CsaV3_6G040020.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G040020.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 23017923 .. 23018093 (+)
Sequence length171
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

mRNA sequence

ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

Coding sequence (CDS)

ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

Protein sequence

MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR
Homology
[Close]
BLAST of CsaV3_6G040020.1 vs. NCBI nr
Match: KGN48199.1 (hypothetical protein Csa_6G447080 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 57
          MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 56

[Close]
BLAST of CsaV3_6G040020.1 vs. TrEMBL
Match: tr|A0A0A0KHA6|A0A0A0KHA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G447080 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 57
          MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 56

The following BLAST results are available for this feature:
BLAST of CsaV3_6G040020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48199.14.0e-08100.00hypothetical protein Csa_6G447080 [Cucumis sativus][more]
BLAST of CsaV3_6G040020.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G040020.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G040020.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHA6|A0A0A0KHA6_CUCSA2.6e-08100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G447080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G040020CsaV3_6G040020gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G040020.1.exon1CsaV3_6G040020.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G040020.1.cds1CsaV3_6G040020.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G040020.1CsaV3_6G040020.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56