HHPHTFQGFYSTIVM 87
           V E+AE+A+K+  E+ LIL  V AGQI++     + YYNL++ A H PH F  FY+ +V+
Sbjct: 26  VKEIAEFALKQHAEQNLILAGVDAGQIIKGIPDWNNYYNLILSAKHSPHEFSKFYNVVVL 85

Query: 88  ENTSKNVKQVVSFVPL 102
           E  S N  +++SFVPL
Sbjct: 86  EKASDNSLKLISFVPL 101

The following BLAST results are available for this feature:
BLAST of CsaV3_6G041310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658473.16.5e-33100.00PREDICTED: uncharacterized protein LOC105436020 [Cucumis sativus][more]
XP_004151410.11.2e-2382.67PREDICTED: uncharacterized protein LOC101213950 [Cucumis sativus][more]
ABB96307.12.5e-0847.37aspartic acid proteinase inhibitor, partial [Cucurbita maxima][more]
AAT67162.14.2e-0847.37aspartic protease inhibitor [Cucurbita maxima][more]
2KXG_A4.2e-0847.37Chain A, The solution structure of the squash aspartic acid proteinase inhibitor... [more]
BLAST of CsaV3_6G041310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q2V8I8|Q2V8I8_CUCMA1.6e-0847.37Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API... [more]
tr|Q6DLC9|Q6DLC9_CUCMA2.8e-0847.37Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=1 SV=1[more]
tr|Q2PZK2|Q2PZK2_CUCMA2.8e-0847.37Aspartic acid proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 PE=4 S... [more]
tr|O81131|O81131_CUCMA2.8e-0847.37Aspartic proteinase inhibitor (Fragment) OS=Cucurbita maxima OX=3661 GN=API-1 PE... [more]
tr|Q6DLC8|Q6DLC8_CUCMA4.8e-0846.05Aspartic protease inhibitor OS=Cucurbita maxima OX=3661 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G041310.1CsaV3_6G041310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 13..102
e-value: 1.1E-23
score: 85.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G041310Cucsa.084000Cucumber (Gy14) v1cgycucB085
CsaV3_6G041310CsGy6G025670Cucumber (Gy14) v2cgybcucB298
CsaV3_6G041310MELO3C024606Melon (DHL92) v3.5.1cucmeB521
CsaV3_6G041310MELO3C024606.2Melon (DHL92) v3.6.1cucmedB509
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_6G041310CsaV3_7G013900Cucumber (Chinese Long) v3cuccucB219
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G041310Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G041310Wild cucumber (PI 183967)cpicucB371
CsaV3_6G041310Wild cucumber (PI 183967)cpicucB363
CsaV3_6G041310Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G041310Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G041310Watermelon (97103) v1cucwmB527
CsaV3_6G041310Watermelon (97103) v2cucwmbB430
CsaV3_6G041310Wax gourdcucwgoB643
CsaV3_6G041310Wax gourdcucwgoB651