CsaV3_6G035570 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G035570
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 19546571 .. 19546882 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

mRNA sequence

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

Coding sequence (CDS)

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

Protein sequence

MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSLGAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC

Homology

[Close]

BLAST of CsaV3_6G035570 vs. NCBI nr
Match: KGN47736.1 (hypothetical protein Csa_6G397160 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 8.8e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60
           MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL
Sbjct: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60

Query: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 104
           GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Sbjct: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 103

[Close]

BLAST of CsaV3_6G035570 vs. TrEMBL
Match: tr|A0A0A0KIY0|A0A0A0KIY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397160 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.8e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60
           MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL
Sbjct: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60

Query: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 104
           GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Sbjct: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 103

The following BLAST results are available for this feature:

BLAST of CsaV3_6G035570 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47736.1	8.8e-54	100.00	hypothetical protein Csa_6G397160 [Cucumis sativus]	[more]

BLAST of CsaV3_6G035570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G035570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G035570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIY0\|A0A0A0KIY0_CUCSA	5.8e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G035570.1	CsaV3_6G035570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G035570	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G035570	Cucumber (Gy14) v1	cgycucB276
CsaV3_6G035570	Cucurbita maxima (Rimu)	cmacucB0046
CsaV3_6G035570	Cucurbita moschata (Rifu)	cmocucB0033
CsaV3_6G035570	Cucurbita pepo (Zucchini)	cpecucB0986
CsaV3_6G035570	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G035570	Bottle gourd (USVL1VR-Ls)	cuclsiB517
CsaV3_6G035570	Melon (DHL92) v3.5.1	cucmeB477
CsaV3_6G035570	Melon (DHL92) v3.5.1	cucmeB492
CsaV3_6G035570	Melon (DHL92) v3.6.1	cucmedB478
CsaV3_6G035570	Melon (DHL92) v3.6.1	cucmedB467
CsaV3_6G035570	Wax gourd	cucwgoB603