CsaV3_6G035570.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G035570.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 19546571 .. 19546882 (+)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

mRNA sequence

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

Coding sequence (CDS)

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

Protein sequence

MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSLGAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Homology
[Close]
BLAST of CsaV3_6G035570.1 vs. NCBI nr
Match: KGN47736.1 (hypothetical protein Csa_6G397160 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 8.8e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60
           MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL
Sbjct: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60

Query: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 104
           GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Sbjct: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 103

[Close]
BLAST of CsaV3_6G035570.1 vs. TrEMBL
Match: tr|A0A0A0KIY0|A0A0A0KIY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397160 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.8e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60
           MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL
Sbjct: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60

Query: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 104
           GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Sbjct: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 103

The following BLAST results are available for this feature:
BLAST of CsaV3_6G035570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47736.18.8e-54100.00hypothetical protein Csa_6G397160 [Cucumis sativus][more]
BLAST of CsaV3_6G035570.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G035570.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G035570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIY0|A0A0A0KIY0_CUCSA5.8e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G035570CsaV3_6G035570gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G035570.1.exon1CsaV3_6G035570.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G035570.1.cds1CsaV3_6G035570.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G035570.1CsaV3_6G035570.1-proteinpolypeptide