CsaV3_6G040020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G040020
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 23017923 .. 23018093 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

mRNA sequence

ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

Coding sequence (CDS)

ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

Protein sequence

MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR
Homology
[Close]
BLAST of CsaV3_6G040020 vs. NCBI nr
Match: KGN48199.1 (hypothetical protein Csa_6G447080 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 57
          MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 56

[Close]
BLAST of CsaV3_6G040020 vs. TrEMBL
Match: tr|A0A0A0KHA6|A0A0A0KHA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G447080 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 57
          MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQXXXXXXAPXXXXXXXXXXXXXXSNGGSGR 56

The following BLAST results are available for this feature:
BLAST of CsaV3_6G040020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48199.14.0e-08100.00hypothetical protein Csa_6G447080 [Cucumis sativus][more]
BLAST of CsaV3_6G040020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G040020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G040020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHA6|A0A0A0KHA6_CUCSA2.6e-08100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G447080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G040020.1CsaV3_6G040020.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G040020Cp4.1LG19g03830Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G040020ClCG04G009440Watermelon (Charleston Gray)cucwcgB485
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G040020Cucumber (Chinese Long) v3cuccucB136
CsaV3_6G040020Cucumber (Chinese Long) v3cuccucB210
CsaV3_6G040020Silver-seed gourdcarcucB0270
CsaV3_6G040020Silver-seed gourdcarcucB0280
CsaV3_6G040020Silver-seed gourdcarcucB0691
CsaV3_6G040020Cucumber (Gy14) v2cgybcucB141
CsaV3_6G040020Cucumber (Gy14) v2cgybcucB298
CsaV3_6G040020Cucumber (Gy14) v2cgybcucB299
CsaV3_6G040020Cucumber (Gy14) v1cgycucB171
CsaV3_6G040020Cucumber (Gy14) v1cgycucB476
CsaV3_6G040020Cucumber (Gy14) v1cgycucB587
CsaV3_6G040020Cucurbita maxima (Rimu)cmacucB0308
CsaV3_6G040020Cucurbita maxima (Rimu)cmacucB0672
CsaV3_6G040020Cucurbita maxima (Rimu)cmacucB0810
CsaV3_6G040020Cucurbita maxima (Rimu)cmacucB0994
CsaV3_6G040020Cucurbita maxima (Rimu)cmacucB1036
CsaV3_6G040020Cucurbita moschata (Rifu)cmocucB0302
CsaV3_6G040020Cucurbita moschata (Rifu)cmocucB0656
CsaV3_6G040020Cucurbita moschata (Rifu)cmocucB0794
CsaV3_6G040020Cucurbita moschata (Rifu)cmocucB0979
CsaV3_6G040020Cucurbita moschata (Rifu)cmocucB1020
CsaV3_6G040020Cucurbita pepo (Zucchini)cpecucB0093
CsaV3_6G040020Cucurbita pepo (Zucchini)cpecucB0365
CsaV3_6G040020Cucurbita pepo (Zucchini)cpecucB0778
CsaV3_6G040020Cucurbita pepo (Zucchini)cpecucB1076
CsaV3_6G040020Wild cucumber (PI 183967)cpicucB176
CsaV3_6G040020Wild cucumber (PI 183967)cpicucB363
CsaV3_6G040020Wild cucumber (PI 183967)cpicucB366
CsaV3_6G040020Bottle gourd (USVL1VR-Ls)cuclsiB444
CsaV3_6G040020Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G040020Bottle gourd (USVL1VR-Ls)cuclsiB474
CsaV3_6G040020Melon (DHL92) v3.5.1cucmeB497
CsaV3_6G040020Melon (DHL92) v3.5.1cucmeB521
CsaV3_6G040020Melon (DHL92) v3.6.1cucmedB427
CsaV3_6G040020Melon (DHL92) v3.6.1cucmedB483
CsaV3_6G040020Melon (DHL92) v3.6.1cucmedB509
CsaV3_6G040020Watermelon (Charleston Gray)cucwcgB446
CsaV3_6G040020Watermelon (Charleston Gray)cucwcgB462
CsaV3_6G040020Watermelon (97103) v1cucwmB477
CsaV3_6G040020Watermelon (97103) v1cucwmB530
CsaV3_6G040020Watermelon (97103) v1cucwmB540
CsaV3_6G040020Watermelon (97103) v2cucwmbB436
CsaV3_6G040020Watermelon (97103) v2cucwmbB451
CsaV3_6G040020Watermelon (97103) v2cucwmbB472
CsaV3_6G040020Wax gourdcucwgoB543
CsaV3_6G040020Wax gourdcucwgoB634
CsaV3_6G040020Wax gourdcucwgoB649