CsaV3_6G013580.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCTAACTTTATAATTTTGCACAAAAACGTACATTTATGAGTATTAGTTTTGGTAAATATAGGCTATGATTAGGAGTTAGTAAACAACCTTGGACCCAAAAGAAAGACTATAATATAAAATAAAATAAAAAAGGTAGAAGGGGTAATTTGGTAAAACAGAGAGGCATTTATCTTAAATATTAATAACAAAAGGGAAGGAGAGTAGTGGTAAAGGCAATTAGCCCAAATTTCTCTAACACTTCCAAACAATTCGCCCTTCCTTATCTTTGTTACGAAGAACGTCCGAAGAAACAACTAAACGATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGTCTCTTTTTTCAGATTCCCTCCCATTTCTTACCTTCTCAATCAATTCACTACCTTTCTTTCCCCTTCTTCATGTTTATACCTTTTGATTTATGTTTACTTTCATTTCTTTGAGATCCCTTCGCCCTTCACATGTTATTGCCTTTTTCCGCTTCGATTTCTGCTGTTTTTGTTCGTCCCTGAGGTTTTTGTTTTTTTTTTTGGATCAAATTCTGACTAGCATGCGTTTGCTTTGATTCCGTATCATTGCATGATCCAATGGATGAAGGATTAGGAAATTAGCGTTACTGATTCATTTTCGTTTTGCATATGTGTTAAATTGAATTGTTGGAATGGGTTTTTCTTTTTTAAATTATTTTTAATATGTTTGCGGTCTCTAAGTTTATGCTTGTTCTTTTCGTCTGGTTGTTTGTTAGTTCATCATATTTTCCATGGCTTGATTCTTTTTTATCAGGTGTATGTTTATATTCTTGTCACATCACTTTACGAACAAAATTATTTTTGATGCATGAATTGGTTTCGGAATTTAATTCCAGCGTGCCGTCTTTATAATCGTATTTTGAGTTTTGGAATGTATATTTCTTCTAGCTTTAAACAGGGGGGATTAGACAATTTGGTTTTAATGGTCTGTTTTAATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGTTTGCATTTGCCTCCTTTAATTACTTAAACTACAATAACTATATTTTCAATGGCCTTTTGTATATGTGGATAGCTTGTTTAATCTCCCCTCAAATGTGTCACTGTGCTTTCTCTGTTTAAGAATGGAATTTGGTGTGGAAATTTTTTACTTAGCACAGGATTCATTAGTACATTTTGGTAAGTAAACAATGAAGTTGGGTCAATTTTAGATTCCAACATTTTGGTAAGGTATGAAGTACATTTATAATAAAATATGAAGGAAGATCTAAGATTTACAATACTTAGCTAGGTAATGTCTTATAGTGAAGGTTTATAAAAGAAACCTAAATGCAATGAGTATATTTTCTAGTTGTTTCAAAATAACTAAGAATAGGAATTTGAAACAGAATTTCATGTAAAATAGTATTGTTAGTTTCACATACTTGGAAAATTAACTCCATGTTTCAAGTTCAAGTATCTGAATTTAAAATGTAAATAAATGTTTTCCCATGGTCTAATACAGTAATGCTTGAGTACCTGACAATTGATAGTTTGATAGACTTAGACAGCCACGTTACTTAAGTTGAAGTGTCCATGATTTGTAACTGTAAGTTTTCTCTAGTTGGCTTTCCATGGTCTTTCCTTTAACATCCATTATGTTATTATTTTCTGGAGTGGTGTTAAATATATCTTACTCTCCTTATGGCAATTAGTGAGTCAACAATTCTGAATTTCATCAAAATTCTTTTTTCTAGTCCCTGTGGTCAGCCATCTATGAACTCATATCGGATCAACGGGATCTGTCATTTCTTTTAGTTTTATGAGACTTAAAATTTGATATTGCCGTGTGCTTATTATAACAAGTTCTATCATACTCTGCTTTTTGCAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAAAAGCATTTATCTATCACCTCCTGAAATTCAGAAATTTTTAGTTTTTTGTTTTGTTGGTGCTTGATGAATGCATGAGCGGCATCTTTGCTTGTGTGTGGATAAATGGAAAATATTTGAGCCCAAACTTTAACTCTCTTATCAAATTACTCTTGTAATAGAGAGATTTCATGTCCTGTGTATCTCCATCTCTCAAGTTCAAGATTAAACCATTTGGTGTGCGTGGAAGGAGGAGTTTGTAAAATTTAGTCCCAAAGTCATCAATTTTTATTGGGGGGAATGGAAGCTTAATTATCTCTATGTTGTTTTACTTTATTTTCATAGATCCTCTCCTGTTTATGAACAGGGCTTTGTATCTCATTGGCACAAAGTGTTTGGATGTCCTTCACCAGGTGCGTTTCATACTTTTTCTTTCCTCTTATTATAATAGTGTGCCGCATGTGGATTGTTTGCTATTGCTTTTGTTTTCCCCTTTCAATTTTTGAGGAATGTAGGGCTTTGATAATTGTTTGTTTTTTTTTTAATTCTCAGTTTTCAGCAAAGTTTCAATAATTGTGTAGAAATTTTAAATCGACTATAAGAAGCGTCATTTCGGTTCTGGTTTACTCAAACAAAATCCAAAAAATTAGGTTTCCTATTTTATTTCAGTCCCACAATACAATACACACATTCCCTCGGCATCTTTGTGTGTTCTCTCTCACATAGTCGCATCCACCTTTGTCTCTAACACCAAGAAGCATAAAGATCACTCCCATTCAGAAGATGGTGTATTTTTTTTTCTTTCAAATTTTAAAAATATTTGTGTCACCCGCTGAAGAAGAGTGTGGCTATTCTCTCTATTCTTGTTATTTTTTAAAAAAATTATTATCAATAGAACACAAATTCAAGATTGGCCCGAATTGAATTGACCCAATTCTCATCGGGCCGGGTTTTGTTTGTATACCCAAGTGACCTCAAGCTGGGTTTACAGAAGACCTGATCCAACCTAACTCATGTATGCTTCTAATAGATTCTATTTGTTAGATACTCTTATTGATCATGAAATTTATAGTTTCTATCTGTGGTATTATCTATTACGGATAAACTTTGTATACATTTTAAAAAATTTAATTAAAAAATCAGTCATTTTGAAAATGATTCAGTGTTCGACAAATGATTTATTCAATTTCAAAATATTTAAATAAAATTGAATTGGAC ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
BLAST of CsaV3_6G013580.1 vs. NCBI nr
Match: XP_004139900.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis sativus]) HSP 1 Score: 300.8 bits (769), Expect = 2.6e-78 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. NCBI nr
Match: XP_022149770.1 (ubiquitin-NEDD8-like protein RUB1 [Momordica charantia]) HSP 1 Score: 299.7 bits (766), Expect = 5.9e-78 Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. NCBI nr
Match: XP_008456305.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis melo]) HSP 1 Score: 298.9 bits (764), Expect = 1.0e-77 Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. NCBI nr
Match: XP_002460225.1 (ubiquitin-NEDD8-like protein RUB1 [Sorghum bicolor] >XP_003578133.1 ubiquitin-NEDD8-like protein RUB1 [Brachypodium distachyon] >XP_004956842.1 ubiquitin-NEDD8-like protein RUB1 [Setaria italica] >XP_015611997.1 ubiquitin-NEDD8-like protein RUB1 [Oryza sativa Japonica Group] >XP_020177438.1 ubiquitin-NEDD8-like protein RUB1 [Aegilops tauschii subsp. tauschii] >XP_025799992.1 ubiquitin-NEDD8-like protein RUB1 [Panicum hallii] >P0C030.2 RecName: Full=Ubiquitin-NEDD8-like protein RUB1; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=NEDD8-like protein RUB1; AltName: Full=OsRUB1; AltName: Full=Ubiquitin-related protein 1; Flags: Precursor >BAD33498.1 polyubiquitin 2 [Oryza sativa Japonica Group] >BAD33626.1 polyubiquitin 2 [Oryza sativa Japonica Group] >BAF25113.1 Os09g0420800 [Oryza sativa Japonica Group] >EAZ09127.1 hypothetical protein OsI_31396 [Oryza sativa Indica Group] >BAG94169.1 unnamed protein product [Oryza sativa Japonica Group] >EER96746.1 hypothetical protein SORBI_3002G204200 [Sorghum bicolor] >BAJ87827.1 predicted protein [Hordeum vulgare subsp. vulgare] >BAT08123.1 Os09g0420800 [Oryza sativa Japonica Group] >KQJ90267.1 hypothetical protein BRADI_4g30470v3 [Brachypodium distachyon] >PAN12474.1 hypothetical protein PAHAL_2G267700 [Panicum hallii] >PUZ70738.1 hypothetical protein GQ55_2G258400 [Panicum hallii var. hallii] >RCV11698.1 hypothetical protein SETIT_2G207500v2 [Setaria italica]) HSP 1 Score: 297.4 bits (760), Expect = 2.9e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. NCBI nr
Match: EMS64626.1 (Ubiquitin-NEDD8-like protein RUB1 [Triticum urartu]) HSP 1 Score: 297.0 bits (759), Expect = 3.8e-77 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TAIR10
Match: AT1G31340.1 (related to ubiquitin 1) HSP 1 Score: 295.8 bits (756), Expect = 1.5e-80 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TAIR10
Match: AT2G35635.1 (ubiquitin 7) HSP 1 Score: 292.4 bits (747), Expect = 1.7e-79 Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TAIR10
Match: AT4G05320.2 (polyubiquitin 10) HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65 Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TAIR10
Match: AT4G05050.1 (ubiquitin 11) HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65 Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TAIR10
Match: AT4G02890.3 (Ubiquitin family protein) HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65 Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. Swiss-Prot
Match: sp|P0C030|RUB1_ORYSJ (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2) HSP 1 Score: 297.4 bits (760), Expect = 9.5e-80 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. Swiss-Prot
Match: sp|P0C073|RUB1_DESAN (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2) HSP 1 Score: 297.0 bits (759), Expect = 1.2e-79 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. Swiss-Prot
Match: sp|Q9SHE7|RUB1_ARATH (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3) HSP 1 Score: 295.8 bits (756), Expect = 2.8e-79 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. Swiss-Prot
Match: sp|P0C031|RUB2_ORYSJ (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB2 PE=2 SV=2) HSP 1 Score: 294.7 bits (753), Expect = 6.2e-79 Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. Swiss-Prot
Match: sp|Q8RUC6|RUB2_ARATH (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=2 SV=3) HSP 1 Score: 292.4 bits (747), Expect = 3.1e-78 Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TrEMBL
Match: tr|A0A1S3C469|A0A1S3C469_CUCME (ubiquitin-NEDD8-like protein RUB1 OS=Cucumis melo OX=3656 GN=LOC103496293 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 6.6e-78 Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TrEMBL
Match: tr|K3ZXQ0|K3ZXQ0_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101756295 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TrEMBL
Match: tr|W5FEU1|W5FEU1_WHEAT (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TrEMBL
Match: tr|I1IQ69|I1IQ69_BRADI (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=LOC100842080 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of CsaV3_6G013580.1 vs. TrEMBL
Match: tr|A0A2N9ED56|A0A2N9ED56_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS442 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77 Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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